RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 PXYLP1Q8TE99 480 aa9.64□□□□□ -0.87
CBX3-208ENST00000497498 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.63□□□□□ -0.87
CBX3-208ENST00000497498 GNPATO15228 680 aa9.63□□□□□ -0.87
CBX3-208ENST00000497498 FECHP22830 423 aa9.62□□□□□ -0.87
CBX3-208ENST00000497498 METTL3Q86U44 580 aaKnown RBP9.61□□□□□ -0.87
CBX3-208ENST00000497498 ZNF516Q92618 1163 aa9.61□□□□□ -0.87
CBX3-208ENST00000497498 PRR14Q9BWN1 585 aa9.61□□□□□ -0.87
CBX3-208ENST00000497498 COPS2P61201 443 aa9.57□□□□□ -0.88
CBX3-208ENST00000497498 GPIHBP1Q8IV16 184 aa9.57□□□□□ -0.88
CBX3-208ENST00000497498 SLC10A3P09131 477 aa9.56□□□□□ -0.88
CBX3-208ENST00000497498 PCDHB3Q9Y5E6 796 aa9.56□□□□□ -0.88
CBX3-208ENST00000497498 ACTN4O43707 911 aaKnown RBP9.55□□□□□ -0.88
CBX3-208ENST00000497498 ZPR1O75312 459 aa9.55□□□□□ -0.88
CBX3-208ENST00000497498 PPP1R18Q6NYC8 613 aa9.55□□□□□ -0.88
CBX3-208ENST00000497498 NKX2-3Q8TAU0 364 aa9.55□□□□□ -0.88
CBX3-208ENST00000497498 CFHP08603 1231 aa9.54□□□□□ -0.88
CBX3-208ENST00000497498 KMT5BQ4FZB7 885 aa9.54□□□□□ -0.88
CBX3-208ENST00000497498 BLOC1S3Q6QNY0 202 aa9.53□□□□□ -0.88
CBX3-208ENST00000497498 IRX2Q9BZI1 471 aaPredicted RBP9.53□□□□□ -0.88
CBX3-208ENST00000497498 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.52□□□□□ -0.89
CBX3-208ENST00000497498 DAXXQ9UER7 740 aaPredicted RBP9.52□□□□□ -0.89
CBX3-208ENST00000497498 TULP1O00294 542 aaPredicted RBP9.51□□□□□ -0.89
CBX3-208ENST00000497498 PHOX2BQ99453 314 aa9.51□□□□□ -0.89
CBX3-208ENST00000497498 RSPH4AQ5TD94 716 aa9.5□□□□□ -0.89
CBX3-208ENST00000497498 TMUB1Q9BVT8 246 aa9.48□□□□□ -0.89
CBX3-208ENST00000497498 GGCXP38435 758 aa9.47□□□□□ -0.89
CBX3-208ENST00000497498 NLRP7Q8WX94 980 aa9.47□□□□□ -0.89
CBX3-208ENST00000497498 MAP2K5Q13163 448 aa9.46□□□□□ -0.9
CBX3-208ENST00000497498 PRKD2Q9BZL6 878 aa9.46□□□□□ -0.9
CBX3-208ENST00000497498 V9GY48 417 aaPredicted RBP9.46□□□□□ -0.9
CBX3-208ENST00000497498 NR1I2O75469 434 aa9.45□□□□□ -0.9
CBX3-208ENST00000497498 DDX11L8A8MPP1 907 aa9.44□□□□□ -0.9
CBX3-208ENST00000497498 IRF6O14896 467 aa9.44□□□□□ -0.9
CBX3-208ENST00000497498 TLL1O43897 1013 aa9.44□□□□□ -0.9
CBX3-208ENST00000497498 SULF1Q8IWU6 871 aa9.44□□□□□ -0.9
CBX3-208ENST00000497498 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.43□□□□□ -0.9
CBX3-208ENST00000497498 SCUBE3Q8IX30 993 aa9.43□□□□□ -0.9
CBX3-208ENST00000497498 RDH13Q8NBN7 331 aa9.43□□□□□ -0.9
CBX3-208ENST00000497498 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
CBX3-208ENST00000497498 RNF223E7ERA6 249 aa9.42□□□□□ -0.9
CBX3-208ENST00000497498 GCGRP47871 477 aa9.42□□□□□ -0.9
CBX3-208ENST00000497498 ADH1BP00325 375 aa9.41□□□□□ -0.9
CBX3-208ENST00000497498 PUS10Q3MIT2 529 aaKnown RBP9.41□□□□□ -0.9
CBX3-208ENST00000497498 FUT2Q10981 343 aa9.39□□□□□ -0.91
CBX3-208ENST00000497498 LAPTM4AQ15012 233 aa9.39□□□□□ -0.91
CBX3-208ENST00000497498 MORN1Q5T089 497 aa9.39□□□□□ -0.91
CBX3-208ENST00000497498 S1PR4O95977 384 aa9.38□□□□□ -0.91
CBX3-208ENST00000497498 ATP6V1AP38606 617 aa9.38□□□□□ -0.91
CBX3-208ENST00000497498 ANKLE1Q8NAG6 615 aa9.38□□□□□ -0.91
CBX3-208ENST00000497498 GFRA3O60609 400 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 CD46P15529 392 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 LMOD2Q6P5Q4 547 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 CCDC102AQ96A19 550 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 EMID1Q96A84 441 aaPredicted RBP9.36□□□□□ -0.91
CBX3-208ENST00000497498 THAP11Q96EK4 314 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 SPSB2Q99619 263 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 SLC6A16Q9GZN6 736 aa9.36□□□□□ -0.91
CBX3-208ENST00000497498 PPEF1O14829 653 aaPredicted RBP9.34□□□□□ -0.91
CBX3-208ENST00000497498 SLC19A1P41440 591 aa9.34□□□□□ -0.91
CBX3-208ENST00000497498 MDM2Q00987 491 aaPredicted RBP9.34□□□□□ -0.91
CBX3-208ENST00000497498 SLC27A5Q9Y2P5 690 aa9.34□□□□□ -0.91
CBX3-208ENST00000497498 SALL2Q9Y467 1007 aaPredicted RBP9.34□□□□□ -0.91
CBX3-208ENST00000497498 Q6ZNB5 142 aa9.33□□□□□ -0.92
CBX3-208ENST00000497498 NRG2O14511 850 aaPredicted RBP9.32□□□□□ -0.92
CBX3-208ENST00000497498 GRIPAP1Q4V328 841 aa9.31□□□□□ -0.92
CBX3-208ENST00000497498 ZMYND10O75800 440 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 FMNL1O95466 1100 aaPredicted RBP9.3□□□□□ -0.92
CBX3-208ENST00000497498 CLCN1P35523 988 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 SPRYD7Q5W111 196 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 BRICD5Q6PL45 260 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 LIAT1Q6ZQX7 453 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 BARGINQ6ZT62 677 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 FAM160A2Q8N612 972 aaPredicted RBP9.3□□□□□ -0.92
CBX3-208ENST00000497498 GPCPD1Q9NPB8 672 aa9.3□□□□□ -0.92
CBX3-208ENST00000497498 KDM4AO75164 1064 aa9.29□□□□□ -0.92
CBX3-208ENST00000497498 PLA2G2CQ5R387 149 aa9.29□□□□□ -0.92
CBX3-208ENST00000497498 PDZRN3Q9UPQ7 1066 aa9.29□□□□□ -0.92
CBX3-208ENST00000497498 TRIM67Q6ZTA4 783 aa9.28□□□□□ -0.92
CBX3-208ENST00000497498 ZNF598Q86UK7 904 aaKnown RBP9.28□□□□□ -0.92
CBX3-208ENST00000497498 ZC3H15Q8WU90 426 aaKnown RBP9.28□□□□□ -0.92
CBX3-208ENST00000497498 FAM217BQ9NTX9 383 aaPredicted RBP9.28□□□□□ -0.92
CBX3-208ENST00000497498 LCE2BO14633 110 aa9.27□□□□□ -0.93
CBX3-208ENST00000497498 USP46P62068 366 aa9.27□□□□□ -0.93
CBX3-208ENST00000497498 Q3C1V9 767 aa9.26□□□□□ -0.93
CBX3-208ENST00000497498 RNF19BQ6ZMZ0 732 aa9.26□□□□□ -0.93
CBX3-208ENST00000497498 MSS51Q4VC12 460 aa9.25□□□□□ -0.93
CBX3-208ENST00000497498 KRI1Q8N9T8 703 aaKnown RBP9.25□□□□□ -0.93
CBX3-208ENST00000497498 REPIN1Q9BWE0 567 aaKnown RBP9.25□□□□□ -0.93
CBX3-208ENST00000497498 TRAF7Q6Q0C0 670 aa9.24□□□□□ -0.93
CBX3-208ENST00000497498 PRR20EP86478 221 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 PRR20CP86479 221 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 PRR20DP86480 221 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 PRR20BP86481 221 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 PRR20AP86496 221 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 ZNF697Q5TEC3 545 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 PRDM9Q9NQV7 894 aa9.23□□□□□ -0.93
CBX3-208ENST00000497498 FCF1Q9Y324 198 aaKnown RBP9.23□□□□□ -0.93
CBX3-208ENST00000497498 HOXA2O43364 376 aa9.22□□□□□ -0.93
CBX3-208ENST00000497498 RPIAP49247 311 aa9.22□□□□□ -0.93
CBX3-208ENST00000497498 AMHR2Q16671 573 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms