RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ANKRD50Q9ULJ7 1429 aa16.31■□□□□ 0.2
COL6A3-214ENST00000493608 ANKLE2Q86XL3 938 aa16.31■□□□□ 0.2
COL6A3-214ENST00000493608 POLR1AO95602 1720 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-214ENST00000493608 LTBP4Q8N2S1 1624 aa16.3■□□□□ 0.2
COL6A3-214ENST00000493608 ARHGAP31Q2M1Z3 1444 aa16.29■□□□□ 0.2
COL6A3-214ENST00000493608 PRKAR2AP13861 404 aaKnown RBP16.29■□□□□ 0.2
COL6A3-214ENST00000493608 SPDYE4A6NLX3 237 aa16.28■□□□□ 0.2
COL6A3-214ENST00000493608 VWDEQ8N2E2 1590 aa16.28■□□□□ 0.2
COL6A3-214ENST00000493608 NEURL4Q96JN8 1562 aa16.27■□□□□ 0.2
COL6A3-214ENST00000493608 UBR1Q8IWV7 1749 aa16.26■□□□□ 0.19
COL6A3-214ENST00000493608 LMTK2Q8IWU2 1503 aa16.25■□□□□ 0.19
COL6A3-214ENST00000493608 IDI1Q13907 227 aa16.25■□□□□ 0.19
COL6A3-214ENST00000493608 STAG3Q9UJ98 1225 aa16.25■□□□□ 0.19
COL6A3-214ENST00000493608 ROCK1Q13464 1354 aa16.25■□□□□ 0.19
COL6A3-214ENST00000493608 NPHP4O75161 1426 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-214ENST00000493608 EFCAB6Q5THR3 1501 aa16.23■□□□□ 0.19
COL6A3-214ENST00000493608 PIK3C2BO00750 1634 aa16.23■□□□□ 0.19
COL6A3-214ENST00000493608 PRR29P0C7W0 189 aa16.22■□□□□ 0.19
COL6A3-214ENST00000493608 LTKP29376 864 aa16.22■□□□□ 0.19
COL6A3-214ENST00000493608 TXNDC2Q86VQ3 553 aa16.22■□□□□ 0.19
COL6A3-214ENST00000493608 SYNMO15061 1565 aa16.21■□□□□ 0.19
COL6A3-214ENST00000493608 HAX1O00165 279 aa16.2■□□□□ 0.18
COL6A3-214ENST00000493608 MED14O60244 1454 aa16.2■□□□□ 0.18
COL6A3-214ENST00000493608 RRBP1Q9P2E9 1410 aaKnown RBP16.19■□□□□ 0.18
COL6A3-214ENST00000493608 IQGAP1P46940 1657 aa16.19■□□□□ 0.18
COL6A3-214ENST00000493608 UNC13BO14795 1591 aa16.19■□□□□ 0.18
COL6A3-214ENST00000493608 SP7Q8TDD2 431 aaPredicted RBP16.19■□□□□ 0.18
COL6A3-214ENST00000493608 NOS1P29475 1434 aa16.19■□□□□ 0.18
COL6A3-214ENST00000493608 TET3O43151 1660 aa16.18■□□□□ 0.18
COL6A3-214ENST00000493608 NUP155O75694 1391 aa16.18■□□□□ 0.18
COL6A3-214ENST00000493608 EID1Q9Y6B2 187 aa16.18■□□□□ 0.18
COL6A3-214ENST00000493608 UBAP1LF5GYI3 381 aa16.17■□□□□ 0.18
COL6A3-214ENST00000493608 GCC2Q8IWJ2 1684 aa16.17■□□□□ 0.18
COL6A3-214ENST00000493608 SCAF11Q99590 1463 aaKnown RBP16.16■□□□□ 0.18
COL6A3-214ENST00000493608 ARHGAP23Q9P227 1491 aa16.16■□□□□ 0.18
COL6A3-214ENST00000493608 CHADLQ6NUI6 762 aa16.16■□□□□ 0.18
COL6A3-214ENST00000493608 SLC52A1Q9NWF4 448 aa16.16■□□□□ 0.18
COL6A3-214ENST00000493608 IQSEC2Q5JU85 1478 aa16.16■□□□□ 0.18
COL6A3-214ENST00000493608 TMEM2Q9UHN6 1383 aa16.15■□□□□ 0.18
COL6A3-214ENST00000493608 SLIT1O75093 1534 aa16.15■□□□□ 0.18
COL6A3-214ENST00000493608 E9PCH4 1651 aa16.15■□□□□ 0.18
COL6A3-214ENST00000493608 MYO5BQ9ULV0 1848 aa16.15■□□□□ 0.18
COL6A3-214ENST00000493608 STRCP1A6NGW2 1772 aa16.14■□□□□ 0.17
COL6A3-214ENST00000493608 CHGAP10645 457 aaKnown RBP16.14■□□□□ 0.17
COL6A3-214ENST00000493608 IQGAP3Q86VI3 1631 aa16.14■□□□□ 0.17
COL6A3-214ENST00000493608 RPRD2Q5VT52 1461 aaKnown RBP16.14■□□□□ 0.17
COL6A3-214ENST00000493608 EVX2Q03828 476 aa16.12■□□□□ 0.17
COL6A3-214ENST00000493608 KDM5AP29375 1690 aaKnown RBP16.11■□□□□ 0.17
COL6A3-214ENST00000493608 ADGRB3O60242 1522 aa16.11■□□□□ 0.17
COL6A3-214ENST00000493608 CPS1P31327 1500 aa16.11■□□□□ 0.17
COL6A3-214ENST00000493608 BCANQ96GW7 911 aa16.11■□□□□ 0.17
COL6A3-214ENST00000493608 NAIPQ13075 1403 aa16.11■□□□□ 0.17
COL6A3-214ENST00000493608 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
COL6A3-214ENST00000493608 PIP4K2BP78356 416 aa16.09■□□□□ 0.17
COL6A3-214ENST00000493608 NUTM2DQ5VT03 806 aaPredicted RBP16.08■□□□□ 0.16
COL6A3-214ENST00000493608 TRIM52Q96A61 297 aa16.08■□□□□ 0.16
COL6A3-214ENST00000493608 TMEM131LA2VDJ0 1609 aa16.07■□□□□ 0.16
COL6A3-214ENST00000493608 PPP1R15AO75807 674 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-214ENST00000493608 LRRC7Q96NW7 1537 aa16.05■□□□□ 0.16
COL6A3-214ENST00000493608 RIMS2Q9UQ26 1411 aa16.05■□□□□ 0.16
COL6A3-214ENST00000493608 C19orf67A6NJJ6 358 aa16.05■□□□□ 0.16
COL6A3-214ENST00000493608 TOM1O60784 492 aa16.05■□□□□ 0.16
COL6A3-214ENST00000493608 PROM2Q8N271 834 aa16.04■□□□□ 0.16
COL6A3-214ENST00000493608 HDGFP51858 240 aaKnown RBP16.03■□□□□ 0.16
COL6A3-214ENST00000493608 RBM33Q96EV2 1170 aaKnown RBP16.03■□□□□ 0.16
COL6A3-214ENST00000493608 HFM1A2PYH4 1435 aa16.02■□□□□ 0.16
COL6A3-214ENST00000493608 ZFYVE9O95405 1425 aa16.02■□□□□ 0.16
COL6A3-214ENST00000493608 SPHKAPQ2M3C7 1700 aa16.02■□□□□ 0.16
COL6A3-214ENST00000493608 KCNA6P17658 529 aa16.01■□□□□ 0.15
COL6A3-214ENST00000493608 XIRP1Q702N8 1843 aaKnown RBP16.01■□□□□ 0.15
COL6A3-214ENST00000493608 ABCF1Q8NE71 845 aaKnown RBP eCLIP16■□□□□ 0.15
COL6A3-214ENST00000493608 ZNF326Q5BKZ1 582 aaKnown RBP15.99■□□□□ 0.15
COL6A3-214ENST00000493608 PROSER2Q86WR7 435 aaPredicted RBP15.99■□□□□ 0.15
COL6A3-214ENST00000493608 PLEKHG1Q9ULL1 1385 aa15.99■□□□□ 0.15
COL6A3-214ENST00000493608 ALKQ9UM73 1620 aa15.98■□□□□ 0.15
COL6A3-214ENST00000493608 HSPA1LP34931 641 aa15.98■□□□□ 0.15
COL6A3-214ENST00000493608 FARP1Q9Y4F1 1045 aaPredicted RBP15.96■□□□□ 0.15
COL6A3-214ENST00000493608 CLTCL1P53675 1640 aa15.96■□□□□ 0.15
COL6A3-214ENST00000493608 CREBZFQ9NS37 354 aa15.95■□□□□ 0.14
COL6A3-214ENST00000493608 TBX22Q9Y458 520 aa15.95■□□□□ 0.14
COL6A3-214ENST00000493608 CHD2O14647 1828 aaKnown RBP15.95■□□□□ 0.14
COL6A3-214ENST00000493608 TMEM94Q12767 1356 aa15.95■□□□□ 0.14
COL6A3-214ENST00000493608 DISP3Q9P2K9 1392 aa15.94■□□□□ 0.14
COL6A3-214ENST00000493608 KIF1BO60333 1816 aa15.93■□□□□ 0.14
COL6A3-214ENST00000493608 ADAMTS13Q76LX8 1427 aa15.93■□□□□ 0.14
COL6A3-214ENST00000493608 TRPM2O94759 1503 aa15.92■□□□□ 0.14
COL6A3-214ENST00000493608 NWD1Q149M9 1564 aa15.91■□□□□ 0.14
COL6A3-214ENST00000493608 MPHOSPH9Q99550 1183 aa15.89■□□□□ 0.13
COL6A3-214ENST00000493608 AMOTL2Q9Y2J4 779 aa15.88■□□□□ 0.13
COL6A3-214ENST00000493608 NKTRP30414 1462 aaKnown RBP15.88■□□□□ 0.13
COL6A3-214ENST00000493608 SETD5Q9C0A6 1442 aa15.87■□□□□ 0.13
COL6A3-214ENST00000493608 NEXMIFQ5QGS0 1516 aa15.87■□□□□ 0.13
COL6A3-214ENST00000493608 NRXN3Q9Y4C0 1643 aa15.86■□□□□ 0.13
COL6A3-214ENST00000493608 PTPRUQ92729 1446 aa15.86■□□□□ 0.13
COL6A3-214ENST00000493608 C14orf37Q86TY3 774 aa15.86■□□□□ 0.13
COL6A3-214ENST00000493608 DIP2AQ14689 1571 aa15.86■□□□□ 0.13
COL6A3-214ENST00000493608 ILDR2Q71H61 639 aa15.85■□□□□ 0.13
COL6A3-214ENST00000493608 MSH6P52701 1360 aa15.85■□□□□ 0.13
COL6A3-214ENST00000493608 RGL3Q3MIN7 710 aa15.84■□□□□ 0.13
COL6A3-214ENST00000493608 METP08581 1390 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms