RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 PPP4CP60510 307 aa11.43□□□□□ -0.58
PTCD3-211ENST00000476215 TPRNQ4KMQ1 711 aa11.41□□□□□ -0.58
PTCD3-211ENST00000476215 MAP2K5Q13163 448 aa11.4□□□□□ -0.58
PTCD3-211ENST00000476215 LMOD2Q6P5Q4 547 aa11.4□□□□□ -0.58
PTCD3-211ENST00000476215 PRKCSHP14314 528 aaPredicted RBP11.39□□□□□ -0.59
PTCD3-211ENST00000476215 SLC4A3P48751 1232 aa11.37□□□□□ -0.59
PTCD3-211ENST00000476215 APLP1P51693 650 aa11.36□□□□□ -0.59
PTCD3-211ENST00000476215 MINK1Q8N4C8 1332 aaPredicted RBP11.35□□□□□ -0.59
PTCD3-211ENST00000476215 PHOX2BQ99453 314 aa11.35□□□□□ -0.59
PTCD3-211ENST00000476215 TJAP1Q5JTD0 557 aa11.34□□□□□ -0.59
PTCD3-211ENST00000476215 IRF6O14896 467 aa11.33□□□□□ -0.6
PTCD3-211ENST00000476215 PRR14Q9BWN1 585 aa11.33□□□□□ -0.6
PTCD3-211ENST00000476215 A0A0G2JS52 829 aa11.32□□□□□ -0.6
PTCD3-211ENST00000476215 RNF40O75150 1001 aa11.32□□□□□ -0.6
PTCD3-211ENST00000476215 SLC10A3P09131 477 aa11.32□□□□□ -0.6
PTCD3-211ENST00000476215 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
PTCD3-211ENST00000476215 KCNC4Q03721 635 aa11.31□□□□□ -0.6
PTCD3-211ENST00000476215 ZMYND10O75800 440 aa11.3□□□□□ -0.6
PTCD3-211ENST00000476215 BARGINQ6ZT62 677 aa11.29□□□□□ -0.6
PTCD3-211ENST00000476215 ZC3H15Q8WU90 426 aaKnown RBP11.29□□□□□ -0.6
PTCD3-211ENST00000476215 MTRQ99707 1265 aa11.29□□□□□ -0.6
PTCD3-211ENST00000476215 ACTN4O43707 911 aaKnown RBP11.28□□□□□ -0.6
PTCD3-211ENST00000476215 IL21Q9HBE4 155 aa11.28□□□□□ -0.6
PTCD3-211ENST00000476215 RGS20O76081 388 aa11.27□□□□□ -0.61
PTCD3-211ENST00000476215 CCDC102AQ96A19 550 aa11.27□□□□□ -0.61
PTCD3-211ENST00000476215 CFHP08603 1231 aa11.25□□□□□ -0.61
PTCD3-211ENST00000476215 KMT5BQ4FZB7 885 aa11.25□□□□□ -0.61
PTCD3-211ENST00000476215 RSPH4AQ5TD94 716 aa11.23□□□□□ -0.61
PTCD3-211ENST00000476215 SULF1Q8IWU6 871 aa11.23□□□□□ -0.61
PTCD3-211ENST00000476215 NLRP7Q8WX94 980 aa11.23□□□□□ -0.61
PTCD3-211ENST00000476215 TMUB1Q9BVT8 246 aa11.23□□□□□ -0.61
PTCD3-211ENST00000476215 PCDHB3Q9Y5E6 796 aa11.22□□□□□ -0.61
PTCD3-211ENST00000476215 ZNF516Q92618 1163 aa11.2□□□□□ -0.62
PTCD3-211ENST00000476215 BLOC1S3Q6QNY0 202 aa11.19□□□□□ -0.62
PTCD3-211ENST00000476215 ZPR1O75312 459 aa11.18□□□□□ -0.62
PTCD3-211ENST00000476215 CD46P15529 392 aa11.18□□□□□ -0.62
PTCD3-211ENST00000476215 GCGRP47871 477 aa11.18□□□□□ -0.62
PTCD3-211ENST00000476215 DDX11L8A8MPP1 907 aa11.17□□□□□ -0.62
PTCD3-211ENST00000476215 AMHR2Q16671 573 aa11.17□□□□□ -0.62
PTCD3-211ENST00000476215 COPS2P61201 443 aa11.16□□□□□ -0.62
PTCD3-211ENST00000476215 CLCN1P35523 988 aa11.15□□□□□ -0.62
PTCD3-211ENST00000476215 MDM2Q00987 491 aaPredicted RBP11.15□□□□□ -0.62
PTCD3-211ENST00000476215 RDH13Q8NBN7 331 aa11.15□□□□□ -0.62
PTCD3-211ENST00000476215 GPCPD1Q9NPB8 672 aa11.15□□□□□ -0.62
PTCD3-211ENST00000476215 NKX2-3Q8TAU0 364 aa11.13□□□□□ -0.63
PTCD3-211ENST00000476215 FAM217BQ9NTX9 383 aaPredicted RBP11.13□□□□□ -0.63
PTCD3-211ENST00000476215 NR1I2O75469 434 aa11.12□□□□□ -0.63
PTCD3-211ENST00000476215 KRI1Q8N9T8 703 aaKnown RBP11.12□□□□□ -0.63
PTCD3-211ENST00000476215 MORN1Q5T089 497 aa11.11□□□□□ -0.63
PTCD3-211ENST00000476215 REPIN1Q9BWE0 567 aaKnown RBP11.11□□□□□ -0.63
PTCD3-211ENST00000476215 ATP6V1AP38606 617 aa11.1□□□□□ -0.63
PTCD3-211ENST00000476215 FUT2Q10981 343 aa11.1□□□□□ -0.63
PTCD3-211ENST00000476215 PPP1R18Q6NYC8 613 aa11.09□□□□□ -0.63
PTCD3-211ENST00000476215 SCUBE3Q8IX30 993 aa11.09□□□□□ -0.63
PTCD3-211ENST00000476215 AK7Q96M32 723 aa11.09□□□□□ -0.63
PTCD3-211ENST00000476215 SALL2Q9Y467 1007 aaPredicted RBP11.09□□□□□ -0.63
PTCD3-211ENST00000476215 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.08□□□□□ -0.64
PTCD3-211ENST00000476215 TRIM66O15016 1216 aa11.07□□□□□ -0.64
PTCD3-211ENST00000476215 ADH1BP00325 375 aa11.07□□□□□ -0.64
PTCD3-211ENST00000476215 PUS10Q3MIT2 529 aaKnown RBP11.07□□□□□ -0.64
PTCD3-211ENST00000476215 THAP11Q96EK4 314 aa11.07□□□□□ -0.64
PTCD3-211ENST00000476215 TLL1O43897 1013 aa11.06□□□□□ -0.64
PTCD3-211ENST00000476215 USP46P62068 366 aa11.06□□□□□ -0.64
PTCD3-211ENST00000476215 KDM4AO75164 1064 aa11.04□□□□□ -0.64
PTCD3-211ENST00000476215 GGCXP38435 758 aa11.04□□□□□ -0.64
PTCD3-211ENST00000476215 GRIPAP1Q4V328 841 aa11.04□□□□□ -0.64
PTCD3-211ENST00000476215 SLC24A3Q9HC58 644 aa11.03□□□□□ -0.64
PTCD3-211ENST00000476215 SLC27A5Q9Y2P5 690 aa11.03□□□□□ -0.64
PTCD3-211ENST00000476215 PARP9Q8IXQ6 854 aa11.02□□□□□ -0.65
PTCD3-211ENST00000476215 SSTR3P32745 418 aaPredicted RBP11.01□□□□□ -0.65
PTCD3-211ENST00000476215 BRICD5Q6PL45 260 aa11.01□□□□□ -0.65
PTCD3-211ENST00000476215 GIGYF2Q6Y7W6 1299 aaKnown RBP11.01□□□□□ -0.65
PTCD3-211ENST00000476215 RNF223E7ERA6 249 aa11□□□□□ -0.65
PTCD3-211ENST00000476215 HOXA2O43364 376 aa11□□□□□ -0.65
PTCD3-211ENST00000476215 SPSB2Q99619 263 aa11□□□□□ -0.65
PTCD3-211ENST00000476215 V9GY48 417 aaPredicted RBP11□□□□□ -0.65
PTCD3-211ENST00000476215 TTLL12Q14166 644 aaPredicted RBP10.99□□□□□ -0.65
PTCD3-211ENST00000476215 ANKLE1Q8NAG6 615 aa10.99□□□□□ -0.65
PTCD3-211ENST00000476215 FMNL1O95466 1100 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-211ENST00000476215 S1PR4O95977 384 aa10.98□□□□□ -0.65
PTCD3-211ENST00000476215 SLC6A16Q9GZN6 736 aa10.98□□□□□ -0.65
PTCD3-211ENST00000476215 Q3C1V9 767 aa10.97□□□□□ -0.65
PTCD3-211ENST00000476215 MSS51Q4VC12 460 aa10.97□□□□□ -0.65
PTCD3-211ENST00000476215 PDE4DQ08499 809 aa10.96□□□□□ -0.65
PTCD3-211ENST00000476215 FAM160A2Q8N612 972 aaPredicted RBP10.96□□□□□ -0.65
PTCD3-211ENST00000476215 RNF19BQ6ZMZ0 732 aa10.95□□□□□ -0.66
PTCD3-211ENST00000476215 EMID1Q96A84 441 aaPredicted RBP10.95□□□□□ -0.66
PTCD3-211ENST00000476215 PRKD2Q9BZL6 878 aa10.95□□□□□ -0.66
PTCD3-211ENST00000476215 SPIRE2Q8WWL2 714 aa10.94□□□□□ -0.66
PTCD3-211ENST00000476215 MS4A1P11836 297 aa10.93□□□□□ -0.66
PTCD3-211ENST00000476215 NUTM1Q86Y26 1132 aa10.93□□□□□ -0.66
PTCD3-211ENST00000476215 GJA5P36382 358 aa10.92□□□□□ -0.66
PTCD3-211ENST00000476215 HLA-CQ95604 372 aa10.92□□□□□ -0.66
PTCD3-211ENST00000476215 BEGAINQ9BUH8 593 aa10.91□□□□□ -0.66
PTCD3-211ENST00000476215 MMP16P51512 607 aa10.9□□□□□ -0.66
PTCD3-211ENST00000476215 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
PTCD3-211ENST00000476215 USB1Q9BQ65 265 aaKnown RBP10.89□□□□□ -0.67
PTCD3-211ENST00000476215 IRX2Q9BZI1 471 aaPredicted RBP10.89□□□□□ -0.67
PTCD3-211ENST00000476215 GUCA2AQ02747 115 aa10.88□□□□□ -0.67
PTCD3-211ENST00000476215 DIXDC1Q155Q3 683 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms