RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 MAP3K7O43318 606 aa12.12□□□□□ -0.47
VPS50-215ENST00000480943 EN1Q05925 392 aaPredicted RBP12.12□□□□□ -0.47
VPS50-215ENST00000480943 TATDN2Q93075 761 aa12.12□□□□□ -0.47
VPS50-215ENST00000480943 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 PRSS12P56730 875 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 ANKLE1Q8NAG6 615 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 PRR14Q9BWN1 585 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 PNMA3Q9UL41 463 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 CC2D2AQ9P2K1 1620 aa12.11□□□□□ -0.47
VPS50-215ENST00000480943 GDF9O60383 454 aa12.09□□□□□ -0.47
VPS50-215ENST00000480943 EIF4G1Q04637 1599 aaKnown RBP12.09□□□□□ -0.47
VPS50-215ENST00000480943 C11orf95C9JLR9 678 aaPredicted RBP12.08□□□□□ -0.48
VPS50-215ENST00000480943 TNFRSF10AO00220 468 aa12.08□□□□□ -0.48
VPS50-215ENST00000480943 NFX1Q12986 1120 aaKnown RBP12.08□□□□□ -0.48
VPS50-215ENST00000480943 SLF2Q8IX21 1173 aa12.08□□□□□ -0.48
VPS50-215ENST00000480943 CRIPAKQ8N1N5 446 aa12.08□□□□□ -0.48
VPS50-215ENST00000480943 DDX12PQ92771 950 aa12.07□□□□□ -0.48
VPS50-215ENST00000480943 SPRYD3Q8NCJ5 442 aa12.06□□□□□ -0.48
VPS50-215ENST00000480943 EMID1Q96A84 441 aaPredicted RBP12.06□□□□□ -0.48
VPS50-215ENST00000480943 NBR1Q14596 966 aa12.05□□□□□ -0.48
VPS50-215ENST00000480943 TSR1Q2NL82 804 aaKnown RBP12.05□□□□□ -0.48
VPS50-215ENST00000480943 LMOD2Q6P5Q4 547 aa12.05□□□□□ -0.48
VPS50-215ENST00000480943 DPYSL4O14531 572 aa12.02□□□□□ -0.49
VPS50-215ENST00000480943 PAXIP1Q6ZW49 1069 aaPredicted RBP12.02□□□□□ -0.49
VPS50-215ENST00000480943 PCDHB3Q9Y5E6 796 aa12.02□□□□□ -0.49
VPS50-215ENST00000480943 CFAP44Q96MT7 982 aa12.01□□□□□ -0.49
VPS50-215ENST00000480943 LIAT1Q6ZQX7 453 aa12□□□□□ -0.49
VPS50-215ENST00000480943 GMPR2Q9P2T1 348 aaKnown RBP11.99□□□□□ -0.49
VPS50-215ENST00000480943 FAM198AQ9UFP1 575 aa11.99□□□□□ -0.49
VPS50-215ENST00000480943 CECR2Q9BXF3 1484 aa11.98□□□□□ -0.49
VPS50-215ENST00000480943 AXIN1O15169 862 aa11.98□□□□□ -0.49
VPS50-215ENST00000480943 CAMK2BQ13554 666 aa11.98□□□□□ -0.49
VPS50-215ENST00000480943 CTC1Q2NKJ3 1217 aa11.98□□□□□ -0.49
VPS50-215ENST00000480943 NUDT18Q6ZVK8 323 aa11.98□□□□□ -0.49
VPS50-215ENST00000480943 CADPS2Q86UW7 1296 aa11.97□□□□□ -0.49
VPS50-215ENST00000480943 AVPP01185 164 aa11.95□□□□□ -0.5
VPS50-215ENST00000480943 RBM27Q9P2N5 1060 aaKnown RBP11.95□□□□□ -0.5
VPS50-215ENST00000480943 SWT1Q5T5J6 900 aaKnown RBP11.94□□□□□ -0.5
VPS50-215ENST00000480943 C3orf80F5H4A9 247 aa11.92□□□□□ -0.5
VPS50-215ENST00000480943 DACH1Q9UI36 760 aa11.92□□□□□ -0.5
VPS50-215ENST00000480943 TERTO14746 1132 aaKnown RBP11.91□□□□□ -0.5
VPS50-215ENST00000480943 PPEF1O14829 653 aaPredicted RBP11.91□□□□□ -0.5
VPS50-215ENST00000480943 S1PR4O95977 384 aa11.91□□□□□ -0.5
VPS50-215ENST00000480943 BLOC1S3Q6QNY0 202 aa11.91□□□□□ -0.5
VPS50-215ENST00000480943 SMCPP49901 116 aaPredicted RBP11.89□□□□□ -0.51
VPS50-215ENST00000480943 FOXC1Q12948 553 aa11.88□□□□□ -0.51
VPS50-215ENST00000480943 SUZ12Q15022 739 aaKnown RBP11.88□□□□□ -0.51
VPS50-215ENST00000480943 TLL1O43897 1013 aa11.87□□□□□ -0.51
VPS50-215ENST00000480943 PKD2L1Q9P0L9 805 aa11.86□□□□□ -0.51
VPS50-215ENST00000480943 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
VPS50-215ENST00000480943 CYP4X1Q8N118 509 aa11.85□□□□□ -0.51
VPS50-215ENST00000480943 PDIA6Q15084 440 aa11.84□□□□□ -0.51
VPS50-215ENST00000480943 ADH1BP00325 375 aa11.83□□□□□ -0.52
VPS50-215ENST00000480943 SENP2Q9HC62 589 aa11.83□□□□□ -0.52
VPS50-215ENST00000480943 SLC16A10Q8TF71 515 aa11.82□□□□□ -0.52
VPS50-215ENST00000480943 TOR4AQ9NXH8 423 aa11.82□□□□□ -0.52
VPS50-215ENST00000480943 KMT5BQ4FZB7 885 aa11.8□□□□□ -0.52
VPS50-215ENST00000480943 SLC6A16Q9GZN6 736 aa11.8□□□□□ -0.52
VPS50-215ENST00000480943 SMARCA4P51532 1647 aa11.79□□□□□ -0.52
VPS50-215ENST00000480943 ZSCAN1Q8NBB4 408 aa11.79□□□□□ -0.52
VPS50-215ENST00000480943 RPIAP49247 311 aa11.78□□□□□ -0.52
VPS50-215ENST00000480943 LCE2CQ5TA81 110 aa11.77□□□□□ -0.53
VPS50-215ENST00000480943 NR1I2O75469 434 aa11.76□□□□□ -0.53
VPS50-215ENST00000480943 CD2BP2O95400 341 aaKnown RBP11.76□□□□□ -0.53
VPS50-215ENST00000480943 ACTN4O43707 911 aaKnown RBP11.75□□□□□ -0.53
VPS50-215ENST00000480943 PLA2G2CQ5R387 149 aa11.75□□□□□ -0.53
VPS50-215ENST00000480943 KIFC2Q96AC6 838 aa11.75□□□□□ -0.53
VPS50-215ENST00000480943 TRIM47Q96LD4 638 aa11.75□□□□□ -0.53
VPS50-215ENST00000480943 ATP13A2Q9NQ11 1180 aa11.74□□□□□ -0.53
VPS50-215ENST00000480943 TSHZ2Q9NRE2 1034 aa11.74□□□□□ -0.53
VPS50-215ENST00000480943 PLCB2Q00722 1185 aa11.73□□□□□ -0.53
VPS50-215ENST00000480943 TTC13Q8NBP0 860 aa11.73□□□□□ -0.53
VPS50-215ENST00000480943 WDR70Q9NW82 654 aa11.73□□□□□ -0.53
VPS50-215ENST00000480943 BAZ1AQ9NRL2 1556 aaPredicted RBP11.72□□□□□ -0.53
VPS50-215ENST00000480943 SNRPBP14678 240 aaKnown RBP11.72□□□□□ -0.53
VPS50-215ENST00000480943 TTC24A2A3L6 582 aaPredicted RBP11.7□□□□□ -0.54
VPS50-215ENST00000480943 SMARCA2P51531 1590 aa11.7□□□□□ -0.54
VPS50-215ENST00000480943 GRXCR2A6NFK2 248 aa11.69□□□□□ -0.54
VPS50-215ENST00000480943 PADI6Q6TGC4 694 aa11.69□□□□□ -0.54
VPS50-215ENST00000480943 ATAD2BQ9ULI0 1458 aa11.69□□□□□ -0.54
VPS50-215ENST00000480943 CDHR5Q9HBB8 845 aa11.68□□□□□ -0.54
VPS50-215ENST00000480943 HMGXB3Q12766 1538 aa11.67□□□□□ -0.54
VPS50-215ENST00000480943 E2F4Q16254 413 aa11.67□□□□□ -0.54
VPS50-215ENST00000480943 IRF7Q92985 503 aa11.67□□□□□ -0.54
VPS50-215ENST00000480943 EYA1Q99502 592 aa11.67□□□□□ -0.54
VPS50-215ENST00000480943 NCAPD3P42695 1498 aa11.67□□□□□ -0.54
VPS50-215ENST00000480943 PRIM1P49642 420 aaKnown RBP11.66□□□□□ -0.54
VPS50-215ENST00000480943 DNAJB2P25686 324 aa11.64□□□□□ -0.55
VPS50-215ENST00000480943 NPAS3Q8IXF0 933 aa11.64□□□□□ -0.55
VPS50-215ENST00000480943 MROH2BQ7Z745 1585 aa11.63□□□□□ -0.55
VPS50-215ENST00000480943 PEG3Q9GZU2 1588 aa11.63□□□□□ -0.55
VPS50-215ENST00000480943 CFHP08603 1231 aa11.63□□□□□ -0.55
VPS50-215ENST00000480943 GMPRP36959 345 aa11.63□□□□□ -0.55
VPS50-215ENST00000480943 NXF1Q9UBU9 619 aaKnown RBP11.62□□□□□ -0.55
VPS50-215ENST00000480943 BAZ1BQ9UIG0 1483 aaKnown RBP11.61□□□□□ -0.55
VPS50-215ENST00000480943 LORP23490 312 aaPredicted RBP11.6□□□□□ -0.55
VPS50-215ENST00000480943 SPSB2Q99619 263 aa11.6□□□□□ -0.55
VPS50-215ENST00000480943 OSBPP22059 807 aa11.59□□□□□ -0.55
VPS50-215ENST00000480943 SNIP1Q8TAD8 396 aaKnown RBP11.59□□□□□ -0.55
VPS50-215ENST00000480943 SCUBE3Q8IX30 993 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms