RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 METTL3Q86U44 580 aaKnown RBP12.8□□□□□ -0.36
COMMD3-212ENST00000479958 BCANQ96GW7 911 aa12.8□□□□□ -0.36
COMMD3-212ENST00000479958 MINK1Q8N4C8 1332 aaPredicted RBP12.79□□□□□ -0.36
COMMD3-212ENST00000479958 MAP2K5Q13163 448 aa12.79□□□□□ -0.36
COMMD3-212ENST00000479958 RSPH4AQ5TD94 716 aa12.79□□□□□ -0.36
COMMD3-212ENST00000479958 IRF6O14896 467 aa12.76□□□□□ -0.37
COMMD3-212ENST00000479958 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
COMMD3-212ENST00000479958 PRR14Q9BWN1 585 aa12.75□□□□□ -0.37
COMMD3-212ENST00000479958 DAXXQ9UER7 740 aaPredicted RBP12.73□□□□□ -0.37
COMMD3-212ENST00000479958 ZC3H15Q8WU90 426 aaKnown RBP12.71□□□□□ -0.37
COMMD3-212ENST00000479958 ZMYND10O75800 440 aa12.7□□□□□ -0.38
COMMD3-212ENST00000479958 KCNC4Q03721 635 aa12.7□□□□□ -0.38
COMMD3-212ENST00000479958 IFFO2Q5TF58 517 aa12.7□□□□□ -0.38
COMMD3-212ENST00000479958 BARGINQ6ZT62 677 aa12.7□□□□□ -0.38
COMMD3-212ENST00000479958 KMT5BQ4FZB7 885 aa12.69□□□□□ -0.38
COMMD3-212ENST00000479958 ITGBL1O95965 494 aaPredicted RBP12.68□□□□□ -0.38
COMMD3-212ENST00000479958 SULF1Q8IWU6 871 aa12.68□□□□□ -0.38
COMMD3-212ENST00000479958 APLP1P51693 650 aa12.67□□□□□ -0.38
COMMD3-212ENST00000479958 CCDC102AQ96A19 550 aa12.65□□□□□ -0.38
COMMD3-212ENST00000479958 PHOX2BQ99453 314 aa12.65□□□□□ -0.38
COMMD3-212ENST00000479958 DDX11L8A8MPP1 907 aa12.63□□□□□ -0.39
COMMD3-212ENST00000479958 RDH13Q8NBN7 331 aa12.63□□□□□ -0.39
COMMD3-212ENST00000479958 IL21Q9HBE4 155 aa12.63□□□□□ -0.39
COMMD3-212ENST00000479958 CFHP08603 1231 aa12.62□□□□□ -0.39
COMMD3-212ENST00000479958 SLC10A3P09131 477 aa12.62□□□□□ -0.39
COMMD3-212ENST00000479958 NLRP7Q8WX94 980 aa12.62□□□□□ -0.39
COMMD3-212ENST00000479958 MTRQ99707 1265 aa12.62□□□□□ -0.39
COMMD3-212ENST00000479958 PCDHB3Q9Y5E6 796 aa12.62□□□□□ -0.39
COMMD3-212ENST00000479958 ACTN4O43707 911 aaKnown RBP12.61□□□□□ -0.39
COMMD3-212ENST00000479958 TJAP1Q5JTD0 557 aa12.61□□□□□ -0.39
COMMD3-212ENST00000479958 CLCN1P35523 988 aa12.59□□□□□ -0.39
COMMD3-212ENST00000479958 MDM2Q00987 491 aaPredicted RBP12.59□□□□□ -0.39
COMMD3-212ENST00000479958 COPS2P61201 443 aa12.56□□□□□ -0.4
COMMD3-212ENST00000479958 GPCPD1Q9NPB8 672 aa12.56□□□□□ -0.4
COMMD3-212ENST00000479958 AK7Q96M32 723 aa12.55□□□□□ -0.4
COMMD3-212ENST00000479958 A0A0G2JS52 829 aa12.54□□□□□ -0.4
COMMD3-212ENST00000479958 GCGRP47871 477 aa12.54□□□□□ -0.4
COMMD3-212ENST00000479958 NR1I2O75469 434 aa12.53□□□□□ -0.4
COMMD3-212ENST00000479958 ZNF516Q92618 1163 aa12.53□□□□□ -0.4
COMMD3-212ENST00000479958 ZPR1O75312 459 aa12.52□□□□□ -0.41
COMMD3-212ENST00000479958 GRIPAP1Q4V328 841 aa12.52□□□□□ -0.41
COMMD3-212ENST00000479958 BLOC1S3Q6QNY0 202 aa12.52□□□□□ -0.41
COMMD3-212ENST00000479958 TTLL12Q14166 644 aaPredicted RBP12.5□□□□□ -0.41
COMMD3-212ENST00000479958 RGS20O76081 388 aa12.49□□□□□ -0.41
COMMD3-212ENST00000479958 CD46P15529 392 aa12.49□□□□□ -0.41
COMMD3-212ENST00000479958 ATP6V1AP38606 617 aa12.49□□□□□ -0.41
COMMD3-212ENST00000479958 AMHR2Q16671 573 aa12.48□□□□□ -0.41
COMMD3-212ENST00000479958 TRIM66O15016 1216 aa12.47□□□□□ -0.41
COMMD3-212ENST00000479958 GGCXP38435 758 aa12.47□□□□□ -0.41
COMMD3-212ENST00000479958 FAM217BQ9NTX9 383 aaPredicted RBP12.47□□□□□ -0.41
COMMD3-212ENST00000479958 FUT2Q10981 343 aa12.46□□□□□ -0.41
COMMD3-212ENST00000479958 SCUBE3Q8IX30 993 aa12.46□□□□□ -0.41
COMMD3-212ENST00000479958 TMUB1Q9BVT8 246 aa12.46□□□□□ -0.41
COMMD3-212ENST00000479958 PUS10Q3MIT2 529 aaKnown RBP12.45□□□□□ -0.42
COMMD3-212ENST00000479958 SLC24A3Q9HC58 644 aa12.45□□□□□ -0.42
COMMD3-212ENST00000479958 SSTR3P32745 418 aaPredicted RBP12.45□□□□□ -0.42
COMMD3-212ENST00000479958 KDM4AO75164 1064 aa12.44□□□□□ -0.42
COMMD3-212ENST00000479958 NKX2-3Q8TAU0 364 aa12.44□□□□□ -0.42
COMMD3-212ENST00000479958 USP46P62068 366 aa12.43□□□□□ -0.42
COMMD3-212ENST00000479958 MORN1Q5T089 497 aa12.42□□□□□ -0.42
COMMD3-212ENST00000479958 NUTM1Q86Y26 1132 aa12.42□□□□□ -0.42
COMMD3-212ENST00000479958 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.42□□□□□ -0.42
COMMD3-212ENST00000479958 PPP1R18Q6NYC8 613 aa12.41□□□□□ -0.42
COMMD3-212ENST00000479958 REPIN1Q9BWE0 567 aaKnown RBP12.41□□□□□ -0.42
COMMD3-212ENST00000479958 GIGYF2Q6Y7W6 1299 aaKnown RBP12.39□□□□□ -0.43
COMMD3-212ENST00000479958 FMNL1O95466 1100 aaPredicted RBP12.37□□□□□ -0.43
COMMD3-212ENST00000479958 ADH1BP00325 375 aa12.37□□□□□ -0.43
COMMD3-212ENST00000479958 PDE4DQ08499 809 aa12.37□□□□□ -0.43
COMMD3-212ENST00000479958 SPSB2Q99619 263 aa12.37□□□□□ -0.43
COMMD3-212ENST00000479958 SLC27A5Q9Y2P5 690 aa12.37□□□□□ -0.43
COMMD3-212ENST00000479958 SALL2Q9Y467 1007 aaPredicted RBP12.37□□□□□ -0.43
COMMD3-212ENST00000479958 Q3C1V9 767 aa12.37□□□□□ -0.43
COMMD3-212ENST00000479958 PARP9Q8IXQ6 854 aa12.36□□□□□ -0.43
COMMD3-212ENST00000479958 TLL1O43897 1013 aa12.35□□□□□ -0.43
COMMD3-212ENST00000479958 SLC6A16Q9GZN6 736 aa12.35□□□□□ -0.43
COMMD3-212ENST00000479958 DIXDC1Q155Q3 683 aa12.34□□□□□ -0.43
COMMD3-212ENST00000479958 BEGAINQ9BUH8 593 aa12.33□□□□□ -0.44
COMMD3-212ENST00000479958 HOXA2O43364 376 aa12.31□□□□□ -0.44
COMMD3-212ENST00000479958 BRICD5Q6PL45 260 aa12.31□□□□□ -0.44
COMMD3-212ENST00000479958 THAP11Q96EK4 314 aa12.3□□□□□ -0.44
COMMD3-212ENST00000479958 S1PR4O95977 384 aa12.29□□□□□ -0.44
COMMD3-212ENST00000479958 SPIRE2Q8WWL2 714 aa12.29□□□□□ -0.44
COMMD3-212ENST00000479958 RNF223E7ERA6 249 aa12.28□□□□□ -0.44
COMMD3-212ENST00000479958 ANKLE1Q8NAG6 615 aa12.28□□□□□ -0.44
COMMD3-212ENST00000479958 PRKD2Q9BZL6 878 aa12.27□□□□□ -0.45
COMMD3-212ENST00000479958 FDX1P10109 184 aa12.26□□□□□ -0.45
COMMD3-212ENST00000479958 MS4A1P11836 297 aa12.26□□□□□ -0.45
COMMD3-212ENST00000479958 V9GY48 417 aaPredicted RBP12.26□□□□□ -0.45
COMMD3-212ENST00000479958 RNF19BQ6ZMZ0 732 aa12.25□□□□□ -0.45
COMMD3-212ENST00000479958 USB1Q9BQ65 265 aaKnown RBP12.25□□□□□ -0.45
COMMD3-212ENST00000479958 PPEF1O14829 653 aaPredicted RBP12.23□□□□□ -0.45
COMMD3-212ENST00000479958 MSS51Q4VC12 460 aa12.23□□□□□ -0.45
COMMD3-212ENST00000479958 FAM160A2Q8N612 972 aaPredicted RBP12.23□□□□□ -0.45
COMMD3-212ENST00000479958 HLA-CQ95604 372 aa12.23□□□□□ -0.45
COMMD3-212ENST00000479958 TBC1D2Q9BYX2 928 aa12.23□□□□□ -0.45
COMMD3-212ENST00000479958 MOXD2PA6NHM9 499 aa12.2□□□□□ -0.46
COMMD3-212ENST00000479958 GJA5P36382 358 aa12.2□□□□□ -0.46
COMMD3-212ENST00000479958 SLC19A1P41440 591 aa12.2□□□□□ -0.46
COMMD3-212ENST00000479958 GUCA2AQ02747 115 aa12.2□□□□□ -0.46
COMMD3-212ENST00000479958 NDUFV2P19404 249 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms