RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 IQGAP1P46940 1657 aa13.29□□□□□ -0.28
COL12A1-208ENST00000486533 VWDEQ8N2E2 1590 aa13.29□□□□□ -0.28
COL12A1-208ENST00000486533 MED14O60244 1454 aa13.29□□□□□ -0.28
COL12A1-208ENST00000486533 PELP1Q8IZL8 1130 aaKnown RBP13.28□□□□□ -0.28
COL12A1-208ENST00000486533 EFCAB6Q5THR3 1501 aa13.28□□□□□ -0.28
COL12A1-208ENST00000486533 UBAP1LF5GYI3 381 aa13.28□□□□□ -0.28
COL12A1-208ENST00000486533 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
COL12A1-208ENST00000486533 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
COL12A1-208ENST00000486533 PIK3C2BO00750 1634 aa13.27□□□□□ -0.28
COL12A1-208ENST00000486533 ITGAEP38570 1179 aa13.27□□□□□ -0.29
COL12A1-208ENST00000486533 CPS1P31327 1500 aa13.27□□□□□ -0.29
COL12A1-208ENST00000486533 SCAF11Q99590 1463 aaKnown RBP13.26□□□□□ -0.29
COL12A1-208ENST00000486533 SYNMO15061 1565 aa13.24□□□□□ -0.29
COL12A1-208ENST00000486533 ROCK1Q13464 1354 aa13.24□□□□□ -0.29
COL12A1-208ENST00000486533 SLIT1O75093 1534 aa13.24□□□□□ -0.29
COL12A1-208ENST00000486533 TXNDC2Q86VQ3 553 aa13.24□□□□□ -0.29
COL12A1-208ENST00000486533 EID1Q9Y6B2 187 aa13.24□□□□□ -0.29
COL12A1-208ENST00000486533 ARHGAP23Q9P227 1491 aa13.23□□□□□ -0.29
COL12A1-208ENST00000486533 LTKP29376 864 aa13.23□□□□□ -0.29
COL12A1-208ENST00000486533 IDI1Q13907 227 aa13.23□□□□□ -0.29
COL12A1-208ENST00000486533 CHRDL2Q6WN34 429 aa13.23□□□□□ -0.29
COL12A1-208ENST00000486533 NOS1P29475 1434 aa13.23□□□□□ -0.29
COL12A1-208ENST00000486533 UNC13BO14795 1591 aa13.22□□□□□ -0.29
COL12A1-208ENST00000486533 TET3O43151 1660 aa13.22□□□□□ -0.29
COL12A1-208ENST00000486533 TMEM2Q9UHN6 1383 aa13.22□□□□□ -0.29
COL12A1-208ENST00000486533 RPRD2Q5VT52 1461 aaKnown RBP13.22□□□□□ -0.29
COL12A1-208ENST00000486533 KDM5AP29375 1690 aaKnown RBP13.22□□□□□ -0.29
COL12A1-208ENST00000486533 GCC2Q8IWJ2 1684 aa13.21□□□□□ -0.29
COL12A1-208ENST00000486533 STRCP1A6NGW2 1772 aa13.2□□□□□ -0.3
COL12A1-208ENST00000486533 ADGRB3O60242 1522 aa13.2□□□□□ -0.3
COL12A1-208ENST00000486533 SLC52A1Q9NWF4 448 aa13.2□□□□□ -0.3
COL12A1-208ENST00000486533 TOM1O60784 492 aa13.19□□□□□ -0.3
COL12A1-208ENST00000486533 CENPBP07199 599 aaPredicted RBP13.19□□□□□ -0.3
COL12A1-208ENST00000486533 PIP4K2BP78356 416 aa13.19□□□□□ -0.3
COL12A1-208ENST00000486533 IQGAP3Q86VI3 1631 aa13.17□□□□□ -0.3
COL12A1-208ENST00000486533 E9PCH4 1651 aa13.17□□□□□ -0.3
COL12A1-208ENST00000486533 NUP155O75694 1391 aa13.17□□□□□ -0.3
COL12A1-208ENST00000486533 LRRC7Q96NW7 1537 aa13.16□□□□□ -0.3
COL12A1-208ENST00000486533 DISP3Q9P2K9 1392 aa13.16□□□□□ -0.3
COL12A1-208ENST00000486533 MYO5BQ9ULV0 1848 aa13.15□□□□□ -0.3
COL12A1-208ENST00000486533 RRBP1Q9P2E9 1410 aaKnown RBP13.15□□□□□ -0.3
COL12A1-208ENST00000486533 REM2Q8IYK8 340 aaPredicted RBP13.15□□□□□ -0.3
COL12A1-208ENST00000486533 BCANQ96GW7 911 aa13.15□□□□□ -0.3
COL12A1-208ENST00000486533 CHGAP10645 457 aaKnown RBP13.14□□□□□ -0.31
COL12A1-208ENST00000486533 DIEXFQ68CQ4 756 aaKnown RBP13.14□□□□□ -0.31
COL12A1-208ENST00000486533 MKRN4PQ13434 485 aaPredicted RBP13.13□□□□□ -0.31
COL12A1-208ENST00000486533 SLC26A8Q96RN1 970 aa13.13□□□□□ -0.31
COL12A1-208ENST00000486533 TMEM131LA2VDJ0 1609 aa13.13□□□□□ -0.31
COL12A1-208ENST00000486533 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
COL12A1-208ENST00000486533 PPP1R15AO75807 674 aaPredicted RBP13.12□□□□□ -0.31
COL12A1-208ENST00000486533 HSPA1LP34931 641 aa13.11□□□□□ -0.31
COL12A1-208ENST00000486533 ALKQ9UM73 1620 aa13.11□□□□□ -0.31
COL12A1-208ENST00000486533 HDGFP51858 240 aaKnown RBP13.11□□□□□ -0.31
COL12A1-208ENST00000486533 ZFYVE9O95405 1425 aa13.1□□□□□ -0.31
COL12A1-208ENST00000486533 RIMS2Q9UQ26 1411 aa13.1□□□□□ -0.31
COL12A1-208ENST00000486533 XIRP1Q702N8 1843 aaKnown RBP13.09□□□□□ -0.31
COL12A1-208ENST00000486533 ZNF316A6NFI3 1004 aaPredicted RBP13.09□□□□□ -0.31
COL12A1-208ENST00000486533 PLEKHG1Q9ULL1 1385 aa13.08□□□□□ -0.31
COL12A1-208ENST00000486533 SPDYE2BA6NHP3 402 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 SPDYE6P0CI01 402 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 KCNA6P17658 529 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 SPDYE2Q495Y8 402 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 NAIPQ13075 1403 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 SPHKAPQ2M3C7 1700 aa13.08□□□□□ -0.32
COL12A1-208ENST00000486533 NUTM2DQ5VT03 806 aaPredicted RBP13.07□□□□□ -0.32
COL12A1-208ENST00000486533 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL12A1-208ENST00000486533 TMEM94Q12767 1356 aa13.07□□□□□ -0.32
COL12A1-208ENST00000486533 PROSER2Q86WR7 435 aaPredicted RBP13.07□□□□□ -0.32
COL12A1-208ENST00000486533 RBM33Q96EV2 1170 aaKnown RBP13.06□□□□□ -0.32
COL12A1-208ENST00000486533 NKTRP30414 1462 aaKnown RBP13.06□□□□□ -0.32
COL12A1-208ENST00000486533 ACIN1Q9UKV3 1341 aaKnown RBP13.06□□□□□ -0.32
COL12A1-208ENST00000486533 NWD1Q149M9 1564 aa13.05□□□□□ -0.32
COL12A1-208ENST00000486533 HFM1A2PYH4 1435 aa13.04□□□□□ -0.32
COL12A1-208ENST00000486533 ILDR2Q71H61 639 aa13.03□□□□□ -0.32
COL12A1-208ENST00000486533 TRIM52Q96A61 297 aa13.03□□□□□ -0.32
COL12A1-208ENST00000486533 CHD2O14647 1828 aaKnown RBP13.03□□□□□ -0.32
COL12A1-208ENST00000486533 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
COL12A1-208ENST00000486533 TBX22Q9Y458 520 aa13.02□□□□□ -0.33
COL12A1-208ENST00000486533 DIP2AQ14689 1571 aa13.01□□□□□ -0.33
COL12A1-208ENST00000486533 PITPNM1O00562 1244 aa13.01□□□□□ -0.33
COL12A1-208ENST00000486533 ADAMTS13Q76LX8 1427 aa13.01□□□□□ -0.33
COL12A1-208ENST00000486533 TRPM2O94759 1503 aa13.01□□□□□ -0.33
COL12A1-208ENST00000486533 MED1Q15648 1581 aaPredicted RBP13.01□□□□□ -0.33
COL12A1-208ENST00000486533 CLTCL1P53675 1640 aa13.01□□□□□ -0.33
COL12A1-208ENST00000486533 MSH6P52701 1360 aa13□□□□□ -0.33
COL12A1-208ENST00000486533 KIF1BO60333 1816 aa12.99□□□□□ -0.33
COL12A1-208ENST00000486533 C14orf37Q86TY3 774 aa12.98□□□□□ -0.33
COL12A1-208ENST00000486533 ROBO1Q9Y6N7 1651 aa12.98□□□□□ -0.33
COL12A1-208ENST00000486533 FAM135BQ49AJ0 1406 aa12.97□□□□□ -0.33
COL12A1-208ENST00000486533 PIK3R4Q99570 1358 aa12.97□□□□□ -0.33
COL12A1-208ENST00000486533 NRXN3Q9Y4C0 1643 aa12.96□□□□□ -0.34
COL12A1-208ENST00000486533 SETBP1Q9Y6X0 1596 aa12.96□□□□□ -0.34
COL12A1-208ENST00000486533 AMOTL2Q9Y2J4 779 aa12.95□□□□□ -0.34
COL12A1-208ENST00000486533 NEXMIFQ5QGS0 1516 aa12.95□□□□□ -0.34
COL12A1-208ENST00000486533 SLAIN2Q9P270 581 aa12.94□□□□□ -0.34
COL12A1-208ENST00000486533 SSUH2Q9Y2M2 353 aa12.94□□□□□ -0.34
COL12A1-208ENST00000486533 SOCS7O14512 581 aa12.94□□□□□ -0.34
COL12A1-208ENST00000486533 PIP4P2Q8N4L2 257 aa12.94□□□□□ -0.34
COL12A1-208ENST00000486533 PTPRUQ92729 1446 aa12.94□□□□□ -0.34
COL12A1-208ENST00000486533 NCOA3Q9Y6Q9 1424 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms