RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 COL17A1Q9UMD9 1497 aaPredicted RBP14.86□□□□□ -0.03
HDAC4-210ENST00000493582 PDE3AQ14432 1141 aa14.86□□□□□ -0.03
HDAC4-210ENST00000493582 PDZRN3Q9UPQ7 1066 aa14.86□□□□□ -0.03
HDAC4-210ENST00000493582 PCDHB15Q9Y5E8 787 aa14.86□□□□□ -0.03
HDAC4-210ENST00000493582 PBRM1Q86U86 1689 aa14.86□□□□□ -0.03
HDAC4-210ENST00000493582 KIAA1211Q6ZU35 1233 aa14.85□□□□□ -0.03
HDAC4-210ENST00000493582 PRAG1Q86YV5 1406 aa14.85□□□□□ -0.03
HDAC4-210ENST00000493582 TPM2P07951 284 aa14.85□□□□□ -0.03
HDAC4-210ENST00000493582 PRG4Q92954 1404 aaPredicted RBP14.85□□□□□ -0.03
HDAC4-210ENST00000493582 ERBINQ96RT1 1412 aa14.84□□□□□ -0.03
HDAC4-210ENST00000493582 E9PSI1 815 aa14.84□□□□□ -0.03
HDAC4-210ENST00000493582 TARBP1Q13395 1621 aaKnown RBP14.84□□□□□ -0.03
HDAC4-210ENST00000493582 MFAP1P55081 439 aaKnown RBP14.83□□□□□ -0.03
HDAC4-210ENST00000493582 RBM10P98175 930 aaKnown RBP14.83□□□□□ -0.03
HDAC4-210ENST00000493582 TNNQ9UQP3 1299 aa14.83□□□□□ -0.03
HDAC4-210ENST00000493582 C22orf23Q9BZE7 217 aa14.83□□□□□ -0.04
HDAC4-210ENST00000493582 CENPJQ9HC77 1338 aaPredicted RBP14.83□□□□□ -0.04
HDAC4-210ENST00000493582 ADGRL2O95490 1459 aa14.82□□□□□ -0.04
HDAC4-210ENST00000493582 AMER1Q5JTC6 1135 aaPredicted RBP14.82□□□□□ -0.04
HDAC4-210ENST00000493582 CROCC2H7BZ55 1655 aa14.82□□□□□ -0.04
HDAC4-210ENST00000493582 DDX11L8A8MPP1 907 aa14.82□□□□□ -0.04
HDAC4-210ENST00000493582 PMFBP1Q8TBY8 1022 aa14.81□□□□□ -0.04
HDAC4-210ENST00000493582 MAGI2Q86UL8 1455 aa14.8□□□□□ -0.04
HDAC4-210ENST00000493582 GPATCH8Q9UKJ3 1502 aaKnown RBP14.8□□□□□ -0.04
HDAC4-210ENST00000493582 RLBP1P12271 317 aa14.8□□□□□ -0.04
HDAC4-210ENST00000493582 NUP153P49790 1475 aaKnown RBP14.8□□□□□ -0.04
HDAC4-210ENST00000493582 ZNF692Q9BU19 519 aaPredicted RBP14.8□□□□□ -0.04
HDAC4-210ENST00000493582 ADAMTS12P58397 1594 aa14.8□□□□□ -0.04
HDAC4-210ENST00000493582 KDM5DQ9BY66 1539 aa14.8□□□□□ -0.04
HDAC4-210ENST00000493582 CEP170Q5SW79 1584 aa14.79□□□□□ -0.04
HDAC4-210ENST00000493582 BCL2L13Q9BXK5 485 aa14.79□□□□□ -0.04
HDAC4-210ENST00000493582 TRPM1Q7Z4N2 1603 aa14.79□□□□□ -0.04
HDAC4-210ENST00000493582 PRDM4Q9UKN5 801 aa14.79□□□□□ -0.04
HDAC4-210ENST00000493582 ISY1Q9ULR0 285 aaKnown RBP14.79□□□□□ -0.04
HDAC4-210ENST00000493582 GPRASP1Q5JY77 1395 aa14.78□□□□□ -0.04
HDAC4-210ENST00000493582 TNPO1Q92973 898 aaKnown RBP14.78□□□□□ -0.04
HDAC4-210ENST00000493582 CALD1Q05682 793 aaKnown RBP14.77□□□□□ -0.04
HDAC4-210ENST00000493582 NEUROD2Q15784 382 aa14.77□□□□□ -0.04
HDAC4-210ENST00000493582 HSCBQ8IWL3 235 aa14.77□□□□□ -0.04
HDAC4-210ENST00000493582 ITSN2Q9NZM3 1697 aa14.77□□□□□ -0.04
HDAC4-210ENST00000493582 RAPGEF6Q8TEU7 1601 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 CCDC144AA2RUR9 1427 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 TSPY4P0CV99 314 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 TSPY10P0CW01 314 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 RIPK4P57078 832 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 FAM13BQ9NYF5 915 aa14.77□□□□□ -0.05
HDAC4-210ENST00000493582 KIAA0556O60303 1618 aa14.76□□□□□ -0.05
HDAC4-210ENST00000493582 RWDD1Q9H446 243 aaPredicted RBP14.75□□□□□ -0.05
HDAC4-210ENST00000493582 TROQ12816 1431 aaPredicted RBP14.75□□□□□ -0.05
HDAC4-210ENST00000493582 WWC1Q8IX03 1113 aa14.75□□□□□ -0.05
HDAC4-210ENST00000493582 ARID3AQ99856 593 aa14.75□□□□□ -0.05
HDAC4-210ENST00000493582 WDR7Q9Y4E6 1490 aa14.74□□□□□ -0.05
HDAC4-210ENST00000493582 RTEL1-TNFRSF6BF6WH68 1400 aa14.74□□□□□ -0.05
HDAC4-210ENST00000493582 C9orf84Q5VXU9 1444 aa14.74□□□□□ -0.05
HDAC4-210ENST00000493582 RARSP54136 660 aaKnown RBP14.74□□□□□ -0.05
HDAC4-210ENST00000493582 ZSCAN30Q86W11 494 aa14.74□□□□□ -0.05
HDAC4-210ENST00000493582 DISP1Q96F81 1524 aa14.74□□□□□ -0.05
HDAC4-210ENST00000493582 OFD1O75665 1012 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.73□□□□□ -0.059e-7■■□□□ 12.4
HDAC4-210ENST00000493582 FOXD4L1Q9NU39 408 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 CLASP1Q7Z460 1538 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 A0A0U1RQG5 324 aaPredicted RBP14.73□□□□□ -0.05
HDAC4-210ENST00000493582 HNRNPMP52272 730 aaKnown RBP eCLIP14.73□□□□□ -0.051e-6■■■■□ 22.9
HDAC4-210ENST00000493582 RRP7AQ9Y3A4 280 aaKnown RBP14.73□□□□□ -0.05
HDAC4-210ENST00000493582 PDS5BQ9NTI5 1447 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 DDIT3P35638 169 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 A2MP01023 1474 aa14.73□□□□□ -0.05
HDAC4-210ENST00000493582 PRDM15P57071 1507 aaPredicted RBP14.72□□□□□ -0.05
HDAC4-210ENST00000493582 NASPP49321 788 aaPredicted RBP14.72□□□□□ -0.05
HDAC4-210ENST00000493582 R3HCC1Q9Y3T6 440 aaKnown RBP14.72□□□□□ -0.05
HDAC4-210ENST00000493582 NINLQ9Y2I6 1382 aa14.72□□□□□ -0.05
HDAC4-210ENST00000493582 MSNP26038 577 aaKnown RBP14.71□□□□□ -0.05
HDAC4-210ENST00000493582 CCDC173Q0VFZ6 552 aa14.71□□□□□ -0.05
HDAC4-210ENST00000493582 EIF4G3O43432 1585 aaKnown RBP14.71□□□□□ -0.06
HDAC4-210ENST00000493582 GBP4Q96PP9 640 aa14.71□□□□□ -0.06
HDAC4-210ENST00000493582 PTPRGP23470 1445 aa14.7□□□□□ -0.06
HDAC4-210ENST00000493582 PIK3C2GO75747 1445 aa14.7□□□□□ -0.06
HDAC4-210ENST00000493582 PPP1R9BQ96SB3 815 aa14.7□□□□□ -0.06
HDAC4-210ENST00000493582 ADCY10Q96PN6 1610 aa14.7□□□□□ -0.06
HDAC4-210ENST00000493582 ZMYM3Q14202 1370 aa14.69□□□□□ -0.06
HDAC4-210ENST00000493582 HSP90AB1P08238 724 aaKnown RBP14.69□□□□□ -0.06
HDAC4-210ENST00000493582 SKOR2Q2VWA4 1001 aaPredicted RBP14.69□□□□□ -0.06
HDAC4-210ENST00000493582 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.69□□□□□ -0.06
HDAC4-210ENST00000493582 ANP32BQ92688 251 aaKnown RBP14.68□□□□□ -0.06
HDAC4-210ENST00000493582 RAB3GAP1Q15042 981 aa14.68□□□□□ -0.06
HDAC4-210ENST00000493582 CDC42BPAQ5VT25 1732 aa14.68□□□□□ -0.06
HDAC4-210ENST00000493582 PLA2R1Q13018 1463 aa14.67□□□□□ -0.06
HDAC4-210ENST00000493582 AAMPQ13685 434 aa14.67□□□□□ -0.06
HDAC4-210ENST00000493582 SMC5Q8IY18 1101 aa14.67□□□□□ -0.06
HDAC4-210ENST00000493582 FAM135AQ9P2D6 1515 aa14.67□□□□□ -0.06
HDAC4-210ENST00000493582 NCOA3Q9Y6Q9 1424 aa14.66□□□□□ -0.06
HDAC4-210ENST00000493582 ASXL1Q8IXJ9 1541 aa14.66□□□□□ -0.06
HDAC4-210ENST00000493582 ABCC2Q92887 1545 aa14.66□□□□□ -0.06
HDAC4-210ENST00000493582 XPCQ01831 940 aaPredicted RBP14.66□□□□□ -0.06
HDAC4-210ENST00000493582 CD2BP2O95400 341 aaKnown RBP14.65□□□□□ -0.06
HDAC4-210ENST00000493582 MVPQ14764 893 aaKnown RBP14.64□□□□□ -0.07
HDAC4-210ENST00000493582 PRDM10Q9NQV6 1147 aa14.64□□□□□ -0.07
HDAC4-210ENST00000493582 DDX49Q9Y6V7 483 aaKnown RBP14.64□□□□□ -0.07
HDAC4-210ENST00000493582 ABCC10Q5T3U5 1492 aa14.64□□□□□ -0.07
HDAC4-210ENST00000493582 UQCRHLA0A096LP55 91 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms