RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 RBM46Q8TBY0 533 aaKnown RBP9.54□□□□□ -0.88
VPS13A-211ENST00000484581 ZNF516Q92618 1163 aa9.52□□□□□ -0.89
VPS13A-211ENST00000484581 SEMA3EO15041 775 aa9.51□□□□□ -0.89
VPS13A-211ENST00000484581 DNAJB2P25686 324 aa9.51□□□□□ -0.89
VPS13A-211ENST00000484581 COPS2P61201 443 aa9.51□□□□□ -0.89
VPS13A-211ENST00000484581 PRR14Q9BWN1 585 aa9.51□□□□□ -0.89
VPS13A-211ENST00000484581 FCHSD2O94868 740 aa9.5□□□□□ -0.89
VPS13A-211ENST00000484581 ZNF787Q6DD87 383 aa9.5□□□□□ -0.89
VPS13A-211ENST00000484581 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.49□□□□□ -0.89
VPS13A-211ENST00000484581 ADGRG1Q9Y653 693 aa9.49□□□□□ -0.89
VPS13A-211ENST00000484581 GGCXP38435 758 aa9.48□□□□□ -0.89
VPS13A-211ENST00000484581 PDZRN3Q9UPQ7 1066 aa9.48□□□□□ -0.89
VPS13A-211ENST00000484581 SMYD5Q6GMV2 418 aa9.47□□□□□ -0.89
VPS13A-211ENST00000484581 RCCD1A6NED2 376 aa9.46□□□□□ -0.9
VPS13A-211ENST00000484581 FAM161AQ3B820 660 aa9.46□□□□□ -0.9
VPS13A-211ENST00000484581 NKX2-3Q8TAU0 364 aa9.46□□□□□ -0.9
VPS13A-211ENST00000484581 TMEM134Q9H6X4 195 aa9.46□□□□□ -0.9
VPS13A-211ENST00000484581 PCDHB3Q9Y5E6 796 aa9.46□□□□□ -0.9
VPS13A-211ENST00000484581 ZPR1O75312 459 aa9.44□□□□□ -0.9
VPS13A-211ENST00000484581 OATP04181 439 aa9.44□□□□□ -0.9
VPS13A-211ENST00000484581 ZNF775Q96BV0 537 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-211ENST00000484581 KMT5BQ4FZB7 885 aa9.43□□□□□ -0.9
VPS13A-211ENST00000484581 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.42□□□□□ -0.9
VPS13A-211ENST00000484581 TESPA1A2RU30 521 aaPredicted RBP9.41□□□□□ -0.9
VPS13A-211ENST00000484581 HIC1Q14526 733 aa9.41□□□□□ -0.9
VPS13A-211ENST00000484581 TMUB1Q9BVT8 246 aa9.41□□□□□ -0.9
VPS13A-211ENST00000484581 RBM26Q5T8P6 1007 aaKnown RBP9.4□□□□□ -0.9
VPS13A-211ENST00000484581 RSPH4AQ5TD94 716 aa9.4□□□□□ -0.9
VPS13A-211ENST00000484581 BLOC1S3Q6QNY0 202 aa9.4□□□□□ -0.9
VPS13A-211ENST00000484581 ACTN4O43707 911 aaKnown RBP9.39□□□□□ -0.91
VPS13A-211ENST00000484581 CFHP08603 1231 aa9.39□□□□□ -0.91
VPS13A-211ENST00000484581 PXYLP1Q8TE99 480 aa9.38□□□□□ -0.91
VPS13A-211ENST00000484581 GNPATO15228 680 aa9.36□□□□□ -0.91
VPS13A-211ENST00000484581 NR1I2O75469 434 aa9.35□□□□□ -0.91
VPS13A-211ENST00000484581 SLC10A3P09131 477 aa9.35□□□□□ -0.91
VPS13A-211ENST00000484581 TRIM67Q6ZTA4 783 aa9.35□□□□□ -0.91
VPS13A-211ENST00000484581 METTL3Q86U44 580 aaKnown RBP9.34□□□□□ -0.91
VPS13A-211ENST00000484581 RNF223E7ERA6 249 aa9.32□□□□□ -0.92
VPS13A-211ENST00000484581 TLL1O43897 1013 aa9.32□□□□□ -0.92
VPS13A-211ENST00000484581 SLC19A1P41440 591 aa9.32□□□□□ -0.92
VPS13A-211ENST00000484581 FECHP22830 423 aa9.3□□□□□ -0.92
VPS13A-211ENST00000484581 MYT1Q01538 1121 aa9.3□□□□□ -0.92
VPS13A-211ENST00000484581 RDH13Q8NBN7 331 aa9.3□□□□□ -0.92
VPS13A-211ENST00000484581 EMID1Q96A84 441 aaPredicted RBP9.3□□□□□ -0.92
VPS13A-211ENST00000484581 DAXXQ9UER7 740 aaPredicted RBP9.3□□□□□ -0.92
VPS13A-211ENST00000484581 S1PR4O95977 384 aa9.29□□□□□ -0.92
VPS13A-211ENST00000484581 PKDCCQ504Y2 493 aa9.29□□□□□ -0.92
VPS13A-211ENST00000484581 ADH1BP00325 375 aa9.28□□□□□ -0.92
VPS13A-211ENST00000484581 GPIHBP1Q8IV16 184 aa9.28□□□□□ -0.92
VPS13A-211ENST00000484581 SCUBE3Q8IX30 993 aa9.28□□□□□ -0.92
VPS13A-211ENST00000484581 ANKLE1Q8NAG6 615 aa9.28□□□□□ -0.92
VPS13A-211ENST00000484581 DDX11L8A8MPP1 907 aa9.27□□□□□ -0.93
VPS13A-211ENST00000484581 POTECB2RU33 542 aa9.27□□□□□ -0.93
VPS13A-211ENST00000484581 PPEF1O14829 653 aaPredicted RBP9.27□□□□□ -0.93
VPS13A-211ENST00000484581 DGAT1O75907 488 aa9.27□□□□□ -0.93
VPS13A-211ENST00000484581 PUS10Q3MIT2 529 aaKnown RBP9.27□□□□□ -0.93
VPS13A-211ENST00000484581 TULP1O00294 542 aaPredicted RBP9.26□□□□□ -0.93
VPS13A-211ENST00000484581 GPR37O15354 613 aa9.26□□□□□ -0.93
VPS13A-211ENST00000484581 SLC6A16Q9GZN6 736 aa9.26□□□□□ -0.93
VPS13A-211ENST00000484581 PRR20EP86478 221 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 PRR20CP86479 221 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 PRR20DP86480 221 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 PRR20BP86481 221 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 PRR20AP86496 221 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 SPRYD7Q5W111 196 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 SULF1Q8IWU6 871 aa9.25□□□□□ -0.93
VPS13A-211ENST00000484581 ZNF598Q86UK7 904 aaKnown RBP9.24□□□□□ -0.93
VPS13A-211ENST00000484581 NLRP7Q8WX94 980 aa9.24□□□□□ -0.93
VPS13A-211ENST00000484581 SPSB2Q99619 263 aa9.24□□□□□ -0.93
VPS13A-211ENST00000484581 ATP6V1AP38606 617 aa9.22□□□□□ -0.93
VPS13A-211ENST00000484581 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.94
VPS13A-211ENST00000484581 GCGRP47871 477 aa9.2□□□□□ -0.94
VPS13A-211ENST00000484581 FUT2Q10981 343 aa9.2□□□□□ -0.94
VPS13A-211ENST00000484581 MORN1Q5T089 497 aa9.2□□□□□ -0.94
VPS13A-211ENST00000484581 ZNF697Q5TEC3 545 aa9.2□□□□□ -0.94
VPS13A-211ENST00000484581 PHOX2BQ99453 314 aa9.2□□□□□ -0.94
VPS13A-211ENST00000484581 FAM187AA6NFU0 413 aa9.19□□□□□ -0.94
VPS13A-211ENST00000484581 LCE2AQ5TA79 106 aaPredicted RBP9.19□□□□□ -0.94
VPS13A-211ENST00000484581 FMNL1O95466 1100 aaPredicted RBP9.18□□□□□ -0.94
VPS13A-211ENST00000484581 GRIPAP1Q4V328 841 aa9.18□□□□□ -0.94
VPS13A-211ENST00000484581 TREML4Q6UXN2 200 aa9.18□□□□□ -0.94
VPS13A-211ENST00000484581 TNFRSF10AO00220 468 aa9.17□□□□□ -0.94
VPS13A-211ENST00000484581 GDF9O60383 454 aa9.17□□□□□ -0.94
VPS13A-211ENST00000484581 TIMELESSQ9UNS1 1208 aa9.17□□□□□ -0.94
VPS13A-211ENST00000484581 SLC27A5Q9Y2P5 690 aa9.17□□□□□ -0.94
VPS13A-211ENST00000484581 GTF3C3Q9Y5Q9 886 aa9.16□□□□□ -0.94
VPS13A-211ENST00000484581 ST8SIA5O15466 376 aa9.15□□□□□ -0.94
VPS13A-211ENST00000484581 MAP2K5Q13163 448 aa9.15□□□□□ -0.94
VPS13A-211ENST00000484581 PLA2G2CQ5R387 149 aa9.15□□□□□ -0.94
VPS13A-211ENST00000484581 THAP11Q96EK4 314 aa9.15□□□□□ -0.94
VPS13A-211ENST00000484581 TMEM132AQ24JP5 1023 aa9.14□□□□□ -0.95
VPS13A-211ENST00000484581 ERICH6Q7L0X2 663 aa9.14□□□□□ -0.95
VPS13A-211ENST00000484581 AAASQ9NRG9 546 aa9.14□□□□□ -0.95
VPS13A-211ENST00000484581 SALL2Q9Y467 1007 aaPredicted RBP9.14□□□□□ -0.95
VPS13A-211ENST00000484581 IRF6O14896 467 aa9.13□□□□□ -0.95
VPS13A-211ENST00000484581 CD2BP2O95400 341 aaKnown RBP9.13□□□□□ -0.95
VPS13A-211ENST00000484581 RPIAP49247 311 aa9.12□□□□□ -0.95
VPS13A-211ENST00000484581 FOXC1Q12948 553 aa9.12□□□□□ -0.95
VPS13A-211ENST00000484581 BRICD5Q6PL45 260 aa9.12□□□□□ -0.95
VPS13A-211ENST00000484581 FAM160A2Q8N612 972 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms