RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 TEX14Q8IWB6 1497 aa13.21□□□□□ -0.3
RIF1-211ENST00000494333 GRXCR2A6NFK2 248 aa13.2□□□□□ -0.3
RIF1-211ENST00000494333 COL17A1Q9UMD9 1497 aaPredicted RBP13.2□□□□□ -0.3
RIF1-211ENST00000494333 MAP3K4Q9Y6R4 1608 aa13.2□□□□□ -0.3
RIF1-211ENST00000494333 PLEKHD1A6NEE1 506 aa13.19□□□□□ -0.3
RIF1-211ENST00000494333 PPRC1Q5VV67 1664 aaKnown RBP13.18□□□□□ -0.3
RIF1-211ENST00000494333 ATP1B4Q9UN42 357 aaPredicted RBP13.18□□□□□ -0.3
RIF1-211ENST00000494333 LHX6Q9UPM6 363 aa13.18□□□□□ -0.3
RIF1-211ENST00000494333 RAPGEF6Q8TEU7 1601 aa13.17□□□□□ -0.3
RIF1-211ENST00000494333 SMYD5Q6GMV2 418 aa13.17□□□□□ -0.3
RIF1-211ENST00000494333 NUP153P49790 1475 aaKnown RBP13.16□□□□□ -0.3
RIF1-211ENST00000494333 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.16□□□□□ -0.3
RIF1-211ENST00000494333 MAGI3Q5TCQ9 1506 aa13.16□□□□□ -0.3
RIF1-211ENST00000494333 EFCAB5A4FU69 1503 aa13.15□□□□□ -0.3
RIF1-211ENST00000494333 TULP1O00294 542 aaPredicted RBP13.15□□□□□ -0.3
RIF1-211ENST00000494333 LCE2DQ5TA82 110 aaPredicted RBP13.15□□□□□ -0.3
RIF1-211ENST00000494333 MARVELD3Q96A59 401 aa13.14□□□□□ -0.31
RIF1-211ENST00000494333 PCDHGA10Q9Y5H3 936 aa13.14□□□□□ -0.31
RIF1-211ENST00000494333 PHF14O94880 888 aa13.13□□□□□ -0.31
RIF1-211ENST00000494333 OSBPP22059 807 aa13.13□□□□□ -0.31
RIF1-211ENST00000494333 FOSBP53539 338 aa13.13□□□□□ -0.31
RIF1-211ENST00000494333 ZNF454Q8N9F8 522 aa13.12□□□□□ -0.31
RIF1-211ENST00000494333 CFAP43Q8NDM7 1665 aa13.12□□□□□ -0.31
RIF1-211ENST00000494333 ARHGAP35Q9NRY4 1499 aa13.11□□□□□ -0.31
RIF1-211ENST00000494333 EMP3P54852 163 aa13.11□□□□□ -0.31
RIF1-211ENST00000494333 LMOD2Q6P5Q4 547 aa13.11□□□□□ -0.31
RIF1-211ENST00000494333 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
RIF1-211ENST00000494333 PRIM1P49642 420 aaKnown RBP13.1□□□□□ -0.31
RIF1-211ENST00000494333 RBM26Q5T8P6 1007 aaKnown RBP13.1□□□□□ -0.31
RIF1-211ENST00000494333 EPAS1Q99814 870 aa13.1□□□□□ -0.31
RIF1-211ENST00000494333 TYW1BQ6NUM6 668 aa13.09□□□□□ -0.31
RIF1-211ENST00000494333 RAPGEF3O95398 923 aa13.08□□□□□ -0.32
RIF1-211ENST00000494333 ERBB3P21860 1342 aa13.08□□□□□ -0.32
RIF1-211ENST00000494333 PHLDB1Q86UU1 1377 aa13.07□□□□□ -0.32
RIF1-211ENST00000494333 PSDA5PKW4 1024 aaPredicted RBP13.07□□□□□ -0.32
RIF1-211ENST00000494333 CDK11AQ9UQ88 783 aaPredicted RBP13.07□□□□□ -0.32
RIF1-211ENST00000494333 ABCA9Q8IUA7 1624 aa13.06□□□□□ -0.32
RIF1-211ENST00000494333 PPP4R3BQ5MIZ7 849 aa13.06□□□□□ -0.32
RIF1-211ENST00000494333 FBXW7Q969H0 707 aa13.06□□□□□ -0.32
RIF1-211ENST00000494333 ZDHHC16Q969W1 377 aa13.06□□□□□ -0.32
RIF1-211ENST00000494333 CDK13Q14004 1512 aaKnown RBP13.05□□□□□ -0.32
RIF1-211ENST00000494333 ARAP3Q8WWN8 1544 aa13.05□□□□□ -0.32
RIF1-211ENST00000494333 EN1Q05925 392 aaPredicted RBP13.05□□□□□ -0.32
RIF1-211ENST00000494333 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
RIF1-211ENST00000494333 RBM33Q96EV2 1170 aaKnown RBP13.05□□□□□ -0.32
RIF1-211ENST00000494333 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
RIF1-211ENST00000494333 NEO1Q92859 1461 aa13.04□□□□□ -0.32
RIF1-211ENST00000494333 ADAM33Q9BZ11 813 aa13.03□□□□□ -0.32
RIF1-211ENST00000494333 MAP3K7O43318 606 aa13.02□□□□□ -0.33
RIF1-211ENST00000494333 ADGRL1O94910 1474 aa13.02□□□□□ -0.33
RIF1-211ENST00000494333 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.01□□□□□ -0.332e-6■■□□□ 11.5
RIF1-211ENST00000494333 HECW1Q76N89 1606 aa13□□□□□ -0.33
RIF1-211ENST00000494333 AKNAQ7Z591 1439 aa13□□□□□ -0.33
RIF1-211ENST00000494333 FANCAO15360 1455 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 CLIP1P30622 1438 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 POTEB3A0JP26 581 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 NUTM2FA1L443 756 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 TSR1Q2NL82 804 aaKnown RBP12.99□□□□□ -0.33
RIF1-211ENST00000494333 POTEBQ6S5H4 581 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 HS3ST6Q96QI5 342 aa12.99□□□□□ -0.33
RIF1-211ENST00000494333 C6orf132Q5T0Z8 1188 aa12.98□□□□□ -0.33
RIF1-211ENST00000494333 GPIHBP1Q8IV16 184 aa12.98□□□□□ -0.33
RIF1-211ENST00000494333 BCL2L12Q9HB09 334 aa12.98□□□□□ -0.33
RIF1-211ENST00000494333 PLCH2O75038 1416 aa12.97□□□□□ -0.33
RIF1-211ENST00000494333 CASKIN1Q8WXD9 1431 aa12.97□□□□□ -0.33
RIF1-211ENST00000494333 EFCAB2Q5VUJ9 269 aa12.97□□□□□ -0.33
RIF1-211ENST00000494333 CDHR5Q9HBB8 845 aa12.97□□□□□ -0.33
RIF1-211ENST00000494333 DENND4BO75064 1496 aaPredicted RBP12.97□□□□□ -0.33
RIF1-211ENST00000494333 TROQ12816 1431 aaPredicted RBP12.96□□□□□ -0.34
RIF1-211ENST00000494333 TTC37Q6PGP7 1564 aa12.95□□□□□ -0.34
RIF1-211ENST00000494333 ARID4BQ4LE39 1312 aaPredicted RBP12.95□□□□□ -0.34
RIF1-211ENST00000494333 TPRNQ4KMQ1 711 aa12.95□□□□□ -0.34
RIF1-211ENST00000494333 ZC3H15Q8WU90 426 aaKnown RBP12.94□□□□□ -0.34
RIF1-211ENST00000494333 SCAPERQ9BY12 1400 aa12.94□□□□□ -0.34
RIF1-211ENST00000494333 LOC105371045A0A1W2PR82 267 aa12.93□□□□□ -0.34
RIF1-211ENST00000494333 ZNF687Q8N1G0 1237 aa12.93□□□□□ -0.34
RIF1-211ENST00000494333 GPR37O15354 613 aa12.92□□□□□ -0.34
RIF1-211ENST00000494333 PTPREP23469 700 aa12.92□□□□□ -0.34
RIF1-211ENST00000494333 POTEEQ6S8J3 1075 aa12.92□□□□□ -0.34
RIF1-211ENST00000494333 NPDC1Q9NQX5 325 aaPredicted RBP12.92□□□□□ -0.34
RIF1-211ENST00000494333 CCDC18Q5T9S5 1454 aa12.91□□□□□ -0.34
RIF1-211ENST00000494333 PTGDRQ13258 359 aa12.91□□□□□ -0.34
RIF1-211ENST00000494333 PCF11O94913 1555 aaKnown RBP12.9□□□□□ -0.34
RIF1-211ENST00000494333 FCHSD2O94868 740 aa12.9□□□□□ -0.34
RIF1-211ENST00000494333 KCNK17Q96T54 332 aa12.9□□□□□ -0.34
RIF1-211ENST00000494333 FRMPD1Q5SYB0 1578 aa12.9□□□□□ -0.35
RIF1-211ENST00000494333 KIF14Q15058 1648 aa12.89□□□□□ -0.35
RIF1-211ENST00000494333 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
RIF1-211ENST00000494333 COL9A1P20849 921 aa12.89□□□□□ -0.35
RIF1-211ENST00000494333 AFAP1Q8N556 730 aa12.89□□□□□ -0.35
RIF1-211ENST00000494333 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
RIF1-211ENST00000494333 CFAP74Q9C0B2 1584 aa12.89□□□□□ -0.35
RIF1-211ENST00000494333 PSEN2P49810 448 aa12.88□□□□□ -0.35
RIF1-211ENST00000494333 MYT1LQ9UL68 1186 aa12.88□□□□□ -0.35
RIF1-211ENST00000494333 AXIN2Q9Y2T1 843 aa12.88□□□□□ -0.35
RIF1-211ENST00000494333 ARHGAP33O14559 1287 aa12.87□□□□□ -0.35
RIF1-211ENST00000494333 LRRIQ1Q96JM4 1722 aa12.87□□□□□ -0.35
RIF1-211ENST00000494333 ARHGAP5Q13017 1502 aa12.87□□□□□ -0.35
RIF1-211ENST00000494333 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
RIF1-211ENST00000494333 YEATS2Q9ULM3 1422 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms