RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 TTC37Q6PGP7 1564 aa12.93□□□□□ -0.34
NUP50-214ENST00000469163 VGLL3A8MV65 326 aa12.92□□□□□ -0.34
NUP50-214ENST00000469163 NEUROD2Q15784 382 aa12.92□□□□□ -0.34
NUP50-214ENST00000469163 IDI1Q13907 227 aa12.92□□□□□ -0.34
NUP50-214ENST00000469163 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
NUP50-214ENST00000469163 KDM5BQ9UGL1 1544 aa12.9□□□□□ -0.34
NUP50-214ENST00000469163 SAMD1Q6SPF0 538 aaPredicted RBP12.9□□□□□ -0.34
NUP50-214ENST00000469163 ARHGEF12Q9NZN5 1544 aa12.9□□□□□ -0.34
NUP50-214ENST00000469163 UHRF1BP1LA0JNW5 1464 aa12.9□□□□□ -0.34
NUP50-214ENST00000469163 NFKBIBQ15653 356 aa12.9□□□□□ -0.34
NUP50-214ENST00000469163 PDCL3Q9H2J4 239 aa12.9□□□□□ -0.34
NUP50-214ENST00000469163 ANKRD30BQ9BXX2 1392 aa12.89□□□□□ -0.35
NUP50-214ENST00000469163 ADGRF5Q8IZF2 1346 aa12.88□□□□□ -0.35
NUP50-214ENST00000469163 YEATS2Q9ULM3 1422 aa12.88□□□□□ -0.35
NUP50-214ENST00000469163 USP47Q96K76 1375 aa12.88□□□□□ -0.35
NUP50-214ENST00000469163 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
NUP50-214ENST00000469163 ABCC10Q5T3U5 1492 aa12.87□□□□□ -0.35
NUP50-214ENST00000469163 CCDC184Q52MB2 194 aa12.87□□□□□ -0.35
NUP50-214ENST00000469163 FTSJ3Q8IY81 847 aaKnown RBP12.87□□□□□ -0.35
NUP50-214ENST00000469163 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.87□□□□□ -0.35
NUP50-214ENST00000469163 HOMEZQ8IX15 550 aa12.87□□□□□ -0.35
NUP50-214ENST00000469163 ARID3AQ99856 593 aa12.86□□□□□ -0.35
NUP50-214ENST00000469163 NCLP19338 710 aaKnown RBP12.86□□□□□ -0.35
NUP50-214ENST00000469163 SECISBP2LQ93073 1101 aaKnown RBP12.86□□□□□ -0.35
NUP50-214ENST00000469163 CDC42BPAQ5VT25 1732 aa12.85□□□□□ -0.35
NUP50-214ENST00000469163 TXNDC2Q86VQ3 553 aa12.85□□□□□ -0.35
NUP50-214ENST00000469163 CABP2Q9NPB3 220 aa12.85□□□□□ -0.35
NUP50-214ENST00000469163 DENND4BO75064 1496 aaPredicted RBP12.85□□□□□ -0.35
NUP50-214ENST00000469163 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.85□□□□□ -0.35
NUP50-214ENST00000469163 ROCK1Q13464 1354 aa12.85□□□□□ -0.35
NUP50-214ENST00000469163 PANK3Q9H999 370 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 KNSTRNQ9Y448 316 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 WAPLQ7Z5K2 1190 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 KIF7Q2M1P5 1343 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 MBD5Q9P267 1494 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 TMF1P82094 1093 aa12.84□□□□□ -0.35
NUP50-214ENST00000469163 NUTM2GQ5VZR2 741 aa12.82□□□□□ -0.36
NUP50-214ENST00000469163 ZNF830Q96NB3 372 aaPredicted RBP12.82□□□□□ -0.36
NUP50-214ENST00000469163 CDC42BPBQ9Y5S2 1711 aa12.81□□□□□ -0.36
NUP50-214ENST00000469163 SAMD9LQ8IVG5 1584 aa12.81□□□□□ -0.36
NUP50-214ENST00000469163 HSPA2P54652 639 aa12.81□□□□□ -0.36
NUP50-214ENST00000469163 DHX29Q7Z478 1369 aaKnown RBP12.81□□□□□ -0.36
NUP50-214ENST00000469163 DDRGK1Q96HY6 314 aa12.8□□□□□ -0.36
NUP50-214ENST00000469163 TCOF1Q13428 1488 aaKnown RBP12.8□□□□□ -0.36
NUP50-214ENST00000469163 ANP32BQ92688 251 aaKnown RBP12.79□□□□□ -0.36
NUP50-214ENST00000469163 PRDM10Q9NQV6 1147 aa12.79□□□□□ -0.36
NUP50-214ENST00000469163 ERBINQ96RT1 1412 aa12.79□□□□□ -0.36
NUP50-214ENST00000469163 SLC12A5Q9H2X9 1139 aa12.79□□□□□ -0.36
NUP50-214ENST00000469163 CDK11BP21127 795 aaKnown RBP12.79□□□□□ -0.36
NUP50-214ENST00000469163 FBLN1P23142 703 aa12.79□□□□□ -0.36
NUP50-214ENST00000469163 MAPK8IP2Q13387 824 aaPredicted RBP12.78□□□□□ -0.36
NUP50-214ENST00000469163 PRAM1Q96QH2 718 aa12.78□□□□□ -0.36
NUP50-214ENST00000469163 DNAJC5Q9H3Z4 198 aa12.78□□□□□ -0.36
NUP50-214ENST00000469163 CENPJQ9HC77 1338 aaPredicted RBP12.78□□□□□ -0.36
NUP50-214ENST00000469163 PZPP20742 1482 aa12.77□□□□□ -0.36
NUP50-214ENST00000469163 VGFO15240 615 aaPredicted RBP12.77□□□□□ -0.36
NUP50-214ENST00000469163 CLCN1P35523 988 aa12.77□□□□□ -0.37
NUP50-214ENST00000469163 CCDC146Q8IYE0 955 aa12.77□□□□□ -0.37
NUP50-214ENST00000469163 U2SURPO15042 1029 aaKnown RBP12.76□□□□□ -0.37
NUP50-214ENST00000469163 SLC4A3P48751 1232 aa12.76□□□□□ -0.37
NUP50-214ENST00000469163 XPCQ01831 940 aaPredicted RBP12.76□□□□□ -0.37
NUP50-214ENST00000469163 TEX2Q8IWB9 1127 aa12.76□□□□□ -0.37
NUP50-214ENST00000469163 PMFBP1Q8TBY8 1022 aa12.76□□□□□ -0.37
NUP50-214ENST00000469163 A2MP01023 1474 aa12.76□□□□□ -0.37
NUP50-214ENST00000469163 NCKAP5LQ9HCH0 1330 aa12.76□□□□□ -0.37
NUP50-214ENST00000469163 EID1Q9Y6B2 187 aa12.75□□□□□ -0.37
NUP50-214ENST00000469163 DNMT1P26358 1616 aaKnown RBP12.75□□□□□ -0.37
NUP50-214ENST00000469163 PREX2Q70Z35 1606 aa12.75□□□□□ -0.37
NUP50-214ENST00000469163 UGGT1Q9NYU2 1555 aa12.75□□□□□ -0.37
NUP50-214ENST00000469163 A0A0G2JS52 829 aa12.75□□□□□ -0.37
NUP50-214ENST00000469163 ZNF518AQ6AHZ1 1483 aa12.74□□□□□ -0.37
NUP50-214ENST00000469163 FRAT2O75474 233 aaPredicted RBP12.74□□□□□ -0.37
NUP50-214ENST00000469163 ITSN2Q9NZM3 1697 aa12.74□□□□□ -0.37
NUP50-214ENST00000469163 FAM135AQ9P2D6 1515 aa12.73□□□□□ -0.37
NUP50-214ENST00000469163 CNPY4Q8N129 248 aa12.73□□□□□ -0.37
NUP50-214ENST00000469163 E9PSI1 815 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 WDR43Q15061 677 aaKnown RBP eCLIP12.72□□□□□ -0.37
NUP50-214ENST00000469163 GGNBP2Q9H3C7 697 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 MYO5CQ9NQX4 1742 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 TMEM51Q9NW97 253 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 FAM13BQ9NYF5 915 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 NOS1P29475 1434 aa12.72□□□□□ -0.37
NUP50-214ENST00000469163 CCER2I3L3R5 266 aa12.71□□□□□ -0.37
NUP50-214ENST00000469163 TPM2P07951 284 aa12.71□□□□□ -0.37
NUP50-214ENST00000469163 LTV1Q96GA3 475 aaPredicted RBP12.71□□□□□ -0.37
NUP50-214ENST00000469163 RRP7AQ9Y3A4 280 aaKnown RBP12.71□□□□□ -0.37
NUP50-214ENST00000469163 L1TD1Q5T7N2 865 aaKnown RBP12.71□□□□□ -0.38
NUP50-214ENST00000469163 ABCA9Q8IUA7 1624 aa12.71□□□□□ -0.38
NUP50-214ENST00000469163 MORC1Q86VD1 984 aa12.7□□□□□ -0.38
NUP50-214ENST00000469163 PRKRIP1Q9H875 184 aaPredicted RBP12.7□□□□□ -0.38
NUP50-214ENST00000469163 CCDC7Q96M83 1385 aa12.7□□□□□ -0.38
NUP50-214ENST00000469163 RPRD2Q5VT52 1461 aaKnown RBP12.7□□□□□ -0.38
NUP50-214ENST00000469163 PPP4R3BQ5MIZ7 849 aa12.69□□□□□ -0.38
NUP50-214ENST00000469163 DNTTIP2Q5QJE6 756 aaKnown RBP12.69□□□□□ -0.38
NUP50-214ENST00000469163 SMAP1Q8IYB5 467 aaPredicted RBP12.69□□□□□ -0.38
NUP50-214ENST00000469163 ATP7AQ04656 1500 aa12.69□□□□□ -0.38
NUP50-214ENST00000469163 POGZQ7Z3K3 1410 aa12.68□□□□□ -0.38
NUP50-214ENST00000469163 WWC1Q8IX03 1113 aa12.67□□□□□ -0.38
NUP50-214ENST00000469163 NGDNQ8NEJ9 315 aaKnown RBP12.67□□□□□ -0.38
NUP50-214ENST00000469163 CABP1Q9NZU7 370 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms