RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ADGRF5Q8IZF2 1346 aa26.49■■□□□ 1.83
SMC4-209ENST00000468653 ST20-MTHFSA0A0A6YYL1 179 aa26.49■■□□□ 1.83
SMC4-209ENST00000468653 SPATA31D1Q6ZQQ2 1576 aa26.45■■□□□ 1.83
SMC4-209ENST00000468653 KIF7Q2M1P5 1343 aa26.45■■□□□ 1.82
SMC4-209ENST00000468653 PPLO60437 1756 aa26.44■■□□□ 1.82
SMC4-209ENST00000468653 NRXN1Q9ULB1 1477 aa26.44■■□□□ 1.82
SMC4-209ENST00000468653 STAG3Q9UJ98 1225 aa26.43■■□□□ 1.82
SMC4-209ENST00000468653 KIAA1210Q9ULL0 1709 aa26.42■■□□□ 1.82
SMC4-209ENST00000468653 POLR1AO95602 1720 aaPredicted RBP26.41■■□□□ 1.82
SMC4-209ENST00000468653 VGFO15240 615 aaPredicted RBP26.41■■□□□ 1.82
SMC4-209ENST00000468653 CFAP70Q5T0N1 1121 aa26.41■■□□□ 1.82
SMC4-209ENST00000468653 TMEM131LA2VDJ0 1609 aa26.4■■□□□ 1.82
SMC4-209ENST00000468653 NEXMIFQ5QGS0 1516 aa26.39■■□□□ 1.81
SMC4-209ENST00000468653 NUTM2DQ5VT03 806 aaPredicted RBP26.37■■□□□ 1.81
SMC4-209ENST00000468653 PIK3C2GO75747 1445 aa26.36■■□□□ 1.81
SMC4-209ENST00000468653 POLR3GLQ9BT43 218 aa26.36■■□□□ 1.81
SMC4-209ENST00000468653 SCAF11Q99590 1463 aaKnown RBP26.36■■□□□ 1.81
SMC4-209ENST00000468653 MYO5BQ9ULV0 1848 aa26.35■■□□□ 1.81
SMC4-209ENST00000468653 ANP32CO43423 234 aa26.34■■□□□ 1.81
SMC4-209ENST00000468653 TNRQ92752 1358 aa26.34■■□□□ 1.81
SMC4-209ENST00000468653 C14orf93Q9H972 538 aaKnown RBP26.33■■□□□ 1.81
SMC4-209ENST00000468653 IQGAP1P46940 1657 aa26.33■■□□□ 1.81
SMC4-209ENST00000468653 ZFYVE9O95405 1425 aa26.32■■□□□ 1.8
SMC4-209ENST00000468653 EIF3AQ14152 1382 aaKnown RBP26.31■■□□□ 1.8
SMC4-209ENST00000468653 TESK2Q96S53 571 aa26.3■■□□□ 1.8
SMC4-209ENST00000468653 A2ML1A8K2U0 1454 aa26.29■■□□□ 1.8
SMC4-209ENST00000468653 FER1L4A9Z1Z3 1794 aa26.28■■□□□ 1.8
SMC4-209ENST00000468653 SETBP1Q9Y6X0 1596 aa26.28■■□□□ 1.8
SMC4-209ENST00000468653 CEBPAP49715 358 aaPredicted RBP26.27■■□□□ 1.8
SMC4-209ENST00000468653 TMF1P82094 1093 aa26.26■■□□□ 1.79
SMC4-209ENST00000468653 RIMS2Q9UQ26 1411 aa26.22■■□□□ 1.79
SMC4-209ENST00000468653 TMEM132EQ6IEE7 984 aa26.22■■□□□ 1.79
SMC4-209ENST00000468653 PLPPR3Q6T4P5 718 aa26.22■■□□□ 1.79
SMC4-209ENST00000468653 C3P01024 1663 aa26.21■■□□□ 1.79
SMC4-209ENST00000468653 DISP3Q9P2K9 1392 aa26.21■■□□□ 1.79
SMC4-209ENST00000468653 ADGRB1O14514 1584 aa26.21■■□□□ 1.79
SMC4-209ENST00000468653 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.19■■□□□ 1.78
SMC4-209ENST00000468653 SENP3Q9H4L4 574 aaPredicted RBP26.19■■□□□ 1.78
SMC4-209ENST00000468653 TRAK1Q9UPV9 953 aa26.18■■□□□ 1.78
SMC4-209ENST00000468653 NLRP1Q9C000 1473 aa26.18■■□□□ 1.78
SMC4-209ENST00000468653 SLC24A1O60721 1099 aa26.18■■□□□ 1.78
SMC4-209ENST00000468653 HDGFP51858 240 aaKnown RBP26.17■■□□□ 1.78
SMC4-209ENST00000468653 CDCA8Q53HL2 280 aa26.15■■□□□ 1.78
SMC4-209ENST00000468653 KDM5AP29375 1690 aaKnown RBP26.15■■□□□ 1.78
SMC4-209ENST00000468653 CCER2I3L3R5 266 aa26.15■■□□□ 1.78
SMC4-209ENST00000468653 YTHDC1Q96MU7 727 aaKnown RBP26.14■■□□□ 1.78
SMC4-209ENST00000468653 CENPJQ9HC77 1338 aaPredicted RBP26.13■■□□□ 1.77
SMC4-209ENST00000468653 UBR1Q8IWV7 1749 aa26.12■■□□□ 1.77
SMC4-209ENST00000468653 MYO3AQ8NEV4 1616 aa26.11■■□□□ 1.77
SMC4-209ENST00000468653 TMEM2Q9UHN6 1383 aa26.1■■□□□ 1.77
SMC4-209ENST00000468653 ALKQ9UM73 1620 aa26.1■■□□□ 1.77
SMC4-209ENST00000468653 RIMS1Q86UR5 1692 aaKnown RBP26.09■■□□□ 1.77
SMC4-209ENST00000468653 SBNO2Q9Y2G9 1366 aa26.08■■□□□ 1.76
SMC4-209ENST00000468653 PRKRIP1Q9H875 184 aaPredicted RBP26.07■■□□□ 1.76
SMC4-209ENST00000468653 STK26Q9P289 416 aa26.07■■□□□ 1.76
SMC4-209ENST00000468653 ASXL1Q8IXJ9 1541 aa26.07■■□□□ 1.76
SMC4-209ENST00000468653 ADAMTSL3P82987 1691 aa26.06■■□□□ 1.76
SMC4-209ENST00000468653 YTHDC2Q9H6S0 1430 aaKnown RBP26.04■■□□□ 1.76
SMC4-209ENST00000468653 BCANQ96GW7 911 aa26.03■■□□□ 1.76
SMC4-209ENST00000468653 QRICH2Q9H0J4 1663 aa26.02■■□□□ 1.76
SMC4-209ENST00000468653 ARHGEF28Q8N1W1 1705 aaKnown RBP26.02■■□□□ 1.76
SMC4-209ENST00000468653 THEMISQ8N1K5 641 aaPredicted RBP26.01■■□□□ 1.75
SMC4-209ENST00000468653 PANK3Q9H999 370 aa26■■□□□ 1.75
SMC4-209ENST00000468653 EID1Q9Y6B2 187 aa26■■□□□ 1.75
SMC4-209ENST00000468653 CENPBP07199 599 aaPredicted RBP26■■□□□ 1.75
SMC4-209ENST00000468653 CNGB1Q14028 1251 aaPredicted RBP26■■□□□ 1.75
SMC4-209ENST00000468653 PTPRMP28827 1452 aa25.99■■□□□ 1.75
SMC4-209ENST00000468653 TXNDC2Q86VQ3 553 aa25.99■■□□□ 1.75
SMC4-209ENST00000468653 NRXN3Q9Y4C0 1643 aa25.97■■□□□ 1.75
SMC4-209ENST00000468653 LTKP29376 864 aa25.97■■□□□ 1.75
SMC4-209ENST00000468653 POGKQ9P215 609 aa25.96■■□□□ 1.75
SMC4-209ENST00000468653 LRPPRCP42704 1394 aaKnown RBP25.96■■□□□ 1.75
SMC4-209ENST00000468653 SAFB2Q14151 953 aaKnown RBP eCLIP25.95■■□□□ 1.75
SMC4-209ENST00000468653 PLEKHG1Q9ULL1 1385 aa25.95■■□□□ 1.74
SMC4-209ENST00000468653 SLIT1O75093 1534 aa25.95■■□□□ 1.74
SMC4-209ENST00000468653 SETD1AO15047 1707 aaKnown RBP25.95■■□□□ 1.74
SMC4-209ENST00000468653 PER1O15534 1290 aaPredicted RBP25.95■■□□□ 1.74
SMC4-209ENST00000468653 PRAM1Q96QH2 718 aa25.95■■□□□ 1.74
SMC4-209ENST00000468653 ARHGAP23Q9P227 1491 aa25.94■■□□□ 1.74
SMC4-209ENST00000468653 EVC2Q86UK5 1308 aa25.93■■□□□ 1.74
SMC4-209ENST00000468653 CEP170BQ9Y4F5 1589 aaPredicted RBP25.92■■□□□ 1.74
SMC4-209ENST00000468653 METP08581 1390 aa25.92■■□□□ 1.74
SMC4-209ENST00000468653 ABCC11Q96J66 1382 aa25.9■■□□□ 1.74
SMC4-209ENST00000468653 DLC1Q96QB1 1528 aa25.9■■□□□ 1.74
SMC4-209ENST00000468653 KTN1Q86UP2 1357 aaKnown RBP25.89■■□□□ 1.74
SMC4-209ENST00000468653 MYOM1P52179 1685 aa25.88■■□□□ 1.73
SMC4-209ENST00000468653 RALBP1Q15311 655 aa25.88■■□□□ 1.73
SMC4-209ENST00000468653 PUS7Q96PZ0 661 aaKnown RBP25.88■■□□□ 1.73
SMC4-209ENST00000468653 ADAMTS13Q76LX8 1427 aa25.88■■□□□ 1.73
SMC4-209ENST00000468653 KNSTRNQ9Y448 316 aa25.87■■□□□ 1.73
SMC4-209ENST00000468653 MINK1Q8N4C8 1332 aaPredicted RBP25.87■■□□□ 1.73
SMC4-209ENST00000468653 TULP4Q9NRJ4 1543 aa25.86■■□□□ 1.73
SMC4-209ENST00000468653 MRS2Q9HD23 443 aa25.86■■□□□ 1.73
SMC4-209ENST00000468653 SETD1BQ9UPS6 1966 aaKnown RBP25.85■■□□□ 1.73
SMC4-209ENST00000468653 CCDC184Q52MB2 194 aa25.84■■□□□ 1.73
SMC4-209ENST00000468653 WAPLQ7Z5K2 1190 aa25.84■■□□□ 1.73
SMC4-209ENST00000468653 TMC1Q8TDI8 760 aa25.84■■□□□ 1.73
SMC4-209ENST00000468653 SLC26A8Q96RN1 970 aa25.83■■□□□ 1.73
SMC4-209ENST00000468653 CC2D1BQ5T0F9 858 aaKnown RBP25.82■■□□□ 1.72
SMC4-209ENST00000468653 CABP2Q9NPB3 220 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms