RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 SETDB1Q15047 1291 aa4.5□□□□□ -1.69
UBR3-208ENST00000474426 CT47B1P0C2W7 299 aaPredicted RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 CXorf38Q8TB03 319 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 GEMIN8Q9NWZ8 242 aaKnown RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 PARNO95453 639 aaKnown RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 HDAC1Q13547 482 aaPredicted RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 ZKSCAN2Q63HK3 967 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 HSP90AA1P07900 732 aaKnown RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 NBPF6Q5VWK0 638 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 NBPF5PQ86XG9 351 aaPredicted RBP4.49□□□□□ -1.69
UBR3-208ENST00000474426 CREBRFQ8IUR6 639 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 NBPF4Q96M43 638 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 YY1AP1Q9H869 796 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 WDR70Q9NW82 654 aa4.49□□□□□ -1.69
UBR3-208ENST00000474426 EP400NLQ6ZTU2 488 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 ARHGEF10LQ9HCE6 1279 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 ZBTB12Q9Y330 459 aaPredicted RBP4.48□□□□□ -1.69
UBR3-208ENST00000474426 NRDCO43847 1150 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 BDNFP23560 247 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 PPP4R3BQ5MIZ7 849 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 MORC4Q8TE76 937 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 PROCA1Q8NCQ7 364 aaPredicted RBP4.48□□□□□ -1.69
UBR3-208ENST00000474426 HELBQ8NG08 1087 aaPredicted RBP4.48□□□□□ -1.69
UBR3-208ENST00000474426 KCNV2Q8TDN2 545 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 PDCL3Q9H2J4 239 aa4.48□□□□□ -1.69
UBR3-208ENST00000474426 CHGAP10645 457 aaKnown RBP4.47□□□□□ -1.69
UBR3-208ENST00000474426 SMC5Q8IY18 1101 aa4.47□□□□□ -1.69
UBR3-208ENST00000474426 RAI14Q9P0K7 980 aa4.47□□□□□ -1.69
UBR3-208ENST00000474426 CHMP4CQ96CF2 233 aa4.47□□□□□ -1.69
UBR3-208ENST00000474426 SLC20A2Q08357 652 aa4.47□□□□□ -1.69
UBR3-208ENST00000474426 ZKSCAN8Q15776 578 aaPredicted RBP4.47□□□□□ -1.69
UBR3-208ENST00000474426 UTP14CQ5TAP6 766 aaKnown RBP4.47□□□□□ -1.69
UBR3-208ENST00000474426 SMAP1Q8IYB5 467 aaPredicted RBP4.46□□□□□ -1.69
UBR3-208ENST00000474426 NRBP1Q9UHY1 535 aa4.46□□□□□ -1.69
UBR3-208ENST00000474426 DMRT2Q9Y5R5 561 aa4.46□□□□□ -1.69
UBR3-208ENST00000474426 WASHC2AQ641Q2 1341 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 ANP32CO43423 234 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 TDO2P48775 406 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 DDRGK1Q96HY6 314 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 BSDC1Q9NW68 430 aaPredicted RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 FEZ2Q9UHY8 353 aaPredicted RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 CCDC194A0A1B0GVG4 234 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 GYS2P54840 703 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 PPP4CP60510 307 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 PUS10Q3MIT2 529 aaKnown RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 DRC1Q96MC2 740 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 MAGEC2Q9UBF1 373 aaPredicted RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 ZNF777Q9ULD5 760 aaPredicted RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 CALRP27797 417 aaKnown RBP4.46□□□□□ -1.7
UBR3-208ENST00000474426 C1QTNF12Q5T7M4 302 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 IRF2BPLQ9H1B7 796 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 FRMD4BQ9Y2L6 1034 aa4.46□□□□□ -1.7
UBR3-208ENST00000474426 U2SURPO15042 1029 aaKnown RBP4.45□□□□□ -1.7
UBR3-208ENST00000474426 SH3BP5O60239 455 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 CFAP69A5D8W1 941 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 KCNA1Q09470 495 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 UVSSAQ2YD98 709 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 SPOCK3Q9BQ16 436 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 ZHX1Q9UKY1 873 aaPredicted RBP4.45□□□□□ -1.7
UBR3-208ENST00000474426 LIG1P18858 919 aa4.45□□□□□ -1.7
UBR3-208ENST00000474426 NOP58Q9Y2X3 529 aaKnown RBP4.45□□□□□ -1.7
UBR3-208ENST00000474426 IPO8O15397 1037 aaKnown RBP4.44□□□□□ -1.7
UBR3-208ENST00000474426 SATB1Q01826 763 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 RBM46Q8TBY0 533 aaKnown RBP4.44□□□□□ -1.7
UBR3-208ENST00000474426 GNL3LQ9NVN8 582 aaKnown RBP4.44□□□□□ -1.7
UBR3-208ENST00000474426 NEXNQ0ZGT2 675 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 C11orf96Q7Z7L8 435 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 METTL14Q9HCE5 456 aaKnown RBP4.44□□□□□ -1.7
UBR3-208ENST00000474426 CEP126Q9P2H0 1117 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 GABBR1Q9UBS5 961 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 NKX1-1Q15270 411 aaPredicted RBP4.44□□□□□ -1.7
UBR3-208ENST00000474426 BANK1Q8NDB2 785 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 FAM117AQ9C073 453 aa4.44□□□□□ -1.7
UBR3-208ENST00000474426 A6NJR5 290 aa4.43□□□□□ -1.7
UBR3-208ENST00000474426 SREK1Q8WXA9 508 aaKnown RBP4.43□□□□□ -1.7
UBR3-208ENST00000474426 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.43□□□□□ -1.78e-7■□□□□ 10.5
UBR3-208ENST00000474426 C4orf46Q504U0 113 aa4.43□□□□□ -1.7
UBR3-208ENST00000474426 ZC3H12AQ5D1E8 599 aaKnown RBP4.43□□□□□ -1.7
UBR3-208ENST00000474426 PDZRN3Q9UPQ7 1066 aa4.43□□□□□ -1.7
UBR3-208ENST00000474426 PSME1Q06323 249 aa4.43□□□□□ -1.7
UBR3-208ENST00000474426 CTDP1Q9Y5B0 961 aaPredicted RBP4.43□□□□□ -1.7
UBR3-208ENST00000474426 CARNS1A5YM72 827 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 ZMYND10O75800 440 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 IGHDP01880 384 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 TTC30BQ8N4P2 665 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 MRRFQ96E11 262 aaKnown RBP4.42□□□□□ -1.7
UBR3-208ENST00000474426 SSR1P43307 286 aaKnown RBP4.42□□□□□ -1.7
UBR3-208ENST00000474426 WDR78Q5VTH9 848 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.42□□□□□ -1.7
UBR3-208ENST00000474426 KDM4CQ9H3R0 1056 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 SMC3Q9UQE7 1217 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 STK10O94804 968 aaKnown RBP4.42□□□□□ -1.7
UBR3-208ENST00000474426 FAM200BP0CF97 657 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 EVA1CP58658 441 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 DMTNQ08495 405 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 ITFG2Q969R8 447 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 CCDC85AQ96PX6 553 aaPredicted RBP4.42□□□□□ -1.7
UBR3-208ENST00000474426 PUF60Q9UHX1 559 aaKnown RBP4.42□□□□□ -1.7
UBR3-208ENST00000474426 FAN1Q9Y2M0 1017 aa4.42□□□□□ -1.7
UBR3-208ENST00000474426 NAT1P18440 290 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms