RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 TSR2Q969E8 191 aaKnown RBP11.35□□□□□ -0.59
HPS4-208ENST00000464362 ANKRD30BQ9BXX2 1392 aa11.35□□□□□ -0.59
HPS4-208ENST00000464362 DAPK1P53355 1430 aa11.34□□□□□ -0.59
HPS4-208ENST00000464362 SMG6Q86US8 1419 aaKnown RBP11.34□□□□□ -0.59
HPS4-208ENST00000464362 RUNDC1Q96C34 613 aa11.34□□□□□ -0.59
HPS4-208ENST00000464362 MIA2Q96PC5 1412 aa11.33□□□□□ -0.6
HPS4-208ENST00000464362 EVC2Q86UK5 1308 aa11.33□□□□□ -0.6
HPS4-208ENST00000464362 CALD1Q05682 793 aaKnown RBP11.33□□□□□ -0.6
HPS4-208ENST00000464362 DDX49Q9Y6V7 483 aaKnown RBP11.33□□□□□ -0.6
HPS4-208ENST00000464362 GOLGA6L4A6NEF3 574 aa11.32□□□□□ -0.6
HPS4-208ENST00000464362 URB2Q14146 1524 aaKnown RBP11.32□□□□□ -0.6
HPS4-208ENST00000464362 HAP1P54257 671 aaPredicted RBP11.32□□□□□ -0.6
HPS4-208ENST00000464362 C9orf84Q5VXU9 1444 aa11.32□□□□□ -0.6
HPS4-208ENST00000464362 MCCP23508 829 aa11.32□□□□□ -0.6
HPS4-208ENST00000464362 PDZRN3Q9UPQ7 1066 aa11.32□□□□□ -0.6
HPS4-208ENST00000464362 VGFO15240 615 aaPredicted RBP11.31□□□□□ -0.6
HPS4-208ENST00000464362 ZRSR1Q15695 479 aaKnown RBP11.31□□□□□ -0.6
HPS4-208ENST00000464362 STK31Q9BXU1 1019 aa11.31□□□□□ -0.6
HPS4-208ENST00000464362 DIAPH1O60610 1272 aaKnown RBP11.31□□□□□ -0.6
HPS4-208ENST00000464362 C22orf23Q9BZE7 217 aa11.31□□□□□ -0.6
HPS4-208ENST00000464362 C1orf115Q9H7X2 142 aa11.31□□□□□ -0.6
HPS4-208ENST00000464362 EXOSC9Q06265 439 aaKnown RBP11.31□□□□□ -0.6
HPS4-208ENST00000464362 RILPL2Q969X0 211 aa11.31□□□□□ -0.6
HPS4-208ENST00000464362 EFCAB5A4FU69 1503 aa11.31□□□□□ -0.6
HPS4-208ENST00000464362 EPRSP07814 1512 aaKnown RBP11.31□□□□□ -0.6
HPS4-208ENST00000464362 EHBP1L1Q8N3D4 1523 aa11.3□□□□□ -0.6
HPS4-208ENST00000464362 KIAA1211Q6ZU35 1233 aa11.3□□□□□ -0.6
HPS4-208ENST00000464362 DDX19BQ9UMR2 479 aa11.3□□□□□ -0.6
HPS4-208ENST00000464362 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.3□□□□□ -0.6
HPS4-208ENST00000464362 NGDNQ8NEJ9 315 aaKnown RBP11.3□□□□□ -0.6
HPS4-208ENST00000464362 GRIN2BQ13224 1484 aa11.29□□□□□ -0.6
HPS4-208ENST00000464362 TROQ12816 1431 aaPredicted RBP11.29□□□□□ -0.6
HPS4-208ENST00000464362 ZNF330Q9Y3S2 320 aaPredicted RBP11.29□□□□□ -0.6
HPS4-208ENST00000464362 DNMBPQ6XZF7 1577 aa11.29□□□□□ -0.6
HPS4-208ENST00000464362 AMPHP49418 695 aa11.29□□□□□ -0.6
HPS4-208ENST00000464362 NCOA1Q15788 1441 aa11.28□□□□□ -0.6
HPS4-208ENST00000464362 THOC2Q8NI27 1593 aaKnown RBP11.28□□□□□ -0.6
HPS4-208ENST00000464362 ABCC5O15440 1437 aa11.28□□□□□ -0.6
HPS4-208ENST00000464362 DRC7Q8IY82 874 aa11.27□□□□□ -0.61
HPS4-208ENST00000464362 CCDC9Q9Y3X0 531 aaKnown RBP11.27□□□□□ -0.61
HPS4-208ENST00000464362 CHMP5Q9NZZ3 219 aa11.27□□□□□ -0.61
HPS4-208ENST00000464362 PKNOX2Q96KN3 472 aa11.26□□□□□ -0.61
HPS4-208ENST00000464362 TARBP1Q13395 1621 aaKnown RBP11.26□□□□□ -0.61
HPS4-208ENST00000464362 HMMRO75330 724 aa11.26□□□□□ -0.61
HPS4-208ENST00000464362 COG3Q96JB2 828 aa11.26□□□□□ -0.61
HPS4-208ENST00000464362 CYB5RLQ6IPT4 315 aa11.26□□□□□ -0.61
HPS4-208ENST00000464362 VSIG10Q8N0Z9 540 aa11.25□□□□□ -0.61
HPS4-208ENST00000464362 PLB1Q6P1J6 1458 aa11.25□□□□□ -0.61
HPS4-208ENST00000464362 DDX11L8A8MPP1 907 aa11.25□□□□□ -0.61
HPS4-208ENST00000464362 HDGFP51858 240 aaKnown RBP11.25□□□□□ -0.61
HPS4-208ENST00000464362 ST18O60284 1047 aa11.25□□□□□ -0.61
HPS4-208ENST00000464362 ARHGAP5Q13017 1502 aa11.24□□□□□ -0.61
HPS4-208ENST00000464362 SUPT6HQ7KZ85 1726 aaKnown RBP11.24□□□□□ -0.61
HPS4-208ENST00000464362 EIF2S2P20042 333 aaKnown RBP11.24□□□□□ -0.61
HPS4-208ENST00000464362 PRKAR2BP31323 418 aa11.24□□□□□ -0.61
HPS4-208ENST00000464362 ERBINQ96RT1 1412 aa11.24□□□□□ -0.61
HPS4-208ENST00000464362 ABCA10Q8WWZ4 1543 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 PTPN23Q9H3S7 1636 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 SLFN5Q08AF3 891 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 LMOD3Q0VAK6 560 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 ZNF428Q96B54 188 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 CHMP3Q9Y3E7 222 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 ARHGEF11O15085 1522 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 NUTM2GQ5VZR2 741 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 PODXL2Q9NZ53 605 aa11.23□□□□□ -0.61
HPS4-208ENST00000464362 NOB1Q9ULX3 412 aaKnown RBP11.23□□□□□ -0.61
HPS4-208ENST00000464362 WWC1Q8IX03 1113 aa11.22□□□□□ -0.61
HPS4-208ENST00000464362 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
HPS4-208ENST00000464362 TRHP20396 242 aaPredicted RBP11.22□□□□□ -0.61
HPS4-208ENST00000464362 PDE3AQ14432 1141 aa11.22□□□□□ -0.61
HPS4-208ENST00000464362 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.22□□□□□ -0.61
HPS4-208ENST00000464362 RPRD2Q5VT52 1461 aaKnown RBP11.21□□□□□ -0.61
HPS4-208ENST00000464362 TRAK2O60296 914 aa11.21□□□□□ -0.61
HPS4-208ENST00000464362 ANO2Q9NQ90 1003 aa11.21□□□□□ -0.61
HPS4-208ENST00000464362 SCAPERQ9BY12 1400 aa11.21□□□□□ -0.61
HPS4-208ENST00000464362 SNAPC4Q5SXM2 1469 aa11.21□□□□□ -0.61
HPS4-208ENST00000464362 ABCA5Q8WWZ7 1642 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 AMER1Q5JTC6 1135 aaPredicted RBP11.21□□□□□ -0.62
HPS4-208ENST00000464362 WDR62O43379 1518 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 KIAA2012Q0VF49 1180 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 MCTP1Q6DN14 999 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 NGEFQ8N5V2 710 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 PRAM1Q96QH2 718 aa11.21□□□□□ -0.62
HPS4-208ENST00000464362 FKBP5Q13451 457 aaPredicted RBP11.2□□□□□ -0.62
HPS4-208ENST00000464362 HSP90AA2PQ14568 343 aaPredicted RBP11.2□□□□□ -0.62
HPS4-208ENST00000464362 CFAP44Q96MT7 982 aa11.2□□□□□ -0.62
HPS4-208ENST00000464362 KIF16BQ96L93 1317 aa11.2□□□□□ -0.62
HPS4-208ENST00000464362 DUSP27Q5VZP5 1158 aa11.2□□□□□ -0.62
HPS4-208ENST00000464362 ROCK1Q13464 1354 aa11.2□□□□□ -0.62
HPS4-208ENST00000464362 RNF214Q8ND24 703 aa11.2□□□□□ -0.62
HPS4-208ENST00000464362 CSB-PGBD3P0DP91 1061 aa11.19□□□□□ -0.62
HPS4-208ENST00000464362 MAP3K1Q13233 1512 aa11.19□□□□□ -0.62
HPS4-208ENST00000464362 CHAF1AQ13111 956 aaPredicted RBP11.18□□□□□ -0.62
HPS4-208ENST00000464362 MPNDQ8N594 471 aa11.18□□□□□ -0.62
HPS4-208ENST00000464362 CABP1Q9NZU7 370 aa11.18□□□□□ -0.62
HPS4-208ENST00000464362 SYNJ2O15056 1496 aa11.18□□□□□ -0.62
HPS4-208ENST00000464362 API5Q9BZZ5 524 aaKnown RBP11.18□□□□□ -0.62
HPS4-208ENST00000464362 DISP3Q9P2K9 1392 aa11.18□□□□□ -0.62
HPS4-208ENST00000464362 HECW1Q76N89 1606 aa11.18□□□□□ -0.62
HPS4-208ENST00000464362 RSPH6AQ9H0K4 717 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms