RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 TNNT2P45379 298 aaPredicted RBP12.46□□□□□ -0.41
KLHL3-202ENST00000447439 NUTM2DQ5VT03 806 aaPredicted RBP12.46□□□□□ -0.41
KLHL3-202ENST00000447439 UHRF1BP1LA0JNW5 1464 aa12.46□□□□□ -0.41
KLHL3-202ENST00000447439 SCAF11Q99590 1463 aaKnown RBP12.46□□□□□ -0.41
KLHL3-202ENST00000447439 TRPM2O94759 1503 aa12.46□□□□□ -0.41
KLHL3-202ENST00000447439 IPO9Q96P70 1041 aaKnown RBP12.45□□□□□ -0.42
KLHL3-202ENST00000447439 SPINK5Q9NQ38 1064 aaPredicted RBP12.45□□□□□ -0.42
KLHL3-202ENST00000447439 KANK1Q14678 1352 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 PTPRTO14522 1441 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 ADGRL1O94910 1474 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 ATP7AQ04656 1500 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 ZMYM4Q5VZL5 1548 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 PDE4AP27815 886 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 CARD14Q9BXL6 1004 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
KLHL3-202ENST00000447439 APAF1O14727 1248 aa12.44□□□□□ -0.42
KLHL3-202ENST00000447439 DUSP27Q5VZP5 1158 aa12.44□□□□□ -0.42
KLHL3-202ENST00000447439 GGT6Q6P531 493 aa12.44□□□□□ -0.42
KLHL3-202ENST00000447439 IQGAP1P46940 1657 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 SPHKAPQ2M3C7 1700 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 RTEL1-TNFRSF6BF6WH68 1400 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 TRAK1Q9UPV9 953 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 ARAP3Q8WWN8 1544 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 TMEM132EQ6IEE7 984 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 ZBTB47Q9UFB7 747 aaPredicted RBP12.43□□□□□ -0.42
KLHL3-202ENST00000447439 CEP152O94986 1710 aa12.43□□□□□ -0.42
KLHL3-202ENST00000447439 INSRP06213 1382 aa12.42□□□□□ -0.42
KLHL3-202ENST00000447439 DEPDC5O75140 1603 aa12.41□□□□□ -0.42
KLHL3-202ENST00000447439 CDCA8Q53HL2 280 aa12.41□□□□□ -0.42
KLHL3-202ENST00000447439 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
KLHL3-202ENST00000447439 ASXL2Q76L83 1435 aa12.41□□□□□ -0.42
KLHL3-202ENST00000447439 ASXL1Q8IXJ9 1541 aa12.41□□□□□ -0.42
KLHL3-202ENST00000447439 TCERG1O14776 1098 aaKnown RBP12.4□□□□□ -0.42
KLHL3-202ENST00000447439 NEUROD2Q15784 382 aa12.4□□□□□ -0.42
KLHL3-202ENST00000447439 BCAR3O75815 825 aa12.39□□□□□ -0.43
KLHL3-202ENST00000447439 LAS1LQ9Y4W2 734 aaKnown RBP12.39□□□□□ -0.43
KLHL3-202ENST00000447439 ERVK-7P63135 1459 aa12.39□□□□□ -0.43
KLHL3-202ENST00000447439 EIF3AQ14152 1382 aaKnown RBP12.39□□□□□ -0.43
KLHL3-202ENST00000447439 DEKP35659 375 aaKnown RBP12.39□□□□□ -0.43
KLHL3-202ENST00000447439 BACH2Q9BYV9 841 aa12.39□□□□□ -0.43
KLHL3-202ENST00000447439 TET3O43151 1660 aa12.39□□□□□ -0.43
KLHL3-202ENST00000447439 INO80Q9ULG1 1556 aaPredicted RBP12.39□□□□□ -0.43
KLHL3-202ENST00000447439 NOS1P29475 1434 aa12.38□□□□□ -0.43
KLHL3-202ENST00000447439 ZNF521Q96K83 1311 aa12.38□□□□□ -0.43
KLHL3-202ENST00000447439 SLC12A5Q9H2X9 1139 aa12.38□□□□□ -0.43
KLHL3-202ENST00000447439 RRP7AQ9Y3A4 280 aaKnown RBP12.38□□□□□ -0.43
KLHL3-202ENST00000447439 MYOM1P52179 1685 aa12.38□□□□□ -0.43
KLHL3-202ENST00000447439 SYNMO15061 1565 aa12.38□□□□□ -0.43
KLHL3-202ENST00000447439 ABCA6Q8N139 1617 aa12.37□□□□□ -0.43
KLHL3-202ENST00000447439 MROH1Q8NDA8 1641 aa12.37□□□□□ -0.43
KLHL3-202ENST00000447439 SAFB2Q14151 953 aaKnown RBP eCLIP12.37□□□□□ -0.43
KLHL3-202ENST00000447439 SLFN5Q08AF3 891 aa12.37□□□□□ -0.43
KLHL3-202ENST00000447439 ABCA9Q8IUA7 1624 aa12.37□□□□□ -0.43
KLHL3-202ENST00000447439 KIAA1210Q9ULL0 1709 aa12.36□□□□□ -0.43
KLHL3-202ENST00000447439 VWDEQ8N2E2 1590 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 NEURL4Q96JN8 1562 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 MROH2AA6NES4 1674 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 RAPGEF3O95398 923 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 SLC4A3P48751 1232 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 RGS3P49796 1198 aa12.35□□□□□ -0.43
KLHL3-202ENST00000447439 CFAP65Q6ZU64 1925 aaKnown RBP12.35□□□□□ -0.43
KLHL3-202ENST00000447439 PHF23Q9BUL5 403 aaPredicted RBP12.34□□□□□ -0.43
KLHL3-202ENST00000447439 CENPJQ9HC77 1338 aaPredicted RBP12.34□□□□□ -0.43
KLHL3-202ENST00000447439 PIK3C2GO75747 1445 aa12.34□□□□□ -0.43
KLHL3-202ENST00000447439 MAP3K4Q9Y6R4 1608 aa12.34□□□□□ -0.43
KLHL3-202ENST00000447439 PPRC1Q5VV67 1664 aaKnown RBP12.34□□□□□ -0.43
KLHL3-202ENST00000447439 KDM2BQ8NHM5 1336 aa12.33□□□□□ -0.44
KLHL3-202ENST00000447439 KDM5AP29375 1690 aaKnown RBP12.33□□□□□ -0.44
KLHL3-202ENST00000447439 MORC1Q86VD1 984 aa12.33□□□□□ -0.44
KLHL3-202ENST00000447439 EFCAB6Q5THR3 1501 aa12.33□□□□□ -0.44
KLHL3-202ENST00000447439 NSD3Q9BZ95 1437 aa12.32□□□□□ -0.44
KLHL3-202ENST00000447439 NPM1P06748 294 aaKnown RBP eCLIP12.32□□□□□ -0.44
KLHL3-202ENST00000447439 STAC3Q96MF2 364 aa12.32□□□□□ -0.44
KLHL3-202ENST00000447439 KIDINS220Q9ULH0 1771 aa12.32□□□□□ -0.44
KLHL3-202ENST00000447439 NPATQ14207 1427 aa12.31□□□□□ -0.44
KLHL3-202ENST00000447439 MS4A1P11836 297 aa12.31□□□□□ -0.44
KLHL3-202ENST00000447439 STK26Q9P289 416 aa12.31□□□□□ -0.44
KLHL3-202ENST00000447439 MYOM2P54296 1465 aa12.31□□□□□ -0.44
KLHL3-202ENST00000447439 PANK1Q8TE04 598 aa12.3□□□□□ -0.44
KLHL3-202ENST00000447439 BCL2L13Q9BXK5 485 aa12.3□□□□□ -0.44
KLHL3-202ENST00000447439 TRMT2AQ8IZ69 625 aaKnown RBP12.3□□□□□ -0.44
KLHL3-202ENST00000447439 FRAT1Q92837 279 aaPredicted RBP12.3□□□□□ -0.44
KLHL3-202ENST00000447439 TNNQ9UQP3 1299 aa12.3□□□□□ -0.44
KLHL3-202ENST00000447439 CABP2Q9NPB3 220 aa12.29□□□□□ -0.44
KLHL3-202ENST00000447439 CD109Q6YHK3 1445 aa12.29□□□□□ -0.44
KLHL3-202ENST00000447439 WWC1Q8IX03 1113 aa12.29□□□□□ -0.44
KLHL3-202ENST00000447439 NPC1L1Q9UHC9 1359 aa12.29□□□□□ -0.44
KLHL3-202ENST00000447439 IFT172Q9UG01 1749 aa12.28□□□□□ -0.44
KLHL3-202ENST00000447439 IGHDP01880 384 aa12.28□□□□□ -0.44
KLHL3-202ENST00000447439 RTL5Q5HYW3 569 aaPredicted RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 CENPQQ7L2Z9 268 aaPredicted RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 C14orf93Q9H972 538 aaKnown RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 COG6Q9Y2V7 657 aa12.28□□□□□ -0.44
KLHL3-202ENST00000447439 ZNF518AQ6AHZ1 1483 aa12.28□□□□□ -0.44
KLHL3-202ENST00000447439 CANXP27824 592 aaKnown RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 MTHFSP49914 203 aa12.28□□□□□ -0.44
KLHL3-202ENST00000447439 NKTRP30414 1462 aaKnown RBP12.28□□□□□ -0.44
KLHL3-202ENST00000447439 KIF1BO60333 1816 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms