RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 NLRP1Q9C000 1473 aa14.07□□□□□ -0.16
USP11-211ENST00000489111 NEXMIFQ5QGS0 1516 aa14.07□□□□□ -0.16
USP11-211ENST00000489111 DIEXFQ68CQ4 756 aaKnown RBP14.07□□□□□ -0.16
USP11-211ENST00000489111 A2ML1A8K2U0 1454 aa14.06□□□□□ -0.16
USP11-211ENST00000489111 PIK3C2GO75747 1445 aa14.06□□□□□ -0.16
USP11-211ENST00000489111 NBPF1Q3BBV0 1214 aa14.05□□□□□ -0.16
USP11-211ENST00000489111 ZFYVE9O95405 1425 aa14.05□□□□□ -0.16
USP11-211ENST00000489111 LAMC1P11047 1609 aa14.04□□□□□ -0.16
USP11-211ENST00000489111 C3P01024 1663 aa14.04□□□□□ -0.16
USP11-211ENST00000489111 IFT172Q9UG01 1749 aa14.04□□□□□ -0.16
USP11-211ENST00000489111 CFAP65Q6ZU64 1925 aaKnown RBP14.04□□□□□ -0.16
USP11-211ENST00000489111 RIMS2Q9UQ26 1411 aa14.04□□□□□ -0.16
USP11-211ENST00000489111 NUTM2DQ5VT03 806 aaPredicted RBP14.03□□□□□ -0.16
USP11-211ENST00000489111 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP11-211ENST00000489111 ADAMTSL3P82987 1691 aa14.03□□□□□ -0.16
USP11-211ENST00000489111 RIMS1Q86UR5 1692 aaKnown RBP14.03□□□□□ -0.16
USP11-211ENST00000489111 PPLO60437 1756 aa14.03□□□□□ -0.16
USP11-211ENST00000489111 EIF3AQ14152 1382 aaKnown RBP14.02□□□□□ -0.17
USP11-211ENST00000489111 CFAP70Q5T0N1 1121 aa14.02□□□□□ -0.17
USP11-211ENST00000489111 SCAF11Q99590 1463 aaKnown RBP14.01□□□□□ -0.17
USP11-211ENST00000489111 HDGFP51858 240 aaKnown RBP14.01□□□□□ -0.17
USP11-211ENST00000489111 C14orf93Q9H972 538 aaKnown RBP14□□□□□ -0.17
USP11-211ENST00000489111 KIAA1210Q9ULL0 1709 aa14□□□□□ -0.17
USP11-211ENST00000489111 TMEM2Q9UHN6 1383 aa13.99□□□□□ -0.17
USP11-211ENST00000489111 ST20-MTHFSA0A0A6YYL1 179 aa13.99□□□□□ -0.17
USP11-211ENST00000489111 KDM5AP29375 1690 aaKnown RBP13.98□□□□□ -0.17
USP11-211ENST00000489111 SETBP1Q9Y6X0 1596 aa13.98□□□□□ -0.17
USP11-211ENST00000489111 MYO3AQ8NEV4 1616 aa13.97□□□□□ -0.17
USP11-211ENST00000489111 CCDC7Q96M83 1385 aa13.96□□□□□ -0.17
USP11-211ENST00000489111 WASHC2AQ641Q2 1341 aa13.96□□□□□ -0.17
USP11-211ENST00000489111 PTPRMP28827 1452 aa13.96□□□□□ -0.17
USP11-211ENST00000489111 UBR1Q8IWV7 1749 aa13.95□□□□□ -0.18
USP11-211ENST00000489111 DDX10Q13206 875 aaKnown RBP13.95□□□□□ -0.18
USP11-211ENST00000489111 THEMISQ8N1K5 641 aaPredicted RBP13.95□□□□□ -0.18
USP11-211ENST00000489111 SENP3Q9H4L4 574 aaPredicted RBP13.95□□□□□ -0.18
USP11-211ENST00000489111 EID1Q9Y6B2 187 aa13.95□□□□□ -0.18
USP11-211ENST00000489111 ADGRB1O14514 1584 aa13.95□□□□□ -0.18
USP11-211ENST00000489111 KIF7Q2M1P5 1343 aa13.94□□□□□ -0.18
USP11-211ENST00000489111 BCANQ96GW7 911 aa13.94□□□□□ -0.18
USP11-211ENST00000489111 CEP170BQ9Y4F5 1589 aaPredicted RBP13.94□□□□□ -0.18
USP11-211ENST00000489111 MYO5BQ9ULV0 1848 aa13.94□□□□□ -0.18
USP11-211ENST00000489111 IQGAP1P46940 1657 aa13.94□□□□□ -0.18
USP11-211ENST00000489111 POLR3GLQ9BT43 218 aa13.93□□□□□ -0.18
USP11-211ENST00000489111 SLIT1O75093 1534 aa13.92□□□□□ -0.18
USP11-211ENST00000489111 TMEM132EQ6IEE7 984 aa13.92□□□□□ -0.18
USP11-211ENST00000489111 ARHGAP23Q9P227 1491 aa13.92□□□□□ -0.18
USP11-211ENST00000489111 C11orf95C9JLR9 678 aaPredicted RBP13.91□□□□□ -0.18
USP11-211ENST00000489111 SLC24A1O60721 1099 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 TMF1P82094 1093 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 TXNDC2Q86VQ3 553 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 TESK2Q96S53 571 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 TRAK1Q9UPV9 953 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 PLEKHG1Q9ULL1 1385 aa13.91□□□□□ -0.18
USP11-211ENST00000489111 CENPJQ9HC77 1338 aaPredicted RBP13.9□□□□□ -0.18
USP11-211ENST00000489111 ALKQ9UM73 1620 aa13.9□□□□□ -0.18
USP11-211ENST00000489111 ASXL1Q8IXJ9 1541 aa13.9□□□□□ -0.19
USP11-211ENST00000489111 CDCA8Q53HL2 280 aa13.89□□□□□ -0.19
USP11-211ENST00000489111 YTHDC2Q9H6S0 1430 aaKnown RBP13.89□□□□□ -0.19
USP11-211ENST00000489111 ZNF142P52746 1687 aaPredicted RBP13.88□□□□□ -0.19
USP11-211ENST00000489111 DISP3Q9P2K9 1392 aa13.88□□□□□ -0.19
USP11-211ENST00000489111 LTKP29376 864 aa13.88□□□□□ -0.19
USP11-211ENST00000489111 STK26Q9P289 416 aa13.88□□□□□ -0.19
USP11-211ENST00000489111 SBNO2Q9Y2G9 1366 aa13.87□□□□□ -0.19
USP11-211ENST00000489111 LRPPRCP42704 1394 aaKnown RBP13.86□□□□□ -0.19
USP11-211ENST00000489111 ANKLE2Q86XL3 938 aa13.85□□□□□ -0.19
USP11-211ENST00000489111 NRXN3Q9Y4C0 1643 aa13.85□□□□□ -0.19
USP11-211ENST00000489111 ADAMTS13Q76LX8 1427 aa13.84□□□□□ -0.19
USP11-211ENST00000489111 POGKQ9P215 609 aa13.84□□□□□ -0.19
USP11-211ENST00000489111 METP08581 1390 aa13.83□□□□□ -0.19
USP11-211ENST00000489111 ANP32CO43423 234 aa13.83□□□□□ -0.2
USP11-211ENST00000489111 MIER1Q8N108 512 aa13.83□□□□□ -0.2
USP11-211ENST00000489111 PRAM1Q96QH2 718 aa13.83□□□□□ -0.2
USP11-211ENST00000489111 POLR1AO95602 1720 aaPredicted RBP13.83□□□□□ -0.2
USP11-211ENST00000489111 DIP2AQ14689 1571 aa13.83□□□□□ -0.2
USP11-211ENST00000489111 ABCC11Q96J66 1382 aa13.83□□□□□ -0.2
USP11-211ENST00000489111 DLC1Q96QB1 1528 aa13.82□□□□□ -0.2
USP11-211ENST00000489111 KDM4FA0A1W2PPD8 638 aa13.81□□□□□ -0.2
USP11-211ENST00000489111 SAFB2Q14151 953 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP11-211ENST00000489111 SLC26A8Q96RN1 970 aa13.81□□□□□ -0.2
USP11-211ENST00000489111 TBX22Q9Y458 520 aa13.8□□□□□ -0.2
USP11-211ENST00000489111 SETD1AO15047 1707 aaKnown RBP13.8□□□□□ -0.2
USP11-211ENST00000489111 ARHGEF28Q8N1W1 1705 aaKnown RBP13.8□□□□□ -0.2
USP11-211ENST00000489111 EVC2Q86UK5 1308 aa13.8□□□□□ -0.2
USP11-211ENST00000489111 TECPR2O15040 1411 aa13.8□□□□□ -0.2
USP11-211ENST00000489111 MED14O60244 1454 aa13.8□□□□□ -0.2
USP11-211ENST00000489111 QRICH2Q9H0J4 1663 aa13.79□□□□□ -0.2
USP11-211ENST00000489111 FAM135BQ49AJ0 1406 aa13.78□□□□□ -0.2
USP11-211ENST00000489111 NPHP4O75161 1426 aaPredicted RBP13.77□□□□□ -0.21
USP11-211ENST00000489111 CPS1P31327 1500 aa13.77□□□□□ -0.21
USP11-211ENST00000489111 MINK1Q8N4C8 1332 aaPredicted RBP13.77□□□□□ -0.21
USP11-211ENST00000489111 PIK3R4Q99570 1358 aa13.76□□□□□ -0.21
USP11-211ENST00000489111 SIRT1Q96EB6 747 aa13.76□□□□□ -0.21
USP11-211ENST00000489111 TULP4Q9NRJ4 1543 aa13.75□□□□□ -0.21
USP11-211ENST00000489111 SETD1BQ9UPS6 1966 aaKnown RBP13.75□□□□□ -0.21
USP11-211ENST00000489111 PTCH1Q13635 1447 aa13.74□□□□□ -0.21
USP11-211ENST00000489111 ROBO2Q9HCK4 1378 aa13.74□□□□□ -0.21
USP11-211ENST00000489111 PLEKHH1Q9ULM0 1364 aa13.74□□□□□ -0.21
USP11-211ENST00000489111 KNDC1Q76NI1 1749 aa13.74□□□□□ -0.21
USP11-211ENST00000489111 SRPK2P78362 688 aaKnown RBP13.74□□□□□ -0.21
USP11-211ENST00000489111 WAPLQ7Z5K2 1190 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms