RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 SPATA31D1Q6ZQQ2 1576 aa12.06□□□□□ -0.48
VPS50-204ENST00000438395 ERBINQ96RT1 1412 aa12.06□□□□□ -0.48
VPS50-204ENST00000438395 RRP7BPQ9NSQ0 103 aa12.06□□□□□ -0.48
VPS50-204ENST00000438395 ERVK-7P63135 1459 aa12.06□□□□□ -0.48
VPS50-204ENST00000438395 POLR1AO95602 1720 aaPredicted RBP12.06□□□□□ -0.48
VPS50-204ENST00000438395 FGD6Q6ZV73 1430 aa12.05□□□□□ -0.48
VPS50-204ENST00000438395 TOM1O60784 492 aa12.05□□□□□ -0.48
VPS50-204ENST00000438395 CD44P16070 742 aaKnown RBP12.05□□□□□ -0.48
VPS50-204ENST00000438395 NEURL4Q96JN8 1562 aa12.05□□□□□ -0.48
VPS50-204ENST00000438395 ANKRD30AQ9BXX3 1397 aa12.05□□□□□ -0.48
VPS50-204ENST00000438395 PIP4K2BP78356 416 aa12.04□□□□□ -0.48
VPS50-204ENST00000438395 PTPN23Q9H3S7 1636 aa12.04□□□□□ -0.48
VPS50-204ENST00000438395 ABCC5O15440 1437 aa12.03□□□□□ -0.48
VPS50-204ENST00000438395 DAPK1P53355 1430 aa12.03□□□□□ -0.48
VPS50-204ENST00000438395 DEPDC5O75140 1603 aa12.02□□□□□ -0.49
VPS50-204ENST00000438395 MED14O60244 1454 aa12.02□□□□□ -0.49
VPS50-204ENST00000438395 PRDM15P57071 1507 aaPredicted RBP12.01□□□□□ -0.49
VPS50-204ENST00000438395 MROH1Q8NDA8 1641 aa12.01□□□□□ -0.49
VPS50-204ENST00000438395 FAM50AQ14320 339 aaKnown RBP12.01□□□□□ -0.49
VPS50-204ENST00000438395 CHIC2Q9UKJ5 165 aa12.01□□□□□ -0.49
VPS50-204ENST00000438395 EID1Q9Y6B2 187 aa12.01□□□□□ -0.49
VPS50-204ENST00000438395 MNX1P50219 401 aaPredicted RBP12□□□□□ -0.49
VPS50-204ENST00000438395 ARHGAP31Q2M1Z3 1444 aa12□□□□□ -0.49
VPS50-204ENST00000438395 SCAF11Q99590 1463 aaKnown RBP12□□□□□ -0.49
VPS50-204ENST00000438395 CROCC2H7BZ55 1655 aa12□□□□□ -0.49
VPS50-204ENST00000438395 IQGAP1P46940 1657 aa11.99□□□□□ -0.49
VPS50-204ENST00000438395 CEP152O94986 1710 aa11.99□□□□□ -0.49
VPS50-204ENST00000438395 VWDEQ8N2E2 1590 aa11.98□□□□□ -0.49
VPS50-204ENST00000438395 ILDR2Q71H61 639 aa11.98□□□□□ -0.49
VPS50-204ENST00000438395 TXNDC2Q86VQ3 553 aa11.98□□□□□ -0.49
VPS50-204ENST00000438395 SOCS7O14512 581 aa11.97□□□□□ -0.49
VPS50-204ENST00000438395 HSPA1LP34931 641 aa11.97□□□□□ -0.49
VPS50-204ENST00000438395 GABBR2O75899 941 aa11.95□□□□□ -0.5
VPS50-204ENST00000438395 TMEM2Q9UHN6 1383 aa11.94□□□□□ -0.5
VPS50-204ENST00000438395 SYNMO15061 1565 aa11.94□□□□□ -0.5
VPS50-204ENST00000438395 SLIT1O75093 1534 aa11.94□□□□□ -0.5
VPS50-204ENST00000438395 UBR1Q8IWV7 1749 aa11.94□□□□□ -0.5
VPS50-204ENST00000438395 EFCAB6Q5THR3 1501 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 LMTK2Q8IWU2 1503 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 BCANQ96GW7 911 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 ADGRL2O95490 1459 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 ARHGAP23Q9P227 1491 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 ANKRD50Q9ULJ7 1429 aa11.93□□□□□ -0.5
VPS50-204ENST00000438395 LRRC7Q96NW7 1537 aa11.92□□□□□ -0.5
VPS50-204ENST00000438395 LTKP29376 864 aa11.92□□□□□ -0.5
VPS50-204ENST00000438395 MIER1Q8N108 512 aa11.92□□□□□ -0.5
VPS50-204ENST00000438395 PIK3C2BO00750 1634 aa11.9□□□□□ -0.5
VPS50-204ENST00000438395 PPP1R15AO75807 674 aaPredicted RBP11.9□□□□□ -0.5
VPS50-204ENST00000438395 IDI1Q13907 227 aa11.9□□□□□ -0.5
VPS50-204ENST00000438395 SLC52A1Q9NWF4 448 aa11.9□□□□□ -0.5
VPS50-204ENST00000438395 CFAP65Q6ZU64 1925 aaKnown RBP11.9□□□□□ -0.51
VPS50-204ENST00000438395 RPRD2Q5VT52 1461 aaKnown RBP11.89□□□□□ -0.51
VPS50-204ENST00000438395 MED1Q15648 1581 aaPredicted RBP11.88□□□□□ -0.51
VPS50-204ENST00000438395 NOS1P29475 1434 aa11.88□□□□□ -0.51
VPS50-204ENST00000438395 ADGRB3O60242 1522 aa11.88□□□□□ -0.51
VPS50-204ENST00000438395 HDGFP51858 240 aaKnown RBP11.88□□□□□ -0.51
VPS50-204ENST00000438395 SLC26A8Q96RN1 970 aa11.87□□□□□ -0.51
VPS50-204ENST00000438395 CHGAP10645 457 aaKnown RBP11.86□□□□□ -0.51
VPS50-204ENST00000438395 PROSER2Q86WR7 435 aaPredicted RBP11.86□□□□□ -0.51
VPS50-204ENST00000438395 KDM5AP29375 1690 aaKnown RBP11.86□□□□□ -0.51
VPS50-204ENST00000438395 TMEM94Q12767 1356 aa11.85□□□□□ -0.51
VPS50-204ENST00000438395 KCNA6P17658 529 aa11.85□□□□□ -0.51
VPS50-204ENST00000438395 ITGAEP38570 1179 aa11.85□□□□□ -0.51
VPS50-204ENST00000438395 ROCK1Q13464 1354 aa11.84□□□□□ -0.51
VPS50-204ENST00000438395 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
VPS50-204ENST00000438395 STRCP1A6NGW2 1772 aa11.84□□□□□ -0.51
VPS50-204ENST00000438395 NKTRP30414 1462 aaKnown RBP11.83□□□□□ -0.52
VPS50-204ENST00000438395 ALKQ9UM73 1620 aa11.83□□□□□ -0.52
VPS50-204ENST00000438395 ZNF579Q8NAF0 562 aaKnown RBP11.83□□□□□ -0.52
VPS50-204ENST00000438395 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS50-204ENST00000438395 PHF12Q96QT6 1004 aa11.83□□□□□ -0.52
VPS50-204ENST00000438395 TET3O43151 1660 aa11.83□□□□□ -0.52
VPS50-204ENST00000438395 MSH6P52701 1360 aa11.82□□□□□ -0.52
VPS50-204ENST00000438395 C14orf37Q86TY3 774 aa11.82□□□□□ -0.52
VPS50-204ENST00000438395 RIMS2Q9UQ26 1411 aa11.82□□□□□ -0.52
VPS50-204ENST00000438395 NUP155O75694 1391 aa11.81□□□□□ -0.52
VPS50-204ENST00000438395 PLEKHG1Q9ULL1 1385 aa11.81□□□□□ -0.52
VPS50-204ENST00000438395 UNC13BO14795 1591 aa11.8□□□□□ -0.52
VPS50-204ENST00000438395 TSPYL2Q9H2G4 693 aaPredicted RBP11.8□□□□□ -0.52
VPS50-204ENST00000438395 ZFYVE9O95405 1425 aa11.79□□□□□ -0.52
VPS50-204ENST00000438395 FAM135BQ49AJ0 1406 aa11.79□□□□□ -0.52
VPS50-204ENST00000438395 PAK3O75914 559 aaPredicted RBP11.79□□□□□ -0.52
VPS50-204ENST00000438395 RBM33Q96EV2 1170 aaKnown RBP11.79□□□□□ -0.52
VPS50-204ENST00000438395 GCC2Q8IWJ2 1684 aa11.78□□□□□ -0.52
VPS50-204ENST00000438395 PLEKHG5O94827 1062 aa11.78□□□□□ -0.52
VPS50-204ENST00000438395 PPARGC1BQ86YN6 1023 aaKnown RBP11.78□□□□□ -0.52
VPS50-204ENST00000438395 NWD1Q149M9 1564 aa11.77□□□□□ -0.53
VPS50-204ENST00000438395 GALR2O43603 387 aaPredicted RBP11.76□□□□□ -0.53
VPS50-204ENST00000438395 NUTM2DQ5VT03 806 aaPredicted RBP11.76□□□□□ -0.53
VPS50-204ENST00000438395 TBX22Q9Y458 520 aa11.76□□□□□ -0.53
VPS50-204ENST00000438395 TMEM131LA2VDJ0 1609 aa11.75□□□□□ -0.53
VPS50-204ENST00000438395 IQGAP3Q86VI3 1631 aa11.75□□□□□ -0.53
VPS50-204ENST00000438395 POTEIP0CG38 1075 aa11.75□□□□□ -0.53
VPS50-204ENST00000438395 SLAIN2Q9P270 581 aa11.75□□□□□ -0.53
VPS50-204ENST00000438395 ATF3P18847 181 aa11.74□□□□□ -0.53
VPS50-204ENST00000438395 ZNF326Q5BKZ1 582 aaKnown RBP11.74□□□□□ -0.53
VPS50-204ENST00000438395 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
VPS50-204ENST00000438395 DIP2AQ14689 1571 aa11.74□□□□□ -0.53
VPS50-204ENST00000438395 E9PCH4 1651 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms