RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 EXOC6Q8TAG9 804 aa23.98■■□□□ 1.43
CCM2-209ENST00000477605 SENP3-EIF4A1A0A087X0R7 540 aa23.98■■□□□ 1.43
CCM2-209ENST00000477605 SCAF11Q99590 1463 aaKnown RBP23.97■■□□□ 1.43
CCM2-209ENST00000477605 IQGAP1P46940 1657 aa23.96■■□□□ 1.43
CCM2-209ENST00000477605 NEURL4Q96JN8 1562 aa23.96■■□□□ 1.43
CCM2-209ENST00000477605 SLC24A1O60721 1099 aa23.96■■□□□ 1.43
CCM2-209ENST00000477605 IPO9Q96P70 1041 aaKnown RBP23.96■■□□□ 1.43
CCM2-209ENST00000477605 MS4A1P11836 297 aa23.95■■□□□ 1.42
CCM2-209ENST00000477605 ZFYVE16Q7Z3T8 1539 aa23.94■■□□□ 1.42
CCM2-209ENST00000477605 KNSTRNQ9Y448 316 aa23.94■■□□□ 1.42
CCM2-209ENST00000477605 NPC1L1Q9UHC9 1359 aa23.94■■□□□ 1.42
CCM2-209ENST00000477605 DEPDC5O75140 1603 aa23.93■■□□□ 1.42
CCM2-209ENST00000477605 FANCAO15360 1455 aa23.92■■□□□ 1.42
CCM2-209ENST00000477605 KDM4FA0A1W2PPD8 638 aa23.92■■□□□ 1.42
CCM2-209ENST00000477605 SYNMO15061 1565 aa23.92■■□□□ 1.42
CCM2-209ENST00000477605 SPHKAPQ2M3C7 1700 aa23.92■■□□□ 1.42
CCM2-209ENST00000477605 RAPGEF3O95398 923 aa23.91■■□□□ 1.42
CCM2-209ENST00000477605 CDCA7LQ96GN5 454 aa23.91■■□□□ 1.42
CCM2-209ENST00000477605 SALL2Q9Y467 1007 aaPredicted RBP23.91■■□□□ 1.42
CCM2-209ENST00000477605 KANK1Q14678 1352 aa23.91■■□□□ 1.42
CCM2-209ENST00000477605 EIF3AQ14152 1382 aaKnown RBP23.91■■□□□ 1.42
CCM2-209ENST00000477605 CEP152O94986 1710 aa23.91■■□□□ 1.42
CCM2-209ENST00000477605 TET3O43151 1660 aa23.9■■□□□ 1.42
CCM2-209ENST00000477605 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.42
CCM2-209ENST00000477605 PPP2R1AP30153 589 aa23.88■■□□□ 1.41
CCM2-209ENST00000477605 AMER1Q5JTC6 1135 aaPredicted RBP23.88■■□□□ 1.41
CCM2-209ENST00000477605 CFAP74Q9C0B2 1584 aa23.88■■□□□ 1.41
CCM2-209ENST00000477605 PIK3C2GO75747 1445 aa23.87■■□□□ 1.41
CCM2-209ENST00000477605 KIAA1210Q9ULL0 1709 aa23.87■■□□□ 1.41
CCM2-209ENST00000477605 FRMPD1Q5SYB0 1578 aa23.86■■□□□ 1.41
CCM2-209ENST00000477605 ADAMTS8Q9UP79 889 aa23.86■■□□□ 1.41
CCM2-209ENST00000477605 ASXL1Q8IXJ9 1541 aa23.86■■□□□ 1.41
CCM2-209ENST00000477605 CLTCL1P53675 1640 aa23.86■■□□□ 1.41
CCM2-209ENST00000477605 AFAP1Q8N556 730 aa23.85■■□□□ 1.41
CCM2-209ENST00000477605 WDR43Q15061 677 aaKnown RBP eCLIP23.85■■□□□ 1.41
CCM2-209ENST00000477605 ZBTB47Q9UFB7 747 aaPredicted RBP23.85■■□□□ 1.41
CCM2-209ENST00000477605 INO80Q9ULG1 1556 aaPredicted RBP23.83■■□□□ 1.41
CCM2-209ENST00000477605 ATP7AQ04656 1500 aa23.83■■□□□ 1.4
CCM2-209ENST00000477605 PAK3O75914 559 aaPredicted RBP23.82■■□□□ 1.4
CCM2-209ENST00000477605 ADGRL1O94910 1474 aa23.82■■□□□ 1.4
CCM2-209ENST00000477605 MYOM2P54296 1465 aa23.81■■□□□ 1.4
CCM2-209ENST00000477605 BCL11AQ9H165 835 aa23.81■■□□□ 1.4
CCM2-209ENST00000477605 ZNF521Q96K83 1311 aa23.8■■□□□ 1.4
CCM2-209ENST00000477605 RICTORQ6R327 1708 aa23.8■■□□□ 1.4
CCM2-209ENST00000477605 PDE4AP27815 886 aa23.8■■□□□ 1.4
CCM2-209ENST00000477605 BACH2Q9BYV9 841 aa23.79■■□□□ 1.4
CCM2-209ENST00000477605 NGEFQ8N5V2 710 aa23.77■■□□□ 1.4
CCM2-209ENST00000477605 CRBNQ96SW2 442 aa23.77■■□□□ 1.4
CCM2-209ENST00000477605 GOLGA2Q08379 1002 aa23.76■■□□□ 1.39
CCM2-209ENST00000477605 DUSP27Q5VZP5 1158 aa23.76■■□□□ 1.39
CCM2-209ENST00000477605 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.75■■□□□ 1.39
CCM2-209ENST00000477605 PLEKHH1Q9ULM0 1364 aa23.75■■□□□ 1.39
CCM2-209ENST00000477605 PLIN1O60240 522 aa23.74■■□□□ 1.39
CCM2-209ENST00000477605 KIF3BO15066 747 aa23.73■■□□□ 1.39
CCM2-209ENST00000477605 KDM5AP29375 1690 aaKnown RBP23.73■■□□□ 1.39
CCM2-209ENST00000477605 MYOM1P52179 1685 aa23.73■■□□□ 1.39
CCM2-209ENST00000477605 POGZQ7Z3K3 1410 aa23.72■■□□□ 1.39
CCM2-209ENST00000477605 SBNO2Q9Y2G9 1366 aa23.71■■□□□ 1.39
CCM2-209ENST00000477605 TRMT2AQ8IZ69 625 aaKnown RBP23.71■■□□□ 1.39
CCM2-209ENST00000477605 LMTK2Q8IWU2 1503 aa23.7■■□□□ 1.39
CCM2-209ENST00000477605 SLFN5Q08AF3 891 aa23.7■■□□□ 1.38
CCM2-209ENST00000477605 MROH1Q8NDA8 1641 aa23.7■■□□□ 1.38
CCM2-209ENST00000477605 NRXN1Q9ULB1 1477 aa23.69■■□□□ 1.38
CCM2-209ENST00000477605 ARHGEF40Q8TER5 1519 aa23.69■■□□□ 1.38
CCM2-209ENST00000477605 CENPQQ7L2Z9 268 aaPredicted RBP23.68■■□□□ 1.38
CCM2-209ENST00000477605 KDM2BQ8NHM5 1336 aa23.68■■□□□ 1.38
CCM2-209ENST00000477605 ERVK-7P63135 1459 aa23.68■■□□□ 1.38
CCM2-209ENST00000477605 EFCAB6Q5THR3 1501 aa23.68■■□□□ 1.38
CCM2-209ENST00000477605 DEKP35659 375 aaKnown RBP23.67■■□□□ 1.38
CCM2-209ENST00000477605 YEATS2Q9ULM3 1422 aa23.66■■□□□ 1.38
CCM2-209ENST00000477605 CFAP70Q5T0N1 1121 aa23.65■■□□□ 1.38
CCM2-209ENST00000477605 ABCA6Q8N139 1617 aa23.65■■□□□ 1.38
CCM2-209ENST00000477605 MYO3AQ8NEV4 1616 aa23.64■■□□□ 1.37
CCM2-209ENST00000477605 ZNF518AQ6AHZ1 1483 aa23.63■■□□□ 1.37
CCM2-209ENST00000477605 ADGRF5Q8IZF2 1346 aa23.63■■□□□ 1.37
CCM2-209ENST00000477605 RTL5Q5HYW3 569 aaPredicted RBP23.63■■□□□ 1.37
CCM2-209ENST00000477605 NBR1Q14596 966 aa23.62■■□□□ 1.37
CCM2-209ENST00000477605 C20orf194Q5TEA3 1177 aa23.62■■□□□ 1.37
CCM2-209ENST00000477605 DDRGK1Q96HY6 314 aa23.62■■□□□ 1.37
CCM2-209ENST00000477605 SETBP1Q9Y6X0 1596 aa23.62■■□□□ 1.37
CCM2-209ENST00000477605 KIF1BO60333 1816 aa23.61■■□□□ 1.37
CCM2-209ENST00000477605 IFT172Q9UG01 1749 aa23.61■■□□□ 1.37
CCM2-209ENST00000477605 E9PSI1 815 aa23.61■■□□□ 1.37
CCM2-209ENST00000477605 NKTRP30414 1462 aaKnown RBP23.6■■□□□ 1.37
CCM2-209ENST00000477605 POLR3AO14802 1390 aaPredicted RBP23.59■■□□□ 1.37
CCM2-209ENST00000477605 NPM2Q86SE8 214 aaKnown RBP23.59■■□□□ 1.37
CCM2-209ENST00000477605 CARD14Q9BXL6 1004 aa23.58■■□□□ 1.36
CCM2-209ENST00000477605 USP35Q9P2H5 1018 aa23.58■■□□□ 1.36
CCM2-209ENST00000477605 ADGRB3O60242 1522 aa23.57■■□□□ 1.36
CCM2-209ENST00000477605 ADAMTSL3P82987 1691 aa23.57■■□□□ 1.36
CCM2-209ENST00000477605 UGGT1Q9NYU2 1555 aa23.56■■□□□ 1.36
CCM2-209ENST00000477605 APAF1O14727 1248 aa23.56■■□□□ 1.36
CCM2-209ENST00000477605 SIGLEC1Q9BZZ2 1709 aa23.56■■□□□ 1.36
CCM2-209ENST00000477605 KIDINS220Q9ULH0 1771 aa23.55■■□□□ 1.36
CCM2-209ENST00000477605 CENPJQ9HC77 1338 aaPredicted RBP23.55■■□□□ 1.36
CCM2-209ENST00000477605 RPGRIP1LQ68CZ1 1315 aa23.54■■□□□ 1.36
CCM2-209ENST00000477605 NINLQ9Y2I6 1382 aa23.54■■□□□ 1.36
CCM2-209ENST00000477605 PPM1GO15355 546 aaPredicted RBP23.54■■□□□ 1.36
CCM2-209ENST00000477605 HECW2Q9P2P5 1572 aa23.53■■□□□ 1.36
CCM2-209ENST00000477605 CCDC146Q8IYE0 955 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms