RNA–Protein interactions for RNA: ENST00000466373.1

UFD1-206, Transcript of ubiquitin recognition factor in ER associated degradation 1, human

TSL 2

Gene UFD1, Length 3,059 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UFD1-206	ENST00000466373	INO80	Q9ULG1	1556 aa	Predicted RBP	13.83	□□□□□ -0.2
UFD1-206	ENST00000466373	IQGAP1	P46940	1657 aa		13.83	□□□□□ -0.2
UFD1-206	ENST00000466373	WDR43	Q15061	677 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
UFD1-206	ENST00000466373	CDCA8	Q53HL2	280 aa		13.83	□□□□□ -0.2
UFD1-206	ENST00000466373	CFAP65	Q6ZU64	1925 aa	Known RBP	13.82	□□□□□ -0.2
UFD1-206	ENST00000466373	GGT6	Q6P531	493 aa		13.82	□□□□□ -0.2
UFD1-206	ENST00000466373	BLM	P54132	1417 aa	Predicted RBP	13.81	□□□□□ -0.2
UFD1-206	ENST00000466373	NPM1	P06748	294 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
UFD1-206	ENST00000466373	EIF3A	Q14152	1382 aa	Known RBP	13.8	□□□□□ -0.2
UFD1-206	ENST00000466373	CCDC146	Q8IYE0	955 aa		13.79	□□□□□ -0.2
UFD1-206	ENST00000466373	STAC3	Q96MF2	364 aa		13.79	□□□□□ -0.2
UFD1-206	ENST00000466373	MROH1	Q8NDA8	1641 aa		13.78	□□□□□ -0.2
UFD1-206	ENST00000466373	SENP3	Q9H4L4	574 aa	Predicted RBP	13.78	□□□□□ -0.2
UFD1-206	ENST00000466373	VWDE	Q8N2E2	1590 aa		13.78	□□□□□ -0.2
UFD1-206	ENST00000466373	PLEKHH1	Q9ULM0	1364 aa		13.77	□□□□□ -0.21
UFD1-206	ENST00000466373	KIDINS220	Q9ULH0	1771 aa		13.77	□□□□□ -0.21
UFD1-206	ENST00000466373	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.77	□□□□□ -0.21
UFD1-206	ENST00000466373	TRAK1	Q9UPV9	953 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	ASXL1	Q8IXJ9	1541 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	SYNM	O15061	1565 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	C20orf194	Q5TEA3	1177 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	SKAP1	Q86WV1	359 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	CRBN	Q96SW2	442 aa		13.76	□□□□□ -0.21
UFD1-206	ENST00000466373	TMEM132E	Q6IEE7	984 aa		13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	CARD14	Q9BXL6	1004 aa		13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	NOS1	P29475	1434 aa		13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	PPRC1	Q5VV67	1664 aa	Known RBP	13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	ZMYM4	Q5VZL5	1548 aa		13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	ABCA6	Q8N139	1617 aa		13.75	□□□□□ -0.21
UFD1-206	ENST00000466373	KIF1B	O60333	1816 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	MAP3K4	Q9Y6R4	1608 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	EFCAB6	Q5THR3	1501 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	OSCAR	Q8IYS5	282 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	ZNF518A	Q6AHZ1	1483 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	MYOM1	P52179	1685 aa		13.74	□□□□□ -0.21
UFD1-206	ENST00000466373	CD109	Q6YHK3	1445 aa		13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	PAK3	O75914	559 aa	Predicted RBP	13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	RAPGEF3	O95398	923 aa		13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	TNNT2	P45379	298 aa	Predicted RBP	13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	ERVK-7	P63135	1459 aa		13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	MROH2A	A6NES4	1674 aa		13.73	□□□□□ -0.21
UFD1-206	ENST00000466373	KDM5A	P29375	1690 aa	Known RBP	13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	APAF1	O14727	1248 aa		13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	DUSP27	Q5VZP5	1158 aa		13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	NPM2	Q86SE8	214 aa	Known RBP	13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	INSR	P06213	1382 aa		13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	GOLGA2	Q08379	1002 aa		13.72	□□□□□ -0.21
UFD1-206	ENST00000466373	ANP32A	P39687	249 aa	Known RBP	13.71	□□□□□ -0.21
UFD1-206	ENST00000466373	NOP58	Q9Y2X3	529 aa	Known RBP	13.71	□□□□□ -0.22
UFD1-206	ENST00000466373	MYOM2	P54296	1465 aa		13.71	□□□□□ -0.22
UFD1-206	ENST00000466373	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.71	□□□□□ -0.22
UFD1-206	ENST00000466373	NPAT	Q14207	1427 aa		13.7	□□□□□ -0.22
UFD1-206	ENST00000466373	SLC12A5	Q9H2X9	1139 aa		13.7	□□□□□ -0.22
UFD1-206	ENST00000466373	KIAA1210	Q9ULL0	1709 aa		13.7	□□□□□ -0.22
UFD1-206	ENST00000466373	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.7	□□□□□ -0.22
UFD1-206	ENST00000466373	PIK3C2G	O75747	1445 aa		13.69	□□□□□ -0.22
UFD1-206	ENST00000466373	POGZ	Q7Z3K3	1410 aa		13.68	□□□□□ -0.22
UFD1-206	ENST00000466373	ZNF521	Q96K83	1311 aa		13.68	□□□□□ -0.22
UFD1-206	ENST00000466373	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	NPC1L1	Q9UHC9	1359 aa		13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	TCERG1	O14776	1098 aa	Known RBP	13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	PDE4A	P27815	886 aa		13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	NBR1	Q14596	966 aa		13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	IFT172	Q9UG01	1749 aa		13.67	□□□□□ -0.22
UFD1-206	ENST00000466373	SLC24A1	O60721	1099 aa		13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	SLFN5	Q08AF3	891 aa		13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	IPO9	Q96P70	1041 aa	Known RBP	13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	C14orf93	Q9H972	538 aa	Known RBP	13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	DMRT2	Q9Y5R5	561 aa		13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	FRMPD1	Q5SYB0	1578 aa		13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	NEUROD2	Q15784	382 aa		13.66	□□□□□ -0.22
UFD1-206	ENST00000466373	ADGRB3	O60242	1522 aa		13.65	□□□□□ -0.22
UFD1-206	ENST00000466373	NEURL4	Q96JN8	1562 aa		13.65	□□□□□ -0.22
UFD1-206	ENST00000466373	MORC1	Q86VD1	984 aa		13.65	□□□□□ -0.23
UFD1-206	ENST00000466373	NSD3	Q9BZ95	1437 aa		13.65	□□□□□ -0.23
UFD1-206	ENST00000466373	NRXN1	Q9ULB1	1477 aa		13.64	□□□□□ -0.23
UFD1-206	ENST00000466373	LMTK2	Q8IWU2	1503 aa		13.64	□□□□□ -0.23
UFD1-206	ENST00000466373	BCAR3	O75815	825 aa		13.63	□□□□□ -0.23
UFD1-206	ENST00000466373	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.63	□□□□□ -0.23
UFD1-206	ENST00000466373	MLH3	Q9UHC1	1453 aa		13.63	□□□□□ -0.23
UFD1-206	ENST00000466373	RRP7A	Q9Y3A4	280 aa	Known RBP	13.63	□□□□□ -0.23
UFD1-206	ENST00000466373	HECW2	Q9P2P5	1572 aa		13.63	□□□□□ -0.23
UFD1-206	ENST00000466373	BACH2	Q9BYV9	841 aa		13.62	□□□□□ -0.23
UFD1-206	ENST00000466373	STK26	Q9P289	416 aa		13.62	□□□□□ -0.23
UFD1-206	ENST00000466373	SBNO2	Q9Y2G9	1366 aa		13.61	□□□□□ -0.23
UFD1-206	ENST00000466373	ABCC3	O15438	1527 aa		13.61	□□□□□ -0.23
UFD1-206	ENST00000466373	PPL	O60437	1756 aa		13.6	□□□□□ -0.23
UFD1-206	ENST00000466373	IDI1	Q13907	227 aa		13.6	□□□□□ -0.23
UFD1-206	ENST00000466373	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.6	□□□□□ -0.23
UFD1-206	ENST00000466373	CABP2	Q9NPB3	220 aa		13.6	□□□□□ -0.23
UFD1-206	ENST00000466373	TRMT2A	Q8IZ69	625 aa	Known RBP	13.59	□□□□□ -0.23
UFD1-206	ENST00000466373	QRICH2	Q9H0J4	1663 aa		13.59	□□□□□ -0.23
UFD1-206	ENST00000466373		E9PSI1	815 aa		13.59	□□□□□ -0.23
UFD1-206	ENST00000466373	ADGRB1	O14514	1584 aa		13.59	□□□□□ -0.23
UFD1-206	ENST00000466373	VGF	O15240	615 aa	Predicted RBP	13.58	□□□□□ -0.23
UFD1-206	ENST00000466373	MTHFS	P49914	203 aa		13.58	□□□□□ -0.23
UFD1-206	ENST00000466373	CFAP74	Q9C0B2	1584 aa		13.58	□□□□□ -0.24
UFD1-206	ENST00000466373	SETBP1	Q9Y6X0	1596 aa		13.58	□□□□□ -0.24
UFD1-206	ENST00000466373	NKTR	P30414	1462 aa	Known RBP	13.58	□□□□□ -0.24
UFD1-206	ENST00000466373	SIGLEC1	Q9BZZ2	1709 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms