RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 ITGBL1O95965 494 aaPredicted RBP11.67□□□□□ -0.54
VPS50-213ENST00000477572 KCNC4Q03721 635 aa11.67□□□□□ -0.54
VPS50-213ENST00000477572 PHOX2BQ99453 314 aa11.66□□□□□ -0.54
VPS50-213ENST00000477572 LMOD2Q6P5Q4 547 aa11.65□□□□□ -0.54
VPS50-213ENST00000477572 MTRQ99707 1265 aa11.65□□□□□ -0.54
VPS50-213ENST00000477572 TJAP1Q5JTD0 557 aa11.64□□□□□ -0.55
VPS50-213ENST00000477572 COPS2P61201 443 aa11.63□□□□□ -0.55
VPS50-213ENST00000477572 IFFO2Q5TF58 517 aa11.63□□□□□ -0.55
VPS50-213ENST00000477572 ZNF516Q92618 1163 aa11.63□□□□□ -0.55
VPS50-213ENST00000477572 SLC10A3P09131 477 aa11.62□□□□□ -0.55
VPS50-213ENST00000477572 A0A0G2JS52 829 aa11.61□□□□□ -0.55
VPS50-213ENST00000477572 NECTIN2Q92692 538 aa11.61□□□□□ -0.55
VPS50-213ENST00000477572 CFHP08603 1231 aa11.6□□□□□ -0.55
VPS50-213ENST00000477572 MAP2K5Q13163 448 aa11.59□□□□□ -0.55
VPS50-213ENST00000477572 IL21Q9HBE4 155 aa11.59□□□□□ -0.55
VPS50-213ENST00000477572 DDX11L8A8MPP1 907 aa11.57□□□□□ -0.56
VPS50-213ENST00000477572 IRF6O14896 467 aa11.57□□□□□ -0.56
VPS50-213ENST00000477572 NKX2-3Q8TAU0 364 aa11.57□□□□□ -0.56
VPS50-213ENST00000477572 DAXXQ9UER7 740 aaPredicted RBP11.57□□□□□ -0.56
VPS50-213ENST00000477572 PCDHB3Q9Y5E6 796 aa11.57□□□□□ -0.56
VPS50-213ENST00000477572 RDH13Q8NBN7 331 aa11.56□□□□□ -0.56
VPS50-213ENST00000477572 KMT5BQ4FZB7 885 aa11.55□□□□□ -0.56
VPS50-213ENST00000477572 BLOC1S3Q6QNY0 202 aa11.55□□□□□ -0.56
VPS50-213ENST00000477572 CCDC102AQ96A19 550 aa11.55□□□□□ -0.56
VPS50-213ENST00000477572 SLC24A1O60721 1099 aa11.54□□□□□ -0.56
VPS50-213ENST00000477572 PRR14Q9BWN1 585 aa11.54□□□□□ -0.56
VPS50-213ENST00000477572 MINK1Q8N4C8 1332 aaPredicted RBP11.54□□□□□ -0.56
VPS50-213ENST00000477572 KRI1Q8N9T8 703 aaKnown RBP11.53□□□□□ -0.56
VPS50-213ENST00000477572 ACTN4O43707 911 aaKnown RBP11.52□□□□□ -0.57
VPS50-213ENST00000477572 MDM2Q00987 491 aaPredicted RBP11.52□□□□□ -0.57
VPS50-213ENST00000477572 ZC3H15Q8WU90 426 aaKnown RBP11.52□□□□□ -0.57
VPS50-213ENST00000477572 PUS10Q3MIT2 529 aaKnown RBP11.51□□□□□ -0.57
VPS50-213ENST00000477572 RSPH4AQ5TD94 716 aa11.51□□□□□ -0.57
VPS50-213ENST00000477572 TLL1O43897 1013 aa11.49□□□□□ -0.57
VPS50-213ENST00000477572 ZPR1O75312 459 aa11.49□□□□□ -0.57
VPS50-213ENST00000477572 PPP1R18Q6NYC8 613 aa11.47□□□□□ -0.57
VPS50-213ENST00000477572 ZMYND10O75800 440 aa11.46□□□□□ -0.57
VPS50-213ENST00000477572 BARGINQ6ZT62 677 aa11.46□□□□□ -0.57
VPS50-213ENST00000477572 SULF1Q8IWU6 871 aa11.46□□□□□ -0.57
VPS50-213ENST00000477572 FUT2Q10981 343 aa11.45□□□□□ -0.58
VPS50-213ENST00000477572 GCGRP47871 477 aa11.43□□□□□ -0.58
VPS50-213ENST00000477572 NR1I2O75469 434 aa11.42□□□□□ -0.58
VPS50-213ENST00000477572 SCUBE3Q8IX30 993 aa11.42□□□□□ -0.58
VPS50-213ENST00000477572 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.42□□□□□ -0.58
VPS50-213ENST00000477572 RGS20O76081 388 aa11.4□□□□□ -0.58
VPS50-213ENST00000477572 REPIN1Q9BWE0 567 aaKnown RBP11.4□□□□□ -0.58
VPS50-213ENST00000477572 CD46P15529 392 aa11.39□□□□□ -0.59
VPS50-213ENST00000477572 GPCPD1Q9NPB8 672 aa11.39□□□□□ -0.59
VPS50-213ENST00000477572 CLCN1P35523 988 aa11.38□□□□□ -0.59
VPS50-213ENST00000477572 ATP6V1AP38606 617 aa11.38□□□□□ -0.59
VPS50-213ENST00000477572 MORN1Q5T089 497 aa11.38□□□□□ -0.59
VPS50-213ENST00000477572 PPEF1O14829 653 aaPredicted RBP11.37□□□□□ -0.59
VPS50-213ENST00000477572 S1PR4O95977 384 aa11.37□□□□□ -0.59
VPS50-213ENST00000477572 TTLL12Q14166 644 aaPredicted RBP11.37□□□□□ -0.59
VPS50-213ENST00000477572 PRKD2Q9BZL6 878 aa11.37□□□□□ -0.59
VPS50-213ENST00000477572 SLC27A5Q9Y2P5 690 aa11.37□□□□□ -0.59
VPS50-213ENST00000477572 GGCXP38435 758 aa11.36□□□□□ -0.59
VPS50-213ENST00000477572 FAM217BQ9NTX9 383 aaPredicted RBP11.36□□□□□ -0.59
VPS50-213ENST00000477572 TMUB1Q9BVT8 246 aa11.35□□□□□ -0.59
VPS50-213ENST00000477572 RNF223E7ERA6 249 aa11.34□□□□□ -0.59
VPS50-213ENST00000477572 ADH1BP00325 375 aa11.34□□□□□ -0.59
VPS50-213ENST00000477572 HLA-CQ95604 372 aa11.34□□□□□ -0.59
VPS50-213ENST00000477572 SPSB2Q99619 263 aa11.34□□□□□ -0.59
VPS50-213ENST00000477572 KDM4AO75164 1064 aa11.33□□□□□ -0.6
VPS50-213ENST00000477572 BCANQ96GW7 911 aa11.33□□□□□ -0.6
VPS50-213ENST00000477572 SSTR3P32745 418 aaPredicted RBP11.31□□□□□ -0.6
VPS50-213ENST00000477572 IRX2Q9BZI1 471 aaPredicted RBP11.31□□□□□ -0.6
VPS50-213ENST00000477572 SLC6A16Q9GZN6 736 aa11.31□□□□□ -0.6
VPS50-213ENST00000477572 TRIM66O15016 1216 aa11.3□□□□□ -0.6
VPS50-213ENST00000477572 RNF19BQ6ZMZ0 732 aa11.3□□□□□ -0.6
VPS50-213ENST00000477572 SLC24A3Q9HC58 644 aa11.3□□□□□ -0.6
VPS50-213ENST00000477572 GUCA2AQ02747 115 aa11.29□□□□□ -0.6
VPS50-213ENST00000477572 AMHR2Q16671 573 aa11.29□□□□□ -0.6
VPS50-213ENST00000477572 GRIPAP1Q4V328 841 aa11.29□□□□□ -0.6
VPS50-213ENST00000477572 THAP11Q96EK4 314 aa11.29□□□□□ -0.6
VPS50-213ENST00000477572 AK7Q96M32 723 aa11.29□□□□□ -0.6
VPS50-213ENST00000477572 FMNL1O95466 1100 aaPredicted RBP11.28□□□□□ -0.6
VPS50-213ENST00000477572 GIGYF2Q6Y7W6 1299 aaKnown RBP11.28□□□□□ -0.6
VPS50-213ENST00000477572 NUTM1Q86Y26 1132 aa11.27□□□□□ -0.61
VPS50-213ENST00000477572 FAM160A2Q8N612 972 aaPredicted RBP11.27□□□□□ -0.61
VPS50-213ENST00000477572 BRICD5Q6PL45 260 aa11.26□□□□□ -0.61
VPS50-213ENST00000477572 PARP9Q8IXQ6 854 aa11.26□□□□□ -0.61
VPS50-213ENST00000477572 PRDM9Q9NQV7 894 aa11.26□□□□□ -0.61
VPS50-213ENST00000477572 HOXA2O43364 376 aa11.25□□□□□ -0.61
VPS50-213ENST00000477572 EMID1Q96A84 441 aaPredicted RBP11.25□□□□□ -0.61
VPS50-213ENST00000477572 PLA2G2CQ5R387 149 aa11.24□□□□□ -0.61
VPS50-213ENST00000477572 ANKLE1Q8NAG6 615 aa11.24□□□□□ -0.61
VPS50-213ENST00000477572 V9GY48 417 aaPredicted RBP11.24□□□□□ -0.61
VPS50-213ENST00000477572 SLC19A1P41440 591 aa11.23□□□□□ -0.61
VPS50-213ENST00000477572 USP46P62068 366 aa11.23□□□□□ -0.61
VPS50-213ENST00000477572 SYMPKQ92797 1274 aaKnown RBP11.22□□□□□ -0.61
VPS50-213ENST00000477572 BEGAINQ9BUH8 593 aa11.22□□□□□ -0.61
VPS50-213ENST00000477572 Q3C1V9 767 aa11.21□□□□□ -0.61
VPS50-213ENST00000477572 LIAT1Q6ZQX7 453 aa11.21□□□□□ -0.61
VPS50-213ENST00000477572 SPIRE2Q8WWL2 714 aa11.21□□□□□ -0.61
VPS50-213ENST00000477572 SALL2Q9Y467 1007 aaPredicted RBP11.21□□□□□ -0.61
VPS50-213ENST00000477572 MS4A1P11836 297 aa11.2□□□□□ -0.62
VPS50-213ENST00000477572 PDE4DQ08499 809 aa11.2□□□□□ -0.62
VPS50-213ENST00000477572 FCF1Q9Y324 198 aaKnown RBP11.2□□□□□ -0.62
VPS50-213ENST00000477572 GFRA3O60609 400 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms