RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 SLF2Q8IX21 1173 aa12.74□□□□□ -0.37
CCDC39-207ENST00000495817 HCSTQ9UBK5 93 aa12.74□□□□□ -0.37
CCDC39-207ENST00000495817 SWT1Q5T5J6 900 aaKnown RBP12.73□□□□□ -0.37
CCDC39-207ENST00000495817 BCAMP50895 628 aa12.72□□□□□ -0.37
CCDC39-207ENST00000495817 NYAP1Q6ZVC0 841 aa12.72□□□□□ -0.37
CCDC39-207ENST00000495817 AK7Q96M32 723 aa12.71□□□□□ -0.37
CCDC39-207ENST00000495817 TSR3Q9UJK0 312 aaKnown RBP12.71□□□□□ -0.37
CCDC39-207ENST00000495817 PHOX2BQ99453 314 aa12.7□□□□□ -0.38
CCDC39-207ENST00000495817 DAXXQ9UER7 740 aaPredicted RBP12.69□□□□□ -0.38
CCDC39-207ENST00000495817 AMHR2Q16671 573 aa12.68□□□□□ -0.38
CCDC39-207ENST00000495817 HPS5Q9UPZ3 1129 aa12.68□□□□□ -0.38
CCDC39-207ENST00000495817 RNF40O75150 1001 aa12.66□□□□□ -0.38
CCDC39-207ENST00000495817 CLCN1P35523 988 aa12.66□□□□□ -0.38
CCDC39-207ENST00000495817 PPP4CP60510 307 aa12.66□□□□□ -0.38
CCDC39-207ENST00000495817 SULF1Q8IWU6 871 aa12.66□□□□□ -0.38
CCDC39-207ENST00000495817 RSPH4AQ5TD94 716 aa12.65□□□□□ -0.38
CCDC39-207ENST00000495817 SLC24A3Q9HC58 644 aa12.65□□□□□ -0.38
CCDC39-207ENST00000495817 PTPN5P54829 565 aa12.64□□□□□ -0.39
CCDC39-207ENST00000495817 GPCPD1Q9NPB8 672 aa12.64□□□□□ -0.39
CCDC39-207ENST00000495817 TRIM66O15016 1216 aa12.63□□□□□ -0.39
CCDC39-207ENST00000495817 PRR14Q9BWN1 585 aa12.63□□□□□ -0.39
CCDC39-207ENST00000495817 WBP1LQ9NX94 342 aa12.63□□□□□ -0.39
CCDC39-207ENST00000495817 MDM2Q00987 491 aaPredicted RBP12.62□□□□□ -0.39
CCDC39-207ENST00000495817 NLRP7Q8WX94 980 aa12.61□□□□□ -0.39
CCDC39-207ENST00000495817 TMUB1Q9BVT8 246 aa12.6□□□□□ -0.39
CCDC39-207ENST00000495817 TTLL12Q14166 644 aaPredicted RBP12.59□□□□□ -0.39
CCDC39-207ENST00000495817 KMT5BQ4FZB7 885 aa12.57□□□□□ -0.4
CCDC39-207ENST00000495817 DDX11L8A8MPP1 907 aa12.56□□□□□ -0.4
CCDC39-207ENST00000495817 CFHP08603 1231 aa12.55□□□□□ -0.4
CCDC39-207ENST00000495817 SLC10A3P09131 477 aa12.55□□□□□ -0.4
CCDC39-207ENST00000495817 PARP9Q8IXQ6 854 aa12.55□□□□□ -0.4
CCDC39-207ENST00000495817 RDH13Q8NBN7 331 aa12.55□□□□□ -0.4
CCDC39-207ENST00000495817 FAM217BQ9NTX9 383 aaPredicted RBP12.55□□□□□ -0.4
CCDC39-207ENST00000495817 PDE4DQ08499 809 aa12.54□□□□□ -0.4
CCDC39-207ENST00000495817 CD46P15529 392 aa12.52□□□□□ -0.41
CCDC39-207ENST00000495817 APLP1P51693 650 aa12.52□□□□□ -0.41
CCDC39-207ENST00000495817 GIGYF2Q6Y7W6 1299 aaKnown RBP12.52□□□□□ -0.41
CCDC39-207ENST00000495817 ACTN4O43707 911 aaKnown RBP12.5□□□□□ -0.41
CCDC39-207ENST00000495817 REPIN1Q9BWE0 567 aaKnown RBP12.5□□□□□ -0.41
CCDC39-207ENST00000495817 GCGRP47871 477 aa12.48□□□□□ -0.41
CCDC39-207ENST00000495817 ITGBL1O95965 494 aaPredicted RBP12.47□□□□□ -0.41
CCDC39-207ENST00000495817 SSTR3P32745 418 aaPredicted RBP12.47□□□□□ -0.41
CCDC39-207ENST00000495817 PCDHB3Q9Y5E6 796 aa12.46□□□□□ -0.41
CCDC39-207ENST00000495817 USP46P62068 366 aa12.44□□□□□ -0.42
CCDC39-207ENST00000495817 GRIPAP1Q4V328 841 aa12.43□□□□□ -0.42
CCDC39-207ENST00000495817 IFFO2Q5TF58 517 aa12.43□□□□□ -0.42
CCDC39-207ENST00000495817 KDM4AO75164 1064 aa12.42□□□□□ -0.42
CCDC39-207ENST00000495817 MTRQ99707 1265 aa12.42□□□□□ -0.42
CCDC39-207ENST00000495817 IL21Q9HBE4 155 aa12.42□□□□□ -0.42
CCDC39-207ENST00000495817 MS4A1P11836 297 aa12.41□□□□□ -0.42
CCDC39-207ENST00000495817 TJAP1Q5JTD0 557 aa12.41□□□□□ -0.42
CCDC39-207ENST00000495817 ATP6V1AP38606 617 aa12.4□□□□□ -0.42
CCDC39-207ENST00000495817 FUT2Q10981 343 aa12.4□□□□□ -0.42
CCDC39-207ENST00000495817 DIXDC1Q155Q3 683 aa12.4□□□□□ -0.42
CCDC39-207ENST00000495817 PLA2G2EQ9NZK7 142 aa12.4□□□□□ -0.42
CCDC39-207ENST00000495817 NR1I2O75469 434 aa12.39□□□□□ -0.43
CCDC39-207ENST00000495817 KCNC4Q03721 635 aa12.39□□□□□ -0.43
CCDC39-207ENST00000495817 BEGAINQ9BUH8 593 aa12.39□□□□□ -0.43
CCDC39-207ENST00000495817 NUTM1Q86Y26 1132 aa12.38□□□□□ -0.43
CCDC39-207ENST00000495817 KDM4CQ9H3R0 1056 aa12.38□□□□□ -0.43
CCDC39-207ENST00000495817 BLOC1S3Q6QNY0 202 aa12.37□□□□□ -0.43
CCDC39-207ENST00000495817 COPS2P61201 443 aa12.36□□□□□ -0.43
CCDC39-207ENST00000495817 MORN1Q5T089 497 aa12.36□□□□□ -0.43
CCDC39-207ENST00000495817 GPBP1L1Q9HC44 474 aaPredicted RBP12.36□□□□□ -0.43
CCDC39-207ENST00000495817 HOXA2O43364 376 aa12.35□□□□□ -0.43
CCDC39-207ENST00000495817 ZPR1O75312 459 aa12.34□□□□□ -0.43
CCDC39-207ENST00000495817 NEUROD2Q15784 382 aa12.34□□□□□ -0.43
CCDC39-207ENST00000495817 DDRGK1Q96HY6 314 aa12.34□□□□□ -0.43
CCDC39-207ENST00000495817 SPIRE2Q8WWL2 714 aa12.33□□□□□ -0.44
CCDC39-207ENST00000495817 BRPF1P55201 1214 aaPredicted RBP12.32□□□□□ -0.44
CCDC39-207ENST00000495817 PUS10Q3MIT2 529 aaKnown RBP12.32□□□□□ -0.44
CCDC39-207ENST00000495817 SALL2Q9Y467 1007 aaPredicted RBP12.31□□□□□ -0.44
CCDC39-207ENST00000495817 GJA5P36382 358 aa12.3□□□□□ -0.44
CCDC39-207ENST00000495817 Q3C1V9 767 aa12.3□□□□□ -0.44
CCDC39-207ENST00000495817 SCUBE3Q8IX30 993 aa12.3□□□□□ -0.44
CCDC39-207ENST00000495817 TBC1D2Q9BYX2 928 aa12.29□□□□□ -0.44
CCDC39-207ENST00000495817 ZNF516Q92618 1163 aa12.28□□□□□ -0.44
CCDC39-207ENST00000495817 RSPH6AQ9H0K4 717 aa12.28□□□□□ -0.44
CCDC39-207ENST00000495817 SLC27A5Q9Y2P5 690 aa12.28□□□□□ -0.44
CCDC39-207ENST00000495817 TMEM132AQ24JP5 1023 aa12.27□□□□□ -0.45
CCDC39-207ENST00000495817 FMNL1O95466 1100 aaPredicted RBP12.26□□□□□ -0.45
CCDC39-207ENST00000495817 ADH1BP00325 375 aa12.26□□□□□ -0.45
CCDC39-207ENST00000495817 THAP11Q96EK4 314 aa12.25□□□□□ -0.45
CCDC39-207ENST00000495817 FAM117AQ9C073 453 aa12.25□□□□□ -0.45
CCDC39-207ENST00000495817 A0A0G2JS52 829 aa12.24□□□□□ -0.45
CCDC39-207ENST00000495817 FDX1P10109 184 aa12.24□□□□□ -0.45
CCDC39-207ENST00000495817 MOXD2PA6NHM9 499 aa12.23□□□□□ -0.45
CCDC39-207ENST00000495817 TLL1O43897 1013 aa12.23□□□□□ -0.45
CCDC39-207ENST00000495817 MYSM1Q5VVJ2 828 aa12.23□□□□□ -0.45
CCDC39-207ENST00000495817 RSBN1LQ6PCB5 846 aaPredicted RBP12.23□□□□□ -0.45
CCDC39-207ENST00000495817 SPTLC1O15269 473 aa12.22□□□□□ -0.45
CCDC39-207ENST00000495817 GGCXP38435 758 aa12.22□□□□□ -0.45
CCDC39-207ENST00000495817 BRICD5Q6PL45 260 aa12.22□□□□□ -0.45
CCDC39-207ENST00000495817 HLA-CQ95604 372 aa12.22□□□□□ -0.45
CCDC39-207ENST00000495817 SPSB2Q99619 263 aa12.22□□□□□ -0.45
CCDC39-207ENST00000495817 TUSC1Q2TAM9 212 aa12.21□□□□□ -0.45
CCDC39-207ENST00000495817 PLEKHG3A1L390 1219 aa12.2□□□□□ -0.46
CCDC39-207ENST00000495817 MSS51Q4VC12 460 aa12.2□□□□□ -0.46
CCDC39-207ENST00000495817 SH3D19Q5HYK7 790 aa12.2□□□□□ -0.46
CCDC39-207ENST00000495817 NKX2-3Q8TAU0 364 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms