RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PRAM1Q96QH2 718 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 ZBED9Q6R2W3 1325 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 NUTM2GQ5VZR2 741 aa13.85□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 LTV1Q96GA3 475 aaPredicted RBP13.85□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.85□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 SKAP1Q86WV1 359 aa13.85□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 ERBINQ96RT1 1412 aa13.84□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 TCOF1Q13428 1488 aaKnown RBP13.84□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 WAPLQ7Z5K2 1190 aa13.84□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 HSP90AA1P07900 732 aaKnown RBP13.84□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 PZPP20742 1482 aa13.84□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 EIF3AQ14152 1382 aaKnown RBP13.83□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 DISP3Q9P2K9 1392 aa13.83□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 HDGFL2Q7Z4V5 671 aaPredicted RBP13.83□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 CFAP65Q6ZU64 1925 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 LRRIQ1Q96JM4 1722 aa13.82□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 MTHFSP49914 203 aa13.82□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 GSE1Q14687 1217 aa13.82□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 GOLGA2Q08379 1002 aa13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 PLCH2O75038 1416 aa13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 PPP2R1AP30153 589 aa13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 FTSJ3Q8IY81 847 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 BRPF3Q9ULD4 1205 aa13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 HMOX1P09601 288 aa13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 ANP32BQ92688 251 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 HSP90AA2PQ14568 343 aaPredicted RBP13.81□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 PNNQ9H307 717 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 TRIM44Q96DX7 344 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 EVC2Q86UK5 1308 aa13.79□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 NGDNQ8NEJ9 315 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 PMFBP1Q8TBY8 1022 aa13.78□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 CRBNQ96SW2 442 aa13.78□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 CABP1Q9NZU7 370 aa13.78□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 APBB1O00213 710 aa13.77□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 TERF2IPQ9NYB0 399 aa13.77□□□□□ -0.2
MSH5-SAPCD1-207ENST00000493662 UPF2Q9HAU5 1272 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 FAM135AQ9P2D6 1515 aa13.75□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 COG6Q9Y2V7 657 aa13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 RRP1P56182 461 aaKnown RBP13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 PODXL2Q9NZ53 605 aa13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 DNMT1P26358 1616 aaKnown RBP13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 NOS1P29475 1434 aa13.74□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 EID1Q9Y6B2 187 aa13.73□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 TESK2Q96S53 571 aa13.73□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 WDR7Q9Y4E6 1490 aa13.72□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 DHX29Q7Z478 1369 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 HDGFP51858 240 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 L1TD1Q5T7N2 865 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 ABCC2Q92887 1545 aa13.72□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 BECN1Q14457 450 aa13.71□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 CDK19Q9BWU1 502 aa13.71□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 MBD5Q9P267 1494 aa13.71□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 BCAR3O75815 825 aa13.71□□□□□ -0.21
MSH5-SAPCD1-207ENST00000493662 ABCC10Q5T3U5 1492 aa13.71□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 NCKAP5LQ9HCH0 1330 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 TCP11L2Q8N4U5 519 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 TSR2Q969E8 191 aaKnown RBP13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 KDM5BQ9UGL1 1544 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 CHD1O14646 1710 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 DENND4BO75064 1496 aaPredicted RBP13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 HAP1P54257 671 aaPredicted RBP13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 PANK1Q8TE04 598 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 SMC4Q9NTJ3 1288 aa13.7□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 RRS1Q15050 365 aaKnown RBP13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 NECTIN2Q92692 538 aa13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 ZNF428Q96B54 188 aa13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 C20orf194Q5TEA3 1177 aa13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 ITPRIPQ8IWB1 547 aa13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 TEX14Q8IWB6 1497 aa13.69□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 SPRYD3Q8NCJ5 442 aa13.68□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 SLC4A3P48751 1232 aa13.68□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 XPCQ01831 940 aaPredicted RBP13.68□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 ITSN2Q9NZM3 1697 aa13.68□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 BRD4O60885 1362 aaPredicted RBP13.67□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 THUMPD2Q9BTF0 503 aaKnown RBP13.67□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 ABCA8O94911 1581 aa13.67□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 PDE4AP27815 886 aa13.67□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 PRAG1Q86YV5 1406 aa13.67□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 ARHGEF12Q9NZN5 1544 aa13.66□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 RIPK4P57078 832 aa13.66□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 AMPHP49418 695 aa13.66□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 SLC52A1Q9NWF4 448 aa13.65□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 COG3Q96JB2 828 aa13.65□□□□□ -0.22
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQG5 324 aaPredicted RBP13.64□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 CARD14Q9BXL6 1004 aa13.64□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 NSD3Q9BZ95 1437 aa13.64□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 A2MP01023 1474 aa13.63□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 PER1O15534 1290 aaPredicted RBP13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 SAMD9LQ8IVG5 1584 aa13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 PDE3BQ13370 1112 aa13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 NFKBIBQ15653 356 aa13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 UGGT1Q9NYU2 1555 aa13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 SLC4A10Q6U841 1118 aa13.62□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 NME9Q86XW9 330 aa13.61□□□□□ -0.23
MSH5-SAPCD1-207ENST00000493662 PRKAR2BP31323 418 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms