RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 KIF3BO15066 747 aa9.6□□□□□ -0.87
ATG4A-207ENST00000474825 PPP1R15AO75807 674 aaPredicted RBP9.6□□□□□ -0.87
ATG4A-207ENST00000474825 KANK1Q14678 1352 aa9.59□□□□□ -0.87
ATG4A-207ENST00000474825 STAG3Q9UJ98 1225 aa9.58□□□□□ -0.88
ATG4A-207ENST00000474825 NEUROD1Q13562 356 aa9.57□□□□□ -0.88
ATG4A-207ENST00000474825 MYT1LQ9UL68 1186 aa9.57□□□□□ -0.88
ATG4A-207ENST00000474825 ARHGAP31Q2M1Z3 1444 aa9.56□□□□□ -0.88
ATG4A-207ENST00000474825 ARHGEF40Q8TER5 1519 aa9.56□□□□□ -0.88
ATG4A-207ENST00000474825 TET3O43151 1660 aa9.56□□□□□ -0.88
ATG4A-207ENST00000474825 TONSLQ96HA7 1378 aa9.55□□□□□ -0.88
ATG4A-207ENST00000474825 POTEGQ6S5H5 508 aa9.55□□□□□ -0.88
ATG4A-207ENST00000474825 EFCAB6Q5THR3 1501 aa9.55□□□□□ -0.88
ATG4A-207ENST00000474825 PAK3O75914 559 aaPredicted RBP9.54□□□□□ -0.88
ATG4A-207ENST00000474825 L3MBTL2Q969R5 705 aa9.54□□□□□ -0.88
ATG4A-207ENST00000474825 ABCC3O15438 1527 aa9.54□□□□□ -0.88
ATG4A-207ENST00000474825 NEURL4Q96JN8 1562 aa9.54□□□□□ -0.88
ATG4A-207ENST00000474825 TRPM2O94759 1503 aa9.53□□□□□ -0.88
ATG4A-207ENST00000474825 E9PCH4 1651 aa9.53□□□□□ -0.88
ATG4A-207ENST00000474825 PCDH10Q9P2E7 1040 aa9.53□□□□□ -0.88
ATG4A-207ENST00000474825 NPATQ14207 1427 aa9.53□□□□□ -0.88
ATG4A-207ENST00000474825 CCDC144AA2RUR9 1427 aa9.52□□□□□ -0.89
ATG4A-207ENST00000474825 NOS1P29475 1434 aa9.52□□□□□ -0.89
ATG4A-207ENST00000474825 UHRF1BP1Q6BDS2 1440 aa9.52□□□□□ -0.89
ATG4A-207ENST00000474825 GGT6Q6P531 493 aa9.52□□□□□ -0.89
ATG4A-207ENST00000474825 SPATA31E1Q6ZUB1 1445 aa9.51□□□□□ -0.89
ATG4A-207ENST00000474825 PHF12Q96QT6 1004 aa9.51□□□□□ -0.89
ATG4A-207ENST00000474825 ZC3H13Q5T200 1668 aaKnown RBP9.51□□□□□ -0.89
ATG4A-207ENST00000474825 WASHC2CQ9Y4E1 1318 aa9.51□□□□□ -0.89
ATG4A-207ENST00000474825 CNTLNQ9NXG0 1405 aa9.5□□□□□ -0.89
ATG4A-207ENST00000474825 STAC3Q96MF2 364 aa9.5□□□□□ -0.89
ATG4A-207ENST00000474825 SIGLEC1Q9BZZ2 1709 aa9.49□□□□□ -0.89
ATG4A-207ENST00000474825 ARID4BQ4LE39 1312 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-207ENST00000474825 PELP1Q8IZL8 1130 aaKnown RBP9.48□□□□□ -0.89
ATG4A-207ENST00000474825 SPHKAPQ2M3C7 1700 aa9.48□□□□□ -0.89
ATG4A-207ENST00000474825 CAMSAP1Q5T5Y3 1602 aa9.47□□□□□ -0.89
ATG4A-207ENST00000474825 ZNF316A6NFI3 1004 aaPredicted RBP9.47□□□□□ -0.89
ATG4A-207ENST00000474825 NBPF8Q3BBV2 869 aa9.47□□□□□ -0.89
ATG4A-207ENST00000474825 CEP152O94986 1710 aa9.46□□□□□ -0.89
ATG4A-207ENST00000474825 CLTCL1P53675 1640 aa9.45□□□□□ -0.9
ATG4A-207ENST00000474825 ASTLQ6HA08 431 aaPredicted RBP9.45□□□□□ -0.9
ATG4A-207ENST00000474825 SLC52A1Q9NWF4 448 aa9.45□□□□□ -0.9
ATG4A-207ENST00000474825 METRNQ9UJH8 293 aa9.44□□□□□ -0.9
ATG4A-207ENST00000474825 PIK3C2BO00750 1634 aa9.44□□□□□ -0.9
ATG4A-207ENST00000474825 SYNMO15061 1565 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 ADGRB3O60242 1522 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 ERVK-7P63135 1459 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 RALGAPBQ86X10 1494 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 PRAG1Q86YV5 1406 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 SLC39A7Q92504 469 aa9.43□□□□□ -0.9
ATG4A-207ENST00000474825 SPATA31D1Q6ZQQ2 1576 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 ZMYM3Q14202 1370 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 GPRASP1Q5JY77 1395 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 C7P10643 843 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 MAMSTRQ6ZN01 415 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 DCAF11Q8TEB1 546 aa9.42□□□□□ -0.9
ATG4A-207ENST00000474825 MYOM2P54296 1465 aa9.41□□□□□ -0.9
ATG4A-207ENST00000474825 NRXN1Q9ULB1 1477 aa9.41□□□□□ -0.9
ATG4A-207ENST00000474825 RPGRIP1LQ68CZ1 1315 aa9.41□□□□□ -0.9
ATG4A-207ENST00000474825 MNX1P50219 401 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-207ENST00000474825 UGGT1Q9NYU2 1555 aa9.41□□□□□ -0.9
ATG4A-207ENST00000474825 PREX1Q8TCU6 1659 aa9.4□□□□□ -0.9
ATG4A-207ENST00000474825 ATMINO43313 823 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-207ENST00000474825 IDI1Q13907 227 aa9.4□□□□□ -0.9
ATG4A-207ENST00000474825 ZFYVE9O95405 1425 aa9.39□□□□□ -0.91
ATG4A-207ENST00000474825 MROH2AA6NES4 1674 aa9.39□□□□□ -0.91
ATG4A-207ENST00000474825 POTEJP0CG39 1038 aa9.39□□□□□ -0.91
ATG4A-207ENST00000474825 RGL3Q3MIN7 710 aa9.39□□□□□ -0.91
ATG4A-207ENST00000474825 FBXO31Q5XUX0 539 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-207ENST00000474825 MS4A3Q96HJ5 214 aa9.39□□□□□ -0.91
ATG4A-207ENST00000474825 CLTCQ00610 1675 aaKnown RBP9.39□□□□□ -0.91
ATG4A-207ENST00000474825 EIF4G2P78344 907 aaKnown RBP eCLIP9.38□□□□□ -0.91
ATG4A-207ENST00000474825 MLECQ14165 292 aa9.37□□□□□ -0.91
ATG4A-207ENST00000474825 LAMC1P11047 1609 aa9.37□□□□□ -0.91
ATG4A-207ENST00000474825 IFT172Q9UG01 1749 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 KIF1BO60333 1816 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 TMEM131LA2VDJ0 1609 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 TRPM1Q7Z4N2 1603 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 MADDQ8WXG6 1647 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 HSPA5P11021 654 aaKnown RBP9.36□□□□□ -0.91
ATG4A-207ENST00000474825 LCE2DQ5TA82 110 aaPredicted RBP9.36□□□□□ -0.91
ATG4A-207ENST00000474825 KDM2AQ9Y2K7 1162 aa9.36□□□□□ -0.91
ATG4A-207ENST00000474825 PTPRMP28827 1452 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 SPDYE4A6NLX3 237 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 ESF1Q9H501 851 aaKnown RBP9.35□□□□□ -0.91
ATG4A-207ENST00000474825 KIAA1210Q9ULL0 1709 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 ADAMTSL3P82987 1691 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 NEXMIFQ5QGS0 1516 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 TNRQ92752 1358 aa9.35□□□□□ -0.91
ATG4A-207ENST00000474825 A2ML1A8K2U0 1454 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 ADGRF5Q8IZF2 1346 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 PIK3C2GO75747 1445 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 NBPF1Q3BBV0 1214 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 USP47Q96K76 1375 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 NLRP1Q9C000 1473 aa9.34□□□□□ -0.91
ATG4A-207ENST00000474825 KDM5AP29375 1690 aaKnown RBP9.33□□□□□ -0.92
ATG4A-207ENST00000474825 VGFO15240 615 aaPredicted RBP9.33□□□□□ -0.92
ATG4A-207ENST00000474825 CARD11Q9BXL7 1154 aa9.33□□□□□ -0.92
ATG4A-207ENST00000474825 C14orf93Q9H972 538 aaKnown RBP9.33□□□□□ -0.92
ATG4A-207ENST00000474825 ROCK2O75116 1388 aaKnown RBP9.33□□□□□ -0.92
ATG4A-207ENST00000474825 DIEXFQ68CQ4 756 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms