RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 PLPP6Q8IY26 295 aa2.93□□□□□ -1.94
UBR4-217ENST00000497018 MRRFQ96E11 262 aaKnown RBP2.93□□□□□ -1.94
UBR4-217ENST00000497018 GJD4Q96KN9 370 aaPredicted RBP2.93□□□□□ -1.94
UBR4-217ENST00000497018 TBC1D2Q9BYX2 928 aa2.93□□□□□ -1.94
UBR4-217ENST00000497018 PPP1R12CQ9BZL4 782 aa2.93□□□□□ -1.94
UBR4-217ENST00000497018 PALM3A6NDB9 673 aaPredicted RBP2.92□□□□□ -1.94
UBR4-217ENST00000497018 CD44P16070 742 aaKnown RBP2.92□□□□□ -1.94
UBR4-217ENST00000497018 RFX1P22670 979 aa2.92□□□□□ -1.94
UBR4-217ENST00000497018 FXR2P51116 673 aaKnown RBP eCLIP2.92□□□□□ -1.941e-15■■■■□ 23.3
UBR4-217ENST00000497018 METTL3Q86U44 580 aaKnown RBP2.92□□□□□ -1.94
UBR4-217ENST00000497018 WWC1Q8IX03 1113 aa2.92□□□□□ -1.94
UBR4-217ENST00000497018 MICALL2Q8IY33 904 aa2.92□□□□□ -1.94
UBR4-217ENST00000497018 DDX12PQ92771 950 aa2.92□□□□□ -1.94
UBR4-217ENST00000497018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.92□□□□□ -1.944e-14■■■□□ 16.1
UBR4-217ENST00000497018 SYNJ2O15056 1496 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 C2orf72A6NCS6 295 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 SPTLC1O15269 473 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 USP17L8P0C7I0 530 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 TCF3P15923 654 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 ERCC3P19447 782 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 VAMP1P23763 118 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 CANXP27824 592 aaKnown RBP2.91□□□□□ -1.94
UBR4-217ENST00000497018 MAP3K9P80192 1104 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 HDGFL1Q5TGJ6 251 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 PHLDB3Q6NSJ2 640 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 NLRP7Q8WX94 980 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 SREK1Q8WXA9 508 aaKnown RBP2.91□□□□□ -1.94
UBR4-217ENST00000497018 SPATA32Q96LK8 384 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 ALG2Q9H553 416 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 TRPC6Q9Y210 931 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 SMARCA2P51531 1590 aa2.91□□□□□ -1.94
UBR4-217ENST00000497018 C7P10643 843 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 CLCN6P51797 869 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 EN1Q05925 392 aaPredicted RBP2.9□□□□□ -1.95
UBR4-217ENST00000497018 QPCTQ16769 361 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 RSBN1LQ6PCB5 846 aaPredicted RBP2.9□□□□□ -1.95
UBR4-217ENST00000497018 CHRDL2Q6WN34 429 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 NPAS4Q8IUM7 802 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 PXYLP1Q8TE99 480 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 TRIM34Q9BYJ4 488 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 ZMIZ1Q9ULJ6 1067 aa2.9□□□□□ -1.95
UBR4-217ENST00000497018 MAFBQ9Y5Q3 323 aaPredicted RBP2.9□□□□□ -1.95
UBR4-217ENST00000497018 CADPSQ9ULU8 1353 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 KDM4FA0A1W2PPD8 638 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 LILRB3O75022 631 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 RECKO95980 971 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 TIE1P35590 1138 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 ELOAQ14241 798 aaKnown RBP2.89□□□□□ -1.95
UBR4-217ENST00000497018 DIXDC1Q155Q3 683 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 WASHC4Q2M389 1173 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 B4GALNT3Q6L9W6 998 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 DPY19L2Q6NUT2 758 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 RIC3Q7Z5B4 369 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 DHX37Q8IY37 1157 aaKnown RBP2.89□□□□□ -1.95
UBR4-217ENST00000497018 ZNF710Q8N1W2 664 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 TTC13Q8NBP0 860 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 SPIRE2Q8WWL2 714 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 UPF1Q92900 1129 aaKnown RBP eCLIP2.89□□□□□ -1.95
UBR4-217ENST00000497018 SIRT1Q96EB6 747 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 DRC1Q96MC2 740 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 TMEM121BQ9BXQ6 578 aaPredicted RBP2.89□□□□□ -1.95
UBR4-217ENST00000497018 SLAIN2Q9P270 581 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 ADGRG1Q9Y653 693 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 NDUFB9Q9Y6M9 179 aa2.89□□□□□ -1.95
UBR4-217ENST00000497018 SMARCA5O60264 1052 aaPredicted RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 LMOD1P29536 600 aaPredicted RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 GJA5P36382 358 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 FAM161AQ3B820 660 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 RTL5Q5HYW3 569 aaPredicted RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 IFFO2Q5TF58 517 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 TMEM164Q5U3C3 297 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 PIP4P2Q8N4L2 257 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 STK32AQ8WU08 396 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 PHF12Q96QT6 1004 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 HMX1Q9NP08 348 aaPredicted RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 MYT1LQ9UL68 1186 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 ATP1B4Q9UN42 357 aaPredicted RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 ARAP1Q96P48 1450 aa2.88□□□□□ -1.95
UBR4-217ENST00000497018 ZC3H4Q9UPT8 1303 aaKnown RBP2.88□□□□□ -1.95
UBR4-217ENST00000497018 MOXD2PA6NHM9 499 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 SOWAHDA6NJG2 315 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 TTLL13PA6NNM8 815 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 PPM1GO15355 546 aaPredicted RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 EVI5O60447 810 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 AP1G2O75843 785 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 OATP04181 439 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 CD46P15529 392 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 ZC3H6P61129 1189 aaKnown RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 VAC14Q08AM6 782 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 TSR1Q2NL82 804 aaKnown RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 KANK4Q5T7N3 995 aaPredicted RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 FBXO33Q7Z6M2 555 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 PDCD7Q8N8D1 485 aaKnown RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 PRR7Q8TB68 274 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 GIPC2Q8TF65 315 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 BCL2L13Q9BXK5 485 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 ANO8Q9HCE9 1232 aaPredicted RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 CWC22Q9HCG8 908 aaKnown RBP2.87□□□□□ -1.95
UBR4-217ENST00000497018 PRM3Q9NNZ6 103 aa2.87□□□□□ -1.95
UBR4-217ENST00000497018 TFIP11Q9UBB9 837 aaKnown RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms