RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 RCAN3Q9UKA8 241 aa11.31□□□□□ -0.6
VPS50-208ENST00000458707 BLMP54132 1417 aaPredicted RBP11.3□□□□□ -0.6
VPS50-208ENST00000458707 CARMIL2Q6F5E8 1435 aa11.3□□□□□ -0.6
VPS50-208ENST00000458707 SOCS7O14512 581 aa11.3□□□□□ -0.6
VPS50-208ENST00000458707 GPRASP1Q5JY77 1395 aa11.3□□□□□ -0.6
VPS50-208ENST00000458707 PLEKHH2Q8IVE3 1493 aa11.3□□□□□ -0.6
VPS50-208ENST00000458707 COL17A1Q9UMD9 1497 aaPredicted RBP11.3□□□□□ -0.6
VPS50-208ENST00000458707 MAST1Q9Y2H9 1570 aa11.3□□□□□ -0.6
VPS50-208ENST00000458707 CNGB1Q14028 1251 aaPredicted RBP11.29□□□□□ -0.6
VPS50-208ENST00000458707 EXOC6Q8TAG9 804 aa11.29□□□□□ -0.6
VPS50-208ENST00000458707 ZNF777Q9ULD5 760 aaPredicted RBP11.29□□□□□ -0.6
VPS50-208ENST00000458707 WASHC2CQ9Y4E1 1318 aa11.29□□□□□ -0.6
VPS50-208ENST00000458707 NUP160Q12769 1436 aa11.29□□□□□ -0.6
VPS50-208ENST00000458707 SAMD9LQ8IVG5 1584 aa11.29□□□□□ -0.6
VPS50-208ENST00000458707 RNF17Q9BXT8 1623 aaKnown RBP11.29□□□□□ -0.6
VPS50-208ENST00000458707 RTL5Q5HYW3 569 aaPredicted RBP11.29□□□□□ -0.6
VPS50-208ENST00000458707 LMTK3Q96Q04 1460 aa11.29□□□□□ -0.6
VPS50-208ENST00000458707 IQGAP3Q86VI3 1631 aa11.28□□□□□ -0.6
VPS50-208ENST00000458707 ATP10BO94823 1461 aa11.28□□□□□ -0.6
VPS50-208ENST00000458707 PER1O15534 1290 aaPredicted RBP11.27□□□□□ -0.6
VPS50-208ENST00000458707 BACH2Q9BYV9 841 aa11.27□□□□□ -0.6
VPS50-208ENST00000458707 PDE4AP27815 886 aa11.27□□□□□ -0.61
VPS50-208ENST00000458707 DCAF11Q8TEB1 546 aa11.27□□□□□ -0.61
VPS50-208ENST00000458707 VIRMAQ69YN4 1812 aaKnown RBP11.26□□□□□ -0.61
VPS50-208ENST00000458707 CCDC141Q6ZP82 1450 aa11.26□□□□□ -0.61
VPS50-208ENST00000458707 USP35Q9P2H5 1018 aa11.26□□□□□ -0.61
VPS50-208ENST00000458707 PLXNC1O60486 1568 aa11.26□□□□□ -0.61
VPS50-208ENST00000458707 SENP3-EIF4A1A0A087X0R7 540 aa11.25□□□□□ -0.61
VPS50-208ENST00000458707 KDM4FA0A1W2PPD8 638 aa11.25□□□□□ -0.61
VPS50-208ENST00000458707 TSPY4P0CV99 314 aa11.25□□□□□ -0.61
VPS50-208ENST00000458707 TSPY10P0CW01 314 aa11.25□□□□□ -0.61
VPS50-208ENST00000458707 A2MP01023 1474 aa11.24□□□□□ -0.61
VPS50-208ENST00000458707 PLEKHD1A6NEE1 506 aa11.24□□□□□ -0.61
VPS50-208ENST00000458707 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
VPS50-208ENST00000458707 CCDC144AA2RUR9 1427 aa11.24□□□□□ -0.61
VPS50-208ENST00000458707 IQGAP1P46940 1657 aa11.24□□□□□ -0.61
VPS50-208ENST00000458707 PLA2R1Q13018 1463 aa11.23□□□□□ -0.61
VPS50-208ENST00000458707 ATP10AO60312 1499 aa11.23□□□□□ -0.61
VPS50-208ENST00000458707 CLASP1Q7Z460 1538 aa11.22□□□□□ -0.61
VPS50-208ENST00000458707 CLCN6P51797 869 aa11.22□□□□□ -0.61
VPS50-208ENST00000458707 LHX8Q68G74 356 aa11.21□□□□□ -0.61
VPS50-208ENST00000458707 MAGI2Q86UL8 1455 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 ERBINQ96RT1 1412 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 RSPH4AQ5TD94 716 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 CDCA7LQ96GN5 454 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 JPH4Q96JJ6 628 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 TESK2Q96S53 571 aa11.21□□□□□ -0.62
VPS50-208ENST00000458707 DISP3Q9P2K9 1392 aa11.2□□□□□ -0.62
VPS50-208ENST00000458707 PPM1GO15355 546 aaPredicted RBP11.2□□□□□ -0.62
VPS50-208ENST00000458707 FARP1Q9Y4F1 1045 aaPredicted RBP11.2□□□□□ -0.62
VPS50-208ENST00000458707 SPHKAPQ2M3C7 1700 aa11.19□□□□□ -0.62
VPS50-208ENST00000458707 CHMP7Q8WUX9 453 aaPredicted RBP11.19□□□□□ -0.62
VPS50-208ENST00000458707 SYCP2Q9BX26 1530 aa11.19□□□□□ -0.62
VPS50-208ENST00000458707 CEP152O94986 1710 aa11.19□□□□□ -0.62
VPS50-208ENST00000458707 NPM2Q86SE8 214 aaKnown RBP11.19□□□□□ -0.62
VPS50-208ENST00000458707 SYNMO15061 1565 aa11.19□□□□□ -0.62
VPS50-208ENST00000458707 MYOM1P52179 1685 aa11.19□□□□□ -0.62
VPS50-208ENST00000458707 MADDQ8WXG6 1647 aa11.18□□□□□ -0.62
VPS50-208ENST00000458707 CD44P16070 742 aaKnown RBP11.18□□□□□ -0.62
VPS50-208ENST00000458707 HNRNPMP52272 730 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS50-208ENST00000458707 NBPF1Q3BBV0 1214 aa11.18□□□□□ -0.62
VPS50-208ENST00000458707 DDRGK1Q96HY6 314 aa11.18□□□□□ -0.62
VPS50-208ENST00000458707 TTC37Q6PGP7 1564 aa11.17□□□□□ -0.62
VPS50-208ENST00000458707 KDM2BQ8NHM5 1336 aa11.17□□□□□ -0.62
VPS50-208ENST00000458707 NEFMP07197 916 aa11.17□□□□□ -0.62
VPS50-208ENST00000458707 CRBNQ96SW2 442 aa11.17□□□□□ -0.62
VPS50-208ENST00000458707 WDR7Q9Y4E6 1490 aa11.16□□□□□ -0.62
VPS50-208ENST00000458707 DUOX2Q9NRD8 1548 aa11.16□□□□□ -0.62
VPS50-208ENST00000458707 KIAA1210Q9ULL0 1709 aa11.15□□□□□ -0.62
VPS50-208ENST00000458707 PANK3Q9H999 370 aa11.15□□□□□ -0.62
VPS50-208ENST00000458707 PLIN1O60240 522 aa11.15□□□□□ -0.63
VPS50-208ENST00000458707 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS50-208ENST00000458707 TMF1P82094 1093 aa11.14□□□□□ -0.63
VPS50-208ENST00000458707 CC2D1BQ5T0F9 858 aaKnown RBP11.14□□□□□ -0.63
VPS50-208ENST00000458707 LAS1LQ9Y4W2 734 aaKnown RBP11.14□□□□□ -0.63
VPS50-208ENST00000458707 ERCC6L2Q5T890 1561 aa11.14□□□□□ -0.63
VPS50-208ENST00000458707 ZNF521Q96K83 1311 aa11.13□□□□□ -0.63
VPS50-208ENST00000458707 ARHGAP5Q13017 1502 aa11.13□□□□□ -0.63
VPS50-208ENST00000458707 CENPQQ7L2Z9 268 aaPredicted RBP11.12□□□□□ -0.63
VPS50-208ENST00000458707 KDM5AP29375 1690 aaKnown RBP11.12□□□□□ -0.63
VPS50-208ENST00000458707 ABCC2Q92887 1545 aa11.12□□□□□ -0.63
VPS50-208ENST00000458707 ILDR2Q71H61 639 aa11.12□□□□□ -0.63
VPS50-208ENST00000458707 PLEKHH1Q9ULM0 1364 aa11.12□□□□□ -0.63
VPS50-208ENST00000458707 PIK3C2GO75747 1445 aa11.12□□□□□ -0.63
VPS50-208ENST00000458707 ASXL1Q8IXJ9 1541 aa11.11□□□□□ -0.63
VPS50-208ENST00000458707 SHROOM2Q13796 1616 aa11.11□□□□□ -0.63
VPS50-208ENST00000458707 DUSP27Q5VZP5 1158 aa11.11□□□□□ -0.63
VPS50-208ENST00000458707 RGL3Q3MIN7 710 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 C20orf194Q5TEA3 1177 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 ADAMTS8Q9UP79 889 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 TRPM2O94759 1503 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 POTEIP0CG38 1075 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 NPC1L1Q9UHC9 1359 aa11.1□□□□□ -0.63
VPS50-208ENST00000458707 DEPDC5O75140 1603 aa11.09□□□□□ -0.63
VPS50-208ENST00000458707 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
VPS50-208ENST00000458707 ARXQ96QS3 562 aa11.09□□□□□ -0.63
VPS50-208ENST00000458707 NEURL4Q96JN8 1562 aa11.09□□□□□ -0.63
VPS50-208ENST00000458707 SCAPERQ9BY12 1400 aa11.09□□□□□ -0.63
VPS50-208ENST00000458707 EIF3AQ14152 1382 aaKnown RBP11.09□□□□□ -0.63
VPS50-208ENST00000458707 PPP2R1AP30153 589 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms