RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TLL1O43897 1013 aa10.76□□□□□ -0.69
CCDC88A-212ENST00000474059 TRIM67Q6ZTA4 783 aa10.76□□□□□ -0.69
CCDC88A-212ENST00000474059 NECTIN2Q92692 538 aa10.76□□□□□ -0.69
CCDC88A-212ENST00000474059 SEMA3EO15041 775 aa10.75□□□□□ -0.69
CCDC88A-212ENST00000474059 SLC10A3P09131 477 aa10.75□□□□□ -0.69
CCDC88A-212ENST00000474059 PCDHB3Q9Y5E6 796 aa10.75□□□□□ -0.69
CCDC88A-212ENST00000474059 RNF223E7ERA6 249 aa10.74□□□□□ -0.69
CCDC88A-212ENST00000474059 TMUB1Q9BVT8 246 aa10.74□□□□□ -0.69
CCDC88A-212ENST00000474059 RBM46Q8TBY0 533 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-212ENST00000474059 ACTN4O43707 911 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-212ENST00000474059 NUTM2FA1L443 756 aa10.71□□□□□ -0.69
CCDC88A-212ENST00000474059 PDZRN3Q9UPQ7 1066 aa10.7□□□□□ -0.7
CCDC88A-212ENST00000474059 CFHP08603 1231 aa10.69□□□□□ -0.7
CCDC88A-212ENST00000474059 PRR14Q9BWN1 585 aa10.69□□□□□ -0.7
CCDC88A-212ENST00000474059 GPR37O15354 613 aa10.68□□□□□ -0.7
CCDC88A-212ENST00000474059 GGCXP38435 758 aa10.68□□□□□ -0.7
CCDC88A-212ENST00000474059 PXYLP1Q8TE99 480 aa10.68□□□□□ -0.7
CCDC88A-212ENST00000474059 PPEF1O14829 653 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-212ENST00000474059 FCHSD2O94868 740 aa10.67□□□□□ -0.7
CCDC88A-212ENST00000474059 S1PR4O95977 384 aa10.66□□□□□ -0.7
CCDC88A-212ENST00000474059 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-212ENST00000474059 FECHP22830 423 aa10.65□□□□□ -0.7
CCDC88A-212ENST00000474059 SLC19A1P41440 591 aa10.65□□□□□ -0.7
CCDC88A-212ENST00000474059 SLC4A3P48751 1232 aa10.65□□□□□ -0.7
CCDC88A-212ENST00000474059 LIAT1Q6ZQX7 453 aa10.65□□□□□ -0.7
CCDC88A-212ENST00000474059 TESPA1A2RU30 521 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-212ENST00000474059 PLA2G2CQ5R387 149 aa10.64□□□□□ -0.71
CCDC88A-212ENST00000474059 KMT5BQ4FZB7 885 aa10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 RBM26Q5T8P6 1007 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 SPRYD7Q5W111 196 aa10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 METTL3Q86U44 580 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 P3H3Q8IVL6 736 aa10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 ANKLE1Q8NAG6 615 aa10.63□□□□□ -0.71
CCDC88A-212ENST00000474059 ADH1BP00325 375 aa10.61□□□□□ -0.71
CCDC88A-212ENST00000474059 HIC1Q14526 733 aa10.59□□□□□ -0.71
CCDC88A-212ENST00000474059 PUS10Q3MIT2 529 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-212ENST00000474059 GDF9O60383 454 aa10.58□□□□□ -0.72
CCDC88A-212ENST00000474059 ZNF598Q86UK7 904 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-212ENST00000474059 OATP04181 439 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PRR20EP86478 221 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PRR20CP86479 221 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PRR20DP86480 221 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PRR20BP86481 221 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PRR20AP86496 221 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 SCUBE3Q8IX30 993 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 NLRP7Q8WX94 980 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 PHOX2BQ99453 314 aa10.57□□□□□ -0.72
CCDC88A-212ENST00000474059 NR1I2O75469 434 aa10.55□□□□□ -0.72
CCDC88A-212ENST00000474059 MYT1Q01538 1121 aa10.55□□□□□ -0.72
CCDC88A-212ENST00000474059 GNPATO15228 680 aa10.54□□□□□ -0.72
CCDC88A-212ENST00000474059 ZNF697Q5TEC3 545 aa10.54□□□□□ -0.72
CCDC88A-212ENST00000474059 ZNF787Q6DD87 383 aa10.54□□□□□ -0.72
CCDC88A-212ENST00000474059 THAP11Q96EK4 314 aa10.54□□□□□ -0.72
CCDC88A-212ENST00000474059 SLC6A16Q9GZN6 736 aa10.54□□□□□ -0.72
CCDC88A-212ENST00000474059 POTECB2RU33 542 aa10.52□□□□□ -0.73
CCDC88A-212ENST00000474059 MORN1Q5T089 497 aa10.52□□□□□ -0.73
CCDC88A-212ENST00000474059 PKD2L1Q9P0L9 805 aa10.51□□□□□ -0.73
CCDC88A-212ENST00000474059 TNFRSF10AO00220 468 aa10.5□□□□□ -0.73
CCDC88A-212ENST00000474059 DGAT1O75907 488 aa10.5□□□□□ -0.73
CCDC88A-212ENST00000474059 PLCB2Q00722 1185 aa10.5□□□□□ -0.73
CCDC88A-212ENST00000474059 ZNF775Q96BV0 537 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-212ENST00000474059 DAXXQ9UER7 740 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-212ENST00000474059 FAM160A2Q8N612 972 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-212ENST00000474059 SPSB2Q99619 263 aa10.49□□□□□ -0.73
CCDC88A-212ENST00000474059 FUT2Q10981 343 aa10.48□□□□□ -0.73
CCDC88A-212ENST00000474059 PKDCCQ504Y2 493 aa10.46□□□□□ -0.73
CCDC88A-212ENST00000474059 SLC27A5Q9Y2P5 690 aa10.46□□□□□ -0.73
CCDC88A-212ENST00000474059 PRDM9Q9NQV7 894 aa10.45□□□□□ -0.74
CCDC88A-212ENST00000474059 FAM187AA6NFU0 413 aa10.44□□□□□ -0.74
CCDC88A-212ENST00000474059 DDX11L8A8MPP1 907 aa10.44□□□□□ -0.74
CCDC88A-212ENST00000474059 GCGRP47871 477 aa10.44□□□□□ -0.74
CCDC88A-212ENST00000474059 RDH13Q8NBN7 331 aa10.44□□□□□ -0.74
CCDC88A-212ENST00000474059 ST8SIA5O15466 376 aa10.43□□□□□ -0.74
CCDC88A-212ENST00000474059 ATP6V1AP38606 617 aa10.42□□□□□ -0.74
CCDC88A-212ENST00000474059 FCF1Q9Y324 198 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-212ENST00000474059 RSPH4AQ5TD94 716 aa10.41□□□□□ -0.74
CCDC88A-212ENST00000474059 BRICD5Q6PL45 260 aa10.41□□□□□ -0.74
CCDC88A-212ENST00000474059 RNF19BQ6ZMZ0 732 aa10.41□□□□□ -0.74
CCDC88A-212ENST00000474059 AAASQ9NRG9 546 aa10.41□□□□□ -0.74
CCDC88A-212ENST00000474059 KDM2AQ9Y2K7 1162 aa10.41□□□□□ -0.74
CCDC88A-212ENST00000474059 SMYD5Q6GMV2 418 aa10.4□□□□□ -0.74
CCDC88A-212ENST00000474059 TOR4AQ9NXH8 423 aa10.4□□□□□ -0.74
CCDC88A-212ENST00000474059 RPIAP49247 311 aa10.39□□□□□ -0.75
CCDC88A-212ENST00000474059 SALL2Q9Y467 1007 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-212ENST00000474059 FOXC1Q12948 553 aa10.38□□□□□ -0.75
CCDC88A-212ENST00000474059 DACH1Q9UI36 760 aa10.38□□□□□ -0.75
CCDC88A-212ENST00000474059 LCE2AQ5TA79 106 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-212ENST00000474059 LMOD2Q6P5Q4 547 aa10.37□□□□□ -0.75
CCDC88A-212ENST00000474059 FMNL1O95466 1100 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-212ENST00000474059 MSS51Q4VC12 460 aa10.36□□□□□ -0.75
CCDC88A-212ENST00000474059 GPIHBP1Q8IV16 184 aa10.36□□□□□ -0.75
CCDC88A-212ENST00000474059 AVPP01185 164 aa10.35□□□□□ -0.75
CCDC88A-212ENST00000474059 SULF1Q8IWU6 871 aa10.35□□□□□ -0.75
CCDC88A-212ENST00000474059 CD46P15529 392 aa10.34□□□□□ -0.75
CCDC88A-212ENST00000474059 CRIPAKQ8N1N5 446 aa10.34□□□□□ -0.75
CCDC88A-212ENST00000474059 HLA-CQ95604 372 aa10.32□□□□□ -0.76
CCDC88A-212ENST00000474059 MMP16P51512 607 aa10.3□□□□□ -0.76
CCDC88A-212ENST00000474059 MAP2K5Q13163 448 aa10.29□□□□□ -0.76
CCDC88A-212ENST00000474059 CD2BP2O95400 341 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-212ENST00000474059 IRF6O14896 467 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms