RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GBP2P32456 591 aaPredicted RBP8.7□□□□□ -1.02
VPS53-204ENST00000437048 PDCL3Q9H2J4 239 aa8.7□□□□□ -1.02
VPS53-204ENST00000437048 CARMIL2Q6F5E8 1435 aa8.69□□□□□ -1.02
VPS53-204ENST00000437048 TPD52L1Q16890 204 aaPredicted RBP8.69□□□□□ -1.02
VPS53-204ENST00000437048 GOLGA6L10A6NI86 522 aa8.69□□□□□ -1.02
VPS53-204ENST00000437048 SMC4Q9NTJ3 1288 aa8.69□□□□□ -1.02
VPS53-204ENST00000437048 FEZ1Q99689 392 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 SMARCE1Q969G3 411 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 FBLN2P98095 1184 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 JMYQ8N9B5 988 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 NEMFO60524 1076 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 NF2P35240 595 aa8.68□□□□□ -1.02
VPS53-204ENST00000437048 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.68□□□□□ -1.02
VPS53-204ENST00000437048 TULP1O00294 542 aaPredicted RBP8.67□□□□□ -1.02
VPS53-204ENST00000437048 SASS6Q6UVJ0 657 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 HOMER1Q86YM7 354 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 AEBP1Q8IUX7 1158 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 MFAP1P55081 439 aaKnown RBP8.67□□□□□ -1.02
VPS53-204ENST00000437048 AEBP2Q6ZN18 517 aaPredicted RBP8.67□□□□□ -1.02
VPS53-204ENST00000437048 H3BQV1 296 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 IFFO2Q5TF58 517 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 POGKQ9P215 609 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 TUBBP07437 444 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 ZNF428Q96B54 188 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 GZF1Q9H116 711 aaPredicted RBP8.67□□□□□ -1.02
VPS53-204ENST00000437048 SH3BGRP55822 239 aaPredicted RBP8.67□□□□□ -1.02
VPS53-204ENST00000437048 LUZP1Q86V48 1076 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 CCDC73Q6ZRK6 1079 aa8.67□□□□□ -1.02
VPS53-204ENST00000437048 HIP1O00291 1037 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 POTEB2H3BUK9 544 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 KIF3BO15066 747 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 ABCC8Q09428 1581 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 PLEKHH1Q9ULM0 1364 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 AKNAQ7Z591 1439 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS53-204ENST00000437048 FOXD4L1Q9NU39 408 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 INTS3Q68E01 1043 aaKnown RBP8.66□□□□□ -1.02
VPS53-204ENST00000437048 ITPRIPQ8IWB1 547 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 BRD4O60885 1362 aaPredicted RBP8.66□□□□□ -1.02
VPS53-204ENST00000437048 MAP9Q49MG5 647 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 ZKSCAN2Q63HK3 967 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 FAM13BQ9NYF5 915 aa8.66□□□□□ -1.02
VPS53-204ENST00000437048 DACH1Q9UI36 760 aa8.65□□□□□ -1.02
VPS53-204ENST00000437048 DYDC1Q8WWB3 177 aa8.65□□□□□ -1.02
VPS53-204ENST00000437048 A6NNZ2 444 aa8.65□□□□□ -1.02
VPS53-204ENST00000437048 PSMA5P28066 241 aa8.65□□□□□ -1.02
VPS53-204ENST00000437048 TUBB8Q3ZCM7 444 aa8.65□□□□□ -1.02
VPS53-204ENST00000437048 DHX16O60231 1041 aaKnown RBP8.65□□□□□ -1.02
VPS53-204ENST00000437048 EZRP15311 586 aaKnown RBP8.65□□□□□ -1.02
VPS53-204ENST00000437048 RRP1P56182 461 aaKnown RBP8.65□□□□□ -1.02
VPS53-204ENST00000437048 TRIM29Q14134 588 aa8.65□□□□□ -1.03
VPS53-204ENST00000437048 MICALCLQ6ZW33 695 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 API5Q9BZZ5 524 aaKnown RBP8.64□□□□□ -1.03
VPS53-204ENST00000437048 ATAD2Q6PL18 1390 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 GOLGA6L9A6NEM1 432 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 OLFM4Q6UX06 510 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 SYNE3Q6ZMZ3 975 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 RASSF8Q8NHQ8 419 aa8.64□□□□□ -1.03
VPS53-204ENST00000437048 AKAP17AQ02040 695 aaKnown RBP8.64□□□□□ -1.03
VPS53-204ENST00000437048 RAB3GAP2Q9H2M9 1393 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 CHMP7Q8WUX9 453 aaPredicted RBP8.63□□□□□ -1.03
VPS53-204ENST00000437048 PODXL2Q9NZ53 605 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 XBP1P17861 261 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 ANKRD1Q15327 319 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS53-204ENST00000437048 CBFA2T2O43439 604 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 POLA1P09884 1462 aaPredicted RBP8.63□□□□□ -1.03
VPS53-204ENST00000437048 SAFBQ15424 915 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS53-204ENST00000437048 HS1BP3Q53T59 392 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 DDX12PQ92771 950 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 KAT6BQ8WYB5 2073 aa8.63□□□□□ -1.03
VPS53-204ENST00000437048 HMGB2P26583 209 aaKnown RBP8.62□□□□□ -1.03
VPS53-204ENST00000437048 SPATA24Q86W54 205 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 ZSCAN30Q86W11 494 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 ERC2O15083 957 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 NEUROD2Q15784 382 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 TTLL5Q6EMB2 1281 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 HMGB3O15347 200 aaKnown RBP8.62□□□□□ -1.03
VPS53-204ENST00000437048 SSR1P43307 286 aaKnown RBP8.62□□□□□ -1.03
VPS53-204ENST00000437048 NOL10Q9BSC4 688 aaKnown RBP8.62□□□□□ -1.03
VPS53-204ENST00000437048 IFT57Q9NWB7 429 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 SKAP1Q86WV1 359 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 RRP7BPQ9NSQ0 103 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 FOXD1Q16676 465 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 FILIP1LQ4L180 1135 aa8.62□□□□□ -1.03
VPS53-204ENST00000437048 SETSIPP0DME0 302 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 CCDC192P0DO97 292 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 TOP2AP11388 1531 aaKnown RBP8.61□□□□□ -1.03
VPS53-204ENST00000437048 DYNC1I1O14576 645 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 AMOTL1Q8IY63 956 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 FAM193AP78312 1265 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 TMX4Q9H1E5 349 aaPredicted RBP8.61□□□□□ -1.03
VPS53-204ENST00000437048 CCDC112Q8NEF3 446 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 KINO60870 393 aaKnown RBP8.61□□□□□ -1.03
VPS53-204ENST00000437048 PRIMPOLQ96LW4 560 aa8.61□□□□□ -1.03
VPS53-204ENST00000437048 IVLP07476 585 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 CCDC83Q8IWF9 413 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 BRMS1Q9HCU9 246 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 TXLNAP40222 546 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 MAPK8IP2Q13387 824 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms