RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 AEBP2Q6ZN18 517 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-212ENST00000477970 BRD4O60885 1362 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-212ENST00000477970 C3P01024 1663 aa16.69■□□□□ 0.26
PTPRF-212ENST00000477970 ZC3H13Q5T200 1668 aaKnown RBP16.69■□□□□ 0.26
PTPRF-212ENST00000477970 TESK2Q96S53 571 aa16.68■□□□□ 0.26
PTPRF-212ENST00000477970 PARD3Q8TEW0 1356 aa16.66■□□□□ 0.26
PTPRF-212ENST00000477970 NBPF1Q3BBV0 1214 aa16.66■□□□□ 0.26
PTPRF-212ENST00000477970 INSRP06213 1382 aa16.66■□□□□ 0.26
PTPRF-212ENST00000477970 LRPPRCP42704 1394 aaKnown RBP16.66■□□□□ 0.26
PTPRF-212ENST00000477970 RGL3Q3MIN7 710 aa16.66■□□□□ 0.26
PTPRF-212ENST00000477970 MYBBP1AQ9BQG0 1328 aaKnown RBP16.65■□□□□ 0.26
PTPRF-212ENST00000477970 CLTCQ00610 1675 aaKnown RBP16.65■□□□□ 0.26
PTPRF-212ENST00000477970 PREX1Q8TCU6 1659 aa16.65■□□□□ 0.26
PTPRF-212ENST00000477970 PPP6R1Q9UPN7 881 aa16.65■□□□□ 0.26
PTPRF-212ENST00000477970 SCAF11Q99590 1463 aaKnown RBP16.65■□□□□ 0.26
PTPRF-212ENST00000477970 NRXN1Q9ULB1 1477 aa16.65■□□□□ 0.26
PTPRF-212ENST00000477970 SYNMO15061 1565 aa16.63■□□□□ 0.25
PTPRF-212ENST00000477970 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
PTPRF-212ENST00000477970 ADGRB3O60242 1522 aa16.63■□□□□ 0.25
PTPRF-212ENST00000477970 FAM9BQ8IZU0 186 aa16.63■□□□□ 0.25
PTPRF-212ENST00000477970 MYO3AQ8NEV4 1616 aa16.62■□□□□ 0.25
PTPRF-212ENST00000477970 DISP3Q9P2K9 1392 aa16.62■□□□□ 0.25
PTPRF-212ENST00000477970 PNISRQ8TF01 805 aaKnown RBP16.62■□□□□ 0.25
PTPRF-212ENST00000477970 PER1O15534 1290 aaPredicted RBP16.61■□□□□ 0.25
PTPRF-212ENST00000477970 KIF3BO15066 747 aa16.6■□□□□ 0.25
PTPRF-212ENST00000477970 TMF1P82094 1093 aa16.6■□□□□ 0.25
PTPRF-212ENST00000477970 SETD1BQ9UPS6 1966 aaKnown RBP16.6■□□□□ 0.25
PTPRF-212ENST00000477970 SETBP1Q9Y6X0 1596 aa16.6■□□□□ 0.25
PTPRF-212ENST00000477970 MYT1LQ9UL68 1186 aa16.6■□□□□ 0.25
PTPRF-212ENST00000477970 MYOM1P52179 1685 aa16.58■□□□□ 0.24
PTPRF-212ENST00000477970 ZNF142P52746 1687 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-212ENST00000477970 POLR3GLQ9BT43 218 aa16.58■□□□□ 0.24
PTPRF-212ENST00000477970 EIF3AQ14152 1382 aaKnown RBP16.58■□□□□ 0.24
PTPRF-212ENST00000477970 NPATQ14207 1427 aa16.57■□□□□ 0.24
PTPRF-212ENST00000477970 PPLO60437 1756 aa16.57■□□□□ 0.24
PTPRF-212ENST00000477970 CAMSAP1Q5T5Y3 1602 aa16.57■□□□□ 0.24
PTPRF-212ENST00000477970 SLC24A1O60721 1099 aa16.57■□□□□ 0.24
PTPRF-212ENST00000477970 ABCC3O15438 1527 aa16.57■□□□□ 0.24
PTPRF-212ENST00000477970 PIK3C2BO00750 1634 aa16.56■□□□□ 0.24
PTPRF-212ENST00000477970 KDM5AP29375 1690 aaKnown RBP16.56■□□□□ 0.24
PTPRF-212ENST00000477970 NLRP13Q86W25 1043 aa16.55■□□□□ 0.24
PTPRF-212ENST00000477970 UGGT1Q9NYU2 1555 aa16.55■□□□□ 0.24
PTPRF-212ENST00000477970 TMC1Q8TDI8 760 aa16.55■□□□□ 0.24
PTPRF-212ENST00000477970 CDCA8Q53HL2 280 aa16.54■□□□□ 0.24
PTPRF-212ENST00000477970 LMTK3Q96Q04 1460 aa16.54■□□□□ 0.24
PTPRF-212ENST00000477970 TSHZ2Q9NRE2 1034 aa16.53■□□□□ 0.24
PTPRF-212ENST00000477970 RNF123Q5XPI4 1314 aa16.52■□□□□ 0.24
PTPRF-212ENST00000477970 ARHGAP31Q2M1Z3 1444 aa16.52■□□□□ 0.24
PTPRF-212ENST00000477970 NPC1L1Q9UHC9 1359 aa16.52■□□□□ 0.24
PTPRF-212ENST00000477970 SBNO2Q9Y2G9 1366 aa16.52■□□□□ 0.24
PTPRF-212ENST00000477970 NOS1P29475 1434 aa16.51■□□□□ 0.23
PTPRF-212ENST00000477970 NUDCQ9Y266 331 aa16.5■□□□□ 0.23
PTPRF-212ENST00000477970 MLECQ14165 292 aa16.5■□□□□ 0.23
PTPRF-212ENST00000477970 BCANQ96GW7 911 aa16.5■□□□□ 0.23
PTPRF-212ENST00000477970 BLMP54132 1417 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-212ENST00000477970 ZMYM3Q14202 1370 aa16.48■□□□□ 0.23
PTPRF-212ENST00000477970 RPGRIP1LQ68CZ1 1315 aa16.48■□□□□ 0.23
PTPRF-212ENST00000477970 PIK3C2GO75747 1445 aa16.48■□□□□ 0.23
PTPRF-212ENST00000477970 SPATA31D1Q6ZQQ2 1576 aa16.47■□□□□ 0.23
PTPRF-212ENST00000477970 PANK3Q9H999 370 aa16.47■□□□□ 0.23
PTPRF-212ENST00000477970 ASXL1Q8IXJ9 1541 aa16.47■□□□□ 0.23
PTPRF-212ENST00000477970 PPP4R2Q9NY27 417 aa16.47■□□□□ 0.23
PTPRF-212ENST00000477970 ERVK-7P63135 1459 aa16.46■□□□□ 0.23
PTPRF-212ENST00000477970 ADGRB1O14514 1584 aa16.46■□□□□ 0.22
PTPRF-212ENST00000477970 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
PTPRF-212ENST00000477970 PDE3BQ13370 1112 aa16.44■□□□□ 0.22
PTPRF-212ENST00000477970 ADGRF5Q8IZF2 1346 aa16.43■□□□□ 0.22
PTPRF-212ENST00000477970 CEP170BQ9Y4F5 1589 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-212ENST00000477970 NEXMIFQ5QGS0 1516 aa16.42■□□□□ 0.22
PTPRF-212ENST00000477970 GGT6Q6P531 493 aa16.42■□□□□ 0.22
PTPRF-212ENST00000477970 QRICH2Q9H0J4 1663 aa16.42■□□□□ 0.22
PTPRF-212ENST00000477970 STRCQ7RTU9 1775 aa16.41■□□□□ 0.22
PTPRF-212ENST00000477970 ZFYVE9O95405 1425 aa16.41■□□□□ 0.22
PTPRF-212ENST00000477970 USP32Q8NFA0 1604 aa16.41■□□□□ 0.22
PTPRF-212ENST00000477970 AMER1Q5JTC6 1135 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-212ENST00000477970 NLRP1Q9C000 1473 aa16.39■□□□□ 0.21
PTPRF-212ENST00000477970 CFAP70Q5T0N1 1121 aa16.39■□□□□ 0.21
PTPRF-212ENST00000477970 A2ML1A8K2U0 1454 aa16.38■□□□□ 0.21
PTPRF-212ENST00000477970 C14orf93Q9H972 538 aaKnown RBP16.38■□□□□ 0.21
PTPRF-212ENST00000477970 KNSTRNQ9Y448 316 aa16.38■□□□□ 0.21
PTPRF-212ENST00000477970 CEBPAP49715 358 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-212ENST00000477970 ARHGEF28Q8N1W1 1705 aaKnown RBP16.37■□□□□ 0.21
PTPRF-212ENST00000477970 CC2D1BQ5T0F9 858 aaKnown RBP16.35■□□□□ 0.21
PTPRF-212ENST00000477970 PUS7Q96PZ0 661 aaKnown RBP16.35■□□□□ 0.21
PTPRF-212ENST00000477970 TMEM131LA2VDJ0 1609 aa16.35■□□□□ 0.21
PTPRF-212ENST00000477970 UBR1Q8IWV7 1749 aa16.35■□□□□ 0.21
PTPRF-212ENST00000477970 CNGB1Q14028 1251 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-212ENST00000477970 TNRQ92752 1358 aa16.34■□□□□ 0.21
PTPRF-212ENST00000477970 PPP2R1AP30153 589 aa16.33■□□□□ 0.2
PTPRF-212ENST00000477970 CFAP65Q6ZU64 1925 aaKnown RBP16.33■□□□□ 0.2
PTPRF-212ENST00000477970 IRX6P78412 446 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-212ENST00000477970 CENPJQ9HC77 1338 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-212ENST00000477970 SLC52A1Q9NWF4 448 aa16.31■□□□□ 0.2
PTPRF-212ENST00000477970 MYO5BQ9ULV0 1848 aa16.29■□□□□ 0.2
PTPRF-212ENST00000477970 VGFO15240 615 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-212ENST00000477970 RBM19Q9Y4C8 960 aaKnown RBP16.26■□□□□ 0.19
PTPRF-212ENST00000477970 SLIT1O75093 1534 aa16.25■□□□□ 0.19
PTPRF-212ENST00000477970 TULP4Q9NRJ4 1543 aa16.25■□□□□ 0.19
PTPRF-212ENST00000477970 RRP1P56182 461 aaKnown RBP16.25■□□□□ 0.19
PTPRF-212ENST00000477970 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms