RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PLEKHD1A6NEE1 506 aa23.93■■□□□ 1.42
CCDC88B-207ENST00000479965 AMER1Q5JTC6 1135 aaPredicted RBP23.92■■□□□ 1.42
CCDC88B-207ENST00000479965 CEP170Q5SW79 1584 aa23.92■■□□□ 1.42
CCDC88B-207ENST00000479965 BCL2L13Q9BXK5 485 aa23.92■■□□□ 1.42
CCDC88B-207ENST00000479965 MYH16Q9H6N6 1097 aa23.92■■□□□ 1.42
CCDC88B-207ENST00000479965 KDM5DQ9BY66 1539 aa23.92■■□□□ 1.42
CCDC88B-207ENST00000479965 FSD2A1L4K1 749 aa23.91■■□□□ 1.42
CCDC88B-207ENST00000479965 RAPGEF6Q8TEU7 1601 aa23.91■■□□□ 1.42
CCDC88B-207ENST00000479965 TRMT2AQ8IZ69 625 aaKnown RBP23.91■■□□□ 1.42
CCDC88B-207ENST00000479965 PLB1Q6P1J6 1458 aa23.9■■□□□ 1.42
CCDC88B-207ENST00000479965 DISP1Q96F81 1524 aa23.9■■□□□ 1.42
CCDC88B-207ENST00000479965 PDE3AQ14432 1141 aa23.9■■□□□ 1.42
CCDC88B-207ENST00000479965 RRP9O43818 475 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-207ENST00000479965 PDZRN3Q9UPQ7 1066 aa23.9■■□□□ 1.42
CCDC88B-207ENST00000479965 MFAP1P55081 439 aaKnown RBP23.89■■□□□ 1.41
CCDC88B-207ENST00000479965 MAGI2Q86UL8 1455 aa23.88■■□□□ 1.41
CCDC88B-207ENST00000479965 TRPM1Q7Z4N2 1603 aa23.88■■□□□ 1.41
CCDC88B-207ENST00000479965 TNNQ9UQP3 1299 aa23.88■■□□□ 1.41
CCDC88B-207ENST00000479965 GPRASP1Q5JY77 1395 aa23.87■■□□□ 1.41
CCDC88B-207ENST00000479965 PCDHB15Q9Y5E8 787 aa23.87■■□□□ 1.41
CCDC88B-207ENST00000479965 MRE11P49959 708 aa23.87■■□□□ 1.41
CCDC88B-207ENST00000479965 TRIM44Q96DX7 344 aaPredicted RBP23.87■■□□□ 1.41
CCDC88B-207ENST00000479965 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
CCDC88B-207ENST00000479965 PMFBP1Q8TBY8 1022 aa23.86■■□□□ 1.41
CCDC88B-207ENST00000479965 KIAA0556O60303 1618 aa23.86■■□□□ 1.41
CCDC88B-207ENST00000479965 A2MP01023 1474 aa23.86■■□□□ 1.41
CCDC88B-207ENST00000479965 CHMP5Q9NZZ3 219 aa23.85■■□□□ 1.41
CCDC88B-207ENST00000479965 NLRP1Q9C000 1473 aa23.85■■□□□ 1.41
CCDC88B-207ENST00000479965 ESPNB1AK53 854 aa23.85■■□□□ 1.41
CCDC88B-207ENST00000479965 GRPEL1Q9HAV7 217 aa23.85■■□□□ 1.41
CCDC88B-207ENST00000479965 RRP7AQ9Y3A4 280 aaKnown RBP23.85■■□□□ 1.41
CCDC88B-207ENST00000479965 FBLN2P98095 1184 aa23.83■■□□□ 1.4
CCDC88B-207ENST00000479965 CROCC2H7BZ55 1655 aa23.82■■□□□ 1.4
CCDC88B-207ENST00000479965 ADAMTS12P58397 1594 aa23.82■■□□□ 1.4
CCDC88B-207ENST00000479965 C22orf23Q9BZE7 217 aa23.81■■□□□ 1.4
CCDC88B-207ENST00000479965 FAM135AQ9P2D6 1515 aa23.81■■□□□ 1.4
CCDC88B-207ENST00000479965 TARBP1Q13395 1621 aaKnown RBP23.81■■□□□ 1.4
CCDC88B-207ENST00000479965 RLBP1P12271 317 aa23.81■■□□□ 1.4
CCDC88B-207ENST00000479965 ERBB4Q15303 1308 aa23.8■■□□□ 1.4
CCDC88B-207ENST00000479965 PTPRGP23470 1445 aa23.79■■□□□ 1.4
CCDC88B-207ENST00000479965 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
CCDC88B-207ENST00000479965 DNAJC5BQ9UF47 199 aa23.79■■□□□ 1.4
CCDC88B-207ENST00000479965 WDR7Q9Y4E6 1490 aa23.78■■□□□ 1.4
CCDC88B-207ENST00000479965 WWC1Q8IX03 1113 aa23.78■■□□□ 1.4
CCDC88B-207ENST00000479965 PRDM15P57071 1507 aaPredicted RBP23.78■■□□□ 1.4
CCDC88B-207ENST00000479965 TNNT2P45379 298 aaPredicted RBP23.77■■□□□ 1.4
CCDC88B-207ENST00000479965 RWDD1Q9H446 243 aaPredicted RBP23.77■■□□□ 1.4
CCDC88B-207ENST00000479965 EIF4G3O43432 1585 aaKnown RBP23.77■■□□□ 1.4
CCDC88B-207ENST00000479965 HSCBQ8IWL3 235 aa23.77■■□□□ 1.4
CCDC88B-207ENST00000479965 CDCA8Q53HL2 280 aa23.76■■□□□ 1.39
CCDC88B-207ENST00000479965 PLA2R1Q13018 1463 aa23.74■■□□□ 1.39
CCDC88B-207ENST00000479965 RARSP54136 660 aaKnown RBP23.74■■□□□ 1.39
CCDC88B-207ENST00000479965 DDX11L8A8MPP1 907 aa23.74■■□□□ 1.39
CCDC88B-207ENST00000479965 SHANK2Q9UPX8 1470 aa23.72■■□□□ 1.39
CCDC88B-207ENST00000479965 PIK3C2GO75747 1445 aa23.71■■□□□ 1.39
CCDC88B-207ENST00000479965 VIRMAQ69YN4 1812 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-207ENST00000479965 FOXD4L1Q9NU39 408 aa23.71■■□□□ 1.39
CCDC88B-207ENST00000479965 GAS2L3Q86XJ1 694 aa23.69■■□□□ 1.38
CCDC88B-207ENST00000479965 NINLQ9Y2I6 1382 aa23.69■■□□□ 1.38
CCDC88B-207ENST00000479965 ASXL1Q8IXJ9 1541 aa23.69■■□□□ 1.38
CCDC88B-207ENST00000479965 FTSJ3Q8IY81 847 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-207ENST00000479965 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
CCDC88B-207ENST00000479965 CDC42BPAQ5VT25 1732 aa23.68■■□□□ 1.38
CCDC88B-207ENST00000479965 CLASP1Q7Z460 1538 aa23.66■■□□□ 1.38
CCDC88B-207ENST00000479965 HSP90AB1P08238 724 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-207ENST00000479965 TNPO1Q92973 898 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-207ENST00000479965 ADCY10Q96PN6 1610 aa23.65■■□□□ 1.38
CCDC88B-207ENST00000479965 KIAA1211Q6ZU35 1233 aa23.64■■□□□ 1.37
CCDC88B-207ENST00000479965 MAGI1Q96QZ7 1491 aaPredicted RBP23.64■■□□□ 1.37
CCDC88B-207ENST00000479965 TCP11L2Q8N4U5 519 aa23.64■■□□□ 1.37
CCDC88B-207ENST00000479965 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
CCDC88B-207ENST00000479965 JPH4Q96JJ6 628 aa23.62■■□□□ 1.37
CCDC88B-207ENST00000479965 GBP4Q96PP9 640 aa23.61■■□□□ 1.37
CCDC88B-207ENST00000479965 ABCC2Q92887 1545 aa23.61■■□□□ 1.37
CCDC88B-207ENST00000479965 RBM10P98175 930 aaKnown RBP23.6■■□□□ 1.37
CCDC88B-207ENST00000479965 TPM2P07951 284 aa23.6■■□□□ 1.37
CCDC88B-207ENST00000479965 NGEFQ8N5V2 710 aa23.6■■□□□ 1.37
CCDC88B-207ENST00000479965 ABCC10Q5T3U5 1492 aa23.6■■□□□ 1.37
CCDC88B-207ENST00000479965 MVPQ14764 893 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-207ENST00000479965 ZNF692Q9BU19 519 aaPredicted RBP23.59■■□□□ 1.37
CCDC88B-207ENST00000479965 CARD14Q9BXL6 1004 aa23.59■■□□□ 1.37
CCDC88B-207ENST00000479965 EIF2AK4Q9P2K8 1649 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-207ENST00000479965 NUP160Q12769 1436 aa23.58■■□□□ 1.37
CCDC88B-207ENST00000479965 AAMPQ13685 434 aa23.58■■□□□ 1.37
CCDC88B-207ENST00000479965 ISY1Q9ULR0 285 aaKnown RBP23.58■■□□□ 1.37
CCDC88B-207ENST00000479965 ANP32BQ92688 251 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-207ENST00000479965 ITPRIPQ8IWB1 547 aa23.57■■□□□ 1.36
CCDC88B-207ENST00000479965 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
CCDC88B-207ENST00000479965 DZIP1LQ8IYY4 767 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-207ENST00000479965 RUNDC1Q96C34 613 aa23.56■■□□□ 1.36
CCDC88B-207ENST00000479965 PDCL3Q9H2J4 239 aa23.56■■□□□ 1.36
CCDC88B-207ENST00000479965 LAMC1P11047 1609 aa23.56■■□□□ 1.36
CCDC88B-207ENST00000479965 CARMIL2Q6F5E8 1435 aa23.56■■□□□ 1.36
CCDC88B-207ENST00000479965 ZKSCAN2Q63HK3 967 aa23.56■■□□□ 1.36
CCDC88B-207ENST00000479965 MORC1Q86VD1 984 aa23.55■■□□□ 1.36
CCDC88B-207ENST00000479965 ARID3AQ99856 593 aa23.55■■□□□ 1.36
CCDC88B-207ENST00000479965 MSNP26038 577 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-207ENST00000479965 NASPP49321 788 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-207ENST00000479965 ATP10BO94823 1461 aa23.54■■□□□ 1.36
CCDC88B-207ENST00000479965 RTEL1-TNFRSF6BF6WH68 1400 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms