RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MLECQ14165 292 aa19.78■□□□□ 0.76
CHD3-211ENST00000481999 MYT1Q01538 1121 aa19.77■□□□□ 0.76
CHD3-211ENST00000481999 FKBP8Q14318 412 aa19.77■□□□□ 0.76
CHD3-211ENST00000481999 NEFLP07196 543 aa19.76■□□□□ 0.75
CHD3-211ENST00000481999 FBXO31Q5XUX0 539 aaPredicted RBP19.76■□□□□ 0.75
CHD3-211ENST00000481999 LAMC1P11047 1609 aa19.76■□□□□ 0.75
CHD3-211ENST00000481999 ZMYM4Q5VZL5 1548 aa19.76■□□□□ 0.75
CHD3-211ENST00000481999 ADGRB3O60242 1522 aa19.74■□□□□ 0.75
CHD3-211ENST00000481999 SYNMO15061 1565 aa19.74■□□□□ 0.75
CHD3-211ENST00000481999 IDI1Q13907 227 aa19.73■□□□□ 0.75
CHD3-211ENST00000481999 IQGAP1P46940 1657 aa19.73■□□□□ 0.75
CHD3-211ENST00000481999 TMF1P82094 1093 aa19.72■□□□□ 0.75
CHD3-211ENST00000481999 TMEM132EQ6IEE7 984 aa19.72■□□□□ 0.75
CHD3-211ENST00000481999 PANK3Q9H999 370 aa19.72■□□□□ 0.75
CHD3-211ENST00000481999 IFT172Q9UG01 1749 aa19.72■□□□□ 0.75
CHD3-211ENST00000481999 SCAF11Q99590 1463 aaKnown RBP19.71■□□□□ 0.75
CHD3-211ENST00000481999 CC2D1BQ5T0F9 858 aaKnown RBP19.71■□□□□ 0.75
CHD3-211ENST00000481999 PER1O15534 1290 aaPredicted RBP19.7■□□□□ 0.74
CHD3-211ENST00000481999 TSHZ2Q9NRE2 1034 aa19.7■□□□□ 0.74
CHD3-211ENST00000481999 MYOM2P54296 1465 aa19.69■□□□□ 0.74
CHD3-211ENST00000481999 BCANQ96GW7 911 aa19.68■□□□□ 0.74
CHD3-211ENST00000481999 ARHGEF40Q8TER5 1519 aa19.68■□□□□ 0.74
CHD3-211ENST00000481999 TRAK1Q9UPV9 953 aa19.67■□□□□ 0.74
CHD3-211ENST00000481999 NEURL4Q96JN8 1562 aa19.66■□□□□ 0.74
CHD3-211ENST00000481999 PPLO60437 1756 aa19.66■□□□□ 0.74
CHD3-211ENST00000481999 STAC3Q96MF2 364 aa19.65■□□□□ 0.74
CHD3-211ENST00000481999 NRXN1Q9ULB1 1477 aa19.65■□□□□ 0.74
CHD3-211ENST00000481999 PIK3C2GO75747 1445 aa19.64■□□□□ 0.73
CHD3-211ENST00000481999 MYO5BQ9ULV0 1848 aa19.64■□□□□ 0.73
CHD3-211ENST00000481999 PIK3C2BO00750 1634 aa19.64■□□□□ 0.73
CHD3-211ENST00000481999 TMC1Q8TDI8 760 aa19.63■□□□□ 0.73
CHD3-211ENST00000481999 ARHGAP31Q2M1Z3 1444 aa19.62■□□□□ 0.73
CHD3-211ENST00000481999 PREX1Q8TCU6 1659 aa19.61■□□□□ 0.73
CHD3-211ENST00000481999 ZC3H13Q5T200 1668 aaKnown RBP19.61■□□□□ 0.73
CHD3-211ENST00000481999 KIAA1210Q9ULL0 1709 aa19.61■□□□□ 0.73
CHD3-211ENST00000481999 C14orf93Q9H972 538 aaKnown RBP19.6■□□□□ 0.73
CHD3-211ENST00000481999 PNISRQ8TF01 805 aaKnown RBP19.59■□□□□ 0.73
CHD3-211ENST00000481999 MYBBP1AQ9BQG0 1328 aaKnown RBP19.59■□□□□ 0.73
CHD3-211ENST00000481999 NEXMIFQ5QGS0 1516 aa19.59■□□□□ 0.73
CHD3-211ENST00000481999 CLTCQ00610 1675 aaKnown RBP19.59■□□□□ 0.73
CHD3-211ENST00000481999 SAFB2Q14151 953 aaKnown RBP eCLIP19.59■□□□□ 0.73
CHD3-211ENST00000481999 KTN1Q86UP2 1357 aaKnown RBP19.59■□□□□ 0.73
CHD3-211ENST00000481999 EIF3AQ14152 1382 aaKnown RBP19.58■□□□□ 0.73
CHD3-211ENST00000481999 PARD3Q8TEW0 1356 aa19.58■□□□□ 0.72
CHD3-211ENST00000481999 ADGRB1O14514 1584 aa19.57■□□□□ 0.72
CHD3-211ENST00000481999 ERVK-7P63135 1459 aa19.57■□□□□ 0.72
CHD3-211ENST00000481999 IRX6P78412 446 aaPredicted RBP19.56■□□□□ 0.72
CHD3-211ENST00000481999 RALBP1Q15311 655 aa19.56■□□□□ 0.72
CHD3-211ENST00000481999 SLC52A1Q9NWF4 448 aa19.56■□□□□ 0.72
CHD3-211ENST00000481999 STK26Q9P289 416 aa19.56■□□□□ 0.72
CHD3-211ENST00000481999 MYOM1P52179 1685 aa19.55■□□□□ 0.72
CHD3-211ENST00000481999 REREQ9P2R6 1566 aa19.54■□□□□ 0.72
CHD3-211ENST00000481999 CENPJQ9HC77 1338 aaPredicted RBP19.54■□□□□ 0.72
CHD3-211ENST00000481999 VGFO15240 615 aaPredicted RBP19.54■□□□□ 0.72
CHD3-211ENST00000481999 TMEM131LA2VDJ0 1609 aa19.53■□□□□ 0.72
CHD3-211ENST00000481999 STAG3Q9UJ98 1225 aa19.53■□□□□ 0.72
CHD3-211ENST00000481999 RPGRIP1LQ68CZ1 1315 aa19.53■□□□□ 0.72
CHD3-211ENST00000481999 SALL2Q9Y467 1007 aaPredicted RBP19.53■□□□□ 0.72
CHD3-211ENST00000481999 AGLP35573 1532 aa19.51■□□□□ 0.71
CHD3-211ENST00000481999 KNSTRNQ9Y448 316 aa19.51■□□□□ 0.71
CHD3-211ENST00000481999 ZBED9Q6R2W3 1325 aa19.51■□□□□ 0.71
CHD3-211ENST00000481999 AMER1Q5JTC6 1135 aaPredicted RBP19.5■□□□□ 0.71
CHD3-211ENST00000481999 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
CHD3-211ENST00000481999 NLRP13Q86W25 1043 aa19.5■□□□□ 0.71
CHD3-211ENST00000481999 BRD4O60885 1362 aaPredicted RBP19.5■□□□□ 0.71
CHD3-211ENST00000481999 SETBP1Q9Y6X0 1596 aa19.49■□□□□ 0.71
CHD3-211ENST00000481999 CARD14Q9BXL6 1004 aa19.49■□□□□ 0.71
CHD3-211ENST00000481999 KDM5AP29375 1690 aaKnown RBP19.49■□□□□ 0.71
CHD3-211ENST00000481999 CDCA8Q53HL2 280 aa19.48■□□□□ 0.71
CHD3-211ENST00000481999 SLC12A5Q9H2X9 1139 aa19.48■□□□□ 0.71
CHD3-211ENST00000481999 ASXL1Q8IXJ9 1541 aa19.47■□□□□ 0.71
CHD3-211ENST00000481999 QRICH2Q9H0J4 1663 aa19.47■□□□□ 0.71
CHD3-211ENST00000481999 ZMYM3Q14202 1370 aa19.45■□□□□ 0.7
CHD3-211ENST00000481999 ESF1Q9H501 851 aaKnown RBP19.45■□□□□ 0.7
CHD3-211ENST00000481999 LRPPRCP42704 1394 aaKnown RBP19.45■□□□□ 0.7
CHD3-211ENST00000481999 MYO3AQ8NEV4 1616 aa19.45■□□□□ 0.7
CHD3-211ENST00000481999 ERICH6BQ5W0A0 696 aa19.45■□□□□ 0.7
CHD3-211ENST00000481999 CEBPAP49715 358 aaPredicted RBP19.44■□□□□ 0.7
CHD3-211ENST00000481999 CABP2Q9NPB3 220 aa19.43■□□□□ 0.7
CHD3-211ENST00000481999 ARHGEF28Q8N1W1 1705 aaKnown RBP19.42■□□□□ 0.7
CHD3-211ENST00000481999 PPP2R1AP30153 589 aa19.42■□□□□ 0.7
CHD3-211ENST00000481999 A2ML1A8K2U0 1454 aa19.41■□□□□ 0.7
CHD3-211ENST00000481999 SPATA31D1Q6ZQQ2 1576 aa19.41■□□□□ 0.7
CHD3-211ENST00000481999 SBNO2Q9Y2G9 1366 aa19.4■□□□□ 0.7
CHD3-211ENST00000481999 MINK1Q8N4C8 1332 aaPredicted RBP19.4■□□□□ 0.7
CHD3-211ENST00000481999 PRAM1Q96QH2 718 aa19.4■□□□□ 0.7
CHD3-211ENST00000481999 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
CHD3-211ENST00000481999 TNNT2P45379 298 aaPredicted RBP19.39■□□□□ 0.69
CHD3-211ENST00000481999 TULP4Q9NRJ4 1543 aa19.39■□□□□ 0.69
CHD3-211ENST00000481999 ZFYVE9O95405 1425 aa19.38■□□□□ 0.69
CHD3-211ENST00000481999 KDM4FA0A1W2PPD8 638 aa19.38■□□□□ 0.69
CHD3-211ENST00000481999 ADAMTSL3P82987 1691 aa19.37■□□□□ 0.69
CHD3-211ENST00000481999 ADAMTS8Q9UP79 889 aa19.36■□□□□ 0.69
CHD3-211ENST00000481999 RIMS2Q9UQ26 1411 aa19.36■□□□□ 0.69
CHD3-211ENST00000481999 ALKQ9UM73 1620 aa19.36■□□□□ 0.69
CHD3-211ENST00000481999 RBM19Q9Y4C8 960 aaKnown RBP19.35■□□□□ 0.69
CHD3-211ENST00000481999 NSD3Q9BZ95 1437 aa19.35■□□□□ 0.69
CHD3-211ENST00000481999 YTHDC2Q9H6S0 1430 aaKnown RBP19.35■□□□□ 0.69
CHD3-211ENST00000481999 WAPLQ7Z5K2 1190 aa19.35■□□□□ 0.69
CHD3-211ENST00000481999 PTPRMP28827 1452 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms