RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 SPATA31E1Q6ZUB1 1445 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 NRDCO43847 1150 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 RPGRIP1LQ68CZ1 1315 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 KDM5DQ9BY66 1539 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 GPRASP1Q5JY77 1395 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 CHMP4CQ96CF2 233 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 CSPP1Q1MSJ5 1256 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 HMMRO75330 724 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 CLUAP1Q96AJ1 413 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 PIK3C2GO75747 1445 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 MRE11P49959 708 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 FOXD1Q16676 465 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 WDR63Q8IWG1 891 aa8.81□□□□□ -1
SYNE1-216ENST00000461872 ABCC11Q96J66 1382 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 EVC2Q86UK5 1308 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 GOLGA6L6A8MZA4 724 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 EXOC6Q8TAG9 804 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 PUS7Q96PZ0 661 aaKnown RBP8.8□□□□□ -1
SYNE1-216ENST00000461872 ADCY10Q96PN6 1610 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 HDGFL2Q7Z4V5 671 aaPredicted RBP8.8□□□□□ -1
SYNE1-216ENST00000461872 RUNDC1Q96C34 613 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 FAM135AQ9P2D6 1515 aa8.8□□□□□ -1
SYNE1-216ENST00000461872 ESF1Q9H501 851 aaKnown RBP8.79□□□□□ -1
SYNE1-216ENST00000461872 NUP153P49790 1475 aaKnown RBP8.79□□□□□ -1
SYNE1-216ENST00000461872 SCAF11Q99590 1463 aaKnown RBP8.79□□□□□ -1
SYNE1-216ENST00000461872 PTPRKQ15262 1439 aa8.79□□□□□ -1
SYNE1-216ENST00000461872 ATP6V1DQ9Y5K8 247 aa8.79□□□□□ -1
SYNE1-216ENST00000461872 NAP1L5Q96NT1 182 aaPredicted RBP8.79□□□□□ -1
SYNE1-216ENST00000461872 COL17A1Q9UMD9 1497 aaPredicted RBP8.78□□□□□ -1
SYNE1-216ENST00000461872 NBPF8Q3BBV2 869 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 LAMC1P11047 1609 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 ST18O60284 1047 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 VGFO15240 615 aaPredicted RBP8.78□□□□□ -1
SYNE1-216ENST00000461872 NFKBIBQ15653 356 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 PRAG1Q86YV5 1406 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 FRAT1Q92837 279 aaPredicted RBP8.78□□□□□ -1
SYNE1-216ENST00000461872 BLMP54132 1417 aaPredicted RBP8.78□□□□□ -1
SYNE1-216ENST00000461872 STAG3Q9UJ98 1225 aa8.78□□□□□ -1
SYNE1-216ENST00000461872 HTATSF1O43719 755 aaKnown RBP8.77□□□□□ -1.01
SYNE1-216ENST00000461872 NUCB2P80303 420 aa8.77□□□□□ -1.01
SYNE1-216ENST00000461872 ASXL1Q8IXJ9 1541 aa8.77□□□□□ -1.01
SYNE1-216ENST00000461872 REC8O95072 547 aa8.77□□□□□ -1.01
SYNE1-216ENST00000461872 CRBNQ96SW2 442 aa8.77□□□□□ -1.01
SYNE1-216ENST00000461872 KIAA2012Q0VF49 1180 aa8.77□□□□□ -1.01
SYNE1-216ENST00000461872 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-216ENST00000461872 KDM5CP41229 1560 aa8.76□□□□□ -1.01
SYNE1-216ENST00000461872 TPM2P07951 284 aa8.76□□□□□ -1.01
SYNE1-216ENST00000461872 MCM2P49736 904 aa8.76□□□□□ -1.01
SYNE1-216ENST00000461872 PRG4Q92954 1404 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-216ENST00000461872 PZPP20742 1482 aa8.75□□□□□ -1.01
SYNE1-216ENST00000461872 CHGAP10645 457 aaKnown RBP8.75□□□□□ -1.01
SYNE1-216ENST00000461872 PLPPR3Q6T4P5 718 aa8.75□□□□□ -1.01
SYNE1-216ENST00000461872 PTMAP06454 111 aaKnown RBP8.75□□□□□ -1.01
SYNE1-216ENST00000461872 MBD5Q9P267 1494 aa8.75□□□□□ -1.01
SYNE1-216ENST00000461872 PPP2R1AP30153 589 aa8.74□□□□□ -1.01
SYNE1-216ENST00000461872 DZIP1LQ8IYY4 767 aaKnown RBP8.74□□□□□ -1.01
SYNE1-216ENST00000461872 API5Q9BZZ5 524 aaKnown RBP8.74□□□□□ -1.01
SYNE1-216ENST00000461872 DHX8Q14562 1220 aaKnown RBP8.74□□□□□ -1.01
SYNE1-216ENST00000461872 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
SYNE1-216ENST00000461872 TPM3P06753 285 aa8.74□□□□□ -1.01
SYNE1-216ENST00000461872 SMC4Q9NTJ3 1288 aa8.74□□□□□ -1.01
SYNE1-216ENST00000461872 RTEL1-TNFRSF6BF6WH68 1400 aa8.74□□□□□ -1.01
SYNE1-216ENST00000461872 MAST1Q9Y2H9 1570 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 KLHL34Q8N239 644 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 POGKQ9P215 609 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 U2AF1L5P0DN76 240 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-216ENST00000461872 U2AF1Q01081 240 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-216ENST00000461872 CROCC2H7BZ55 1655 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 MBD3O95983 291 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 ABCC2Q92887 1545 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 HNRNPMP52272 730 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-216ENST00000461872 IL16Q14005 1332 aa8.73□□□□□ -1.01
SYNE1-216ENST00000461872 SBNO2Q9Y2G9 1366 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 GCC1Q96CN9 775 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 CCDC27Q2M243 656 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 ATP10AO60312 1499 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 WDR7Q9Y4E6 1490 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 EIF4G3O43432 1585 aaKnown RBP8.72□□□□□ -1.01
SYNE1-216ENST00000461872 ATAD2Q6PL18 1390 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 HSP90AA2PQ14568 343 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-216ENST00000461872 ITPRIPQ8IWB1 547 aa8.72□□□□□ -1.01
SYNE1-216ENST00000461872 RRP9O43818 475 aaKnown RBP8.72□□□□□ -1.01
SYNE1-216ENST00000461872 MSH5O43196 834 aa8.71□□□□□ -1.01
SYNE1-216ENST00000461872 SYNMO15061 1565 aa8.71□□□□□ -1.01
SYNE1-216ENST00000461872 SLFN5Q08AF3 891 aa8.71□□□□□ -1.02
SYNE1-216ENST00000461872 RABEP1Q15276 862 aa8.71□□□□□ -1.02
SYNE1-216ENST00000461872 CEP170Q5SW79 1584 aa8.71□□□□□ -1.02
SYNE1-216ENST00000461872 CWC22Q9HCG8 908 aaKnown RBP8.71□□□□□ -1.02
SYNE1-216ENST00000461872 HMGN5P82970 282 aaKnown RBP8.71□□□□□ -1.02
SYNE1-216ENST00000461872 POLR3AO14802 1390 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-216ENST00000461872 ZNF644Q9H582 1327 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-216ENST00000461872 KIF3AQ9Y496 699 aa8.7□□□□□ -1.02
SYNE1-216ENST00000461872 GNAI1P63096 354 aa8.7□□□□□ -1.02
SYNE1-216ENST00000461872 C22orf23Q9BZE7 217 aa8.7□□□□□ -1.02
SYNE1-216ENST00000461872 MCM5P33992 734 aa8.7□□□□□ -1.02
SYNE1-216ENST00000461872 ZRSR1Q15695 479 aaKnown RBP8.7□□□□□ -1.02
SYNE1-216ENST00000461872 KDM5AP29375 1690 aaKnown RBP8.7□□□□□ -1.02
SYNE1-216ENST00000461872 PLXNC1O60486 1568 aa8.7□□□□□ -1.02
SYNE1-216ENST00000461872 CCDC173Q0VFZ6 552 aa8.69□□□□□ -1.02
SYNE1-216ENST00000461872 PLEKHH1Q9ULM0 1364 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms