RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 BLMP54132 1417 aaPredicted RBP13.92□□□□□ -0.18
CD44-210ENST00000434472 CC2D1BQ5T0F9 858 aaKnown RBP13.91□□□□□ -0.18
CD44-210ENST00000434472 KNSTRNQ9Y448 316 aa13.91□□□□□ -0.18
CD44-210ENST00000434472 EFCAB6Q5THR3 1501 aa13.91□□□□□ -0.18
CD44-210ENST00000434472 NPC1L1Q9UHC9 1359 aa13.9□□□□□ -0.18
CD44-210ENST00000434472 CCDC136Q96JN2 1154 aa13.9□□□□□ -0.19
CD44-210ENST00000434472 MAP3K4Q9Y6R4 1608 aa13.89□□□□□ -0.19
CD44-210ENST00000434472 KIDINS220Q9ULH0 1771 aa13.89□□□□□ -0.19
CD44-210ENST00000434472 KIF1BO60333 1816 aa13.88□□□□□ -0.19
CD44-210ENST00000434472 RRP1P56182 461 aaKnown RBP13.88□□□□□ -0.19
CD44-210ENST00000434472 RCAN3Q9UKA8 241 aa13.88□□□□□ -0.19
CD44-210ENST00000434472 ASXL1Q8IXJ9 1541 aa13.87□□□□□ -0.19
CD44-210ENST00000434472 OSCARQ8IYS5 282 aa13.86□□□□□ -0.19
CD44-210ENST00000434472 MLH3Q9UHC1 1453 aa13.86□□□□□ -0.19
CD44-210ENST00000434472 KDM5AP29375 1690 aaKnown RBP13.86□□□□□ -0.19
CD44-210ENST00000434472 CD109Q6YHK3 1445 aa13.85□□□□□ -0.19
CD44-210ENST00000434472 POGZQ7Z3K3 1410 aa13.85□□□□□ -0.19
CD44-210ENST00000434472 NRXN1Q9ULB1 1477 aa13.85□□□□□ -0.19
CD44-210ENST00000434472 IFT172Q9UG01 1749 aa13.85□□□□□ -0.19
CD44-210ENST00000434472 ABCA6Q8N139 1617 aa13.85□□□□□ -0.19
CD44-210ENST00000434472 PPRC1Q5VV67 1664 aaKnown RBP13.84□□□□□ -0.19
CD44-210ENST00000434472 PIK3C2GO75747 1445 aa13.84□□□□□ -0.19
CD44-210ENST00000434472 PPP2R1AP30153 589 aa13.84□□□□□ -0.19
CD44-210ENST00000434472 AMER1Q5JTC6 1135 aaPredicted RBP13.84□□□□□ -0.19
CD44-210ENST00000434472 WDR43Q15061 677 aaKnown RBP eCLIP13.83□□□□□ -0.2
CD44-210ENST00000434472 SBNO2Q9Y2G9 1366 aa13.83□□□□□ -0.2
CD44-210ENST00000434472 ADGRB3O60242 1522 aa13.82□□□□□ -0.2
CD44-210ENST00000434472 SETBP1Q9Y6X0 1596 aa13.82□□□□□ -0.2
CD44-210ENST00000434472 MYO3AQ8NEV4 1616 aa13.82□□□□□ -0.2
CD44-210ENST00000434472 RPGRIP1LQ68CZ1 1315 aa13.82□□□□□ -0.2
CD44-210ENST00000434472 HECW2Q9P2P5 1572 aa13.81□□□□□ -0.2
CD44-210ENST00000434472 MYOM1P52179 1685 aa13.81□□□□□ -0.2
CD44-210ENST00000434472 CFAP70Q5T0N1 1121 aa13.81□□□□□ -0.2
CD44-210ENST00000434472 ADGRF5Q8IZF2 1346 aa13.81□□□□□ -0.2
CD44-210ENST00000434472 UGGT1Q9NYU2 1555 aa13.8□□□□□ -0.2
CD44-210ENST00000434472 NEO1Q92859 1461 aa13.8□□□□□ -0.2
CD44-210ENST00000434472 MROH2AA6NES4 1674 aa13.8□□□□□ -0.2
CD44-210ENST00000434472 ERVK-7P63135 1459 aa13.8□□□□□ -0.2
CD44-210ENST00000434472 SENP3-EIF4A1A0A087X0R7 540 aa13.79□□□□□ -0.2
CD44-210ENST00000434472 ERICH6Q7L0X2 663 aa13.79□□□□□ -0.2
CD44-210ENST00000434472 SALL2Q9Y467 1007 aaPredicted RBP13.79□□□□□ -0.2
CD44-210ENST00000434472 ADAMTS8Q9UP79 889 aa13.79□□□□□ -0.2
CD44-210ENST00000434472 FRMPD1Q5SYB0 1578 aa13.78□□□□□ -0.2
CD44-210ENST00000434472 NOS1P29475 1434 aa13.77□□□□□ -0.2
CD44-210ENST00000434472 NGEFQ8N5V2 710 aa13.77□□□□□ -0.21
CD44-210ENST00000434472 CDCA7LQ96GN5 454 aa13.77□□□□□ -0.21
CD44-210ENST00000434472 NPATQ14207 1427 aa13.77□□□□□ -0.21
CD44-210ENST00000434472 MSH5O43196 834 aa13.76□□□□□ -0.21
CD44-210ENST00000434472 EXOC6Q8TAG9 804 aa13.76□□□□□ -0.21
CD44-210ENST00000434472 CENPJQ9HC77 1338 aaPredicted RBP13.76□□□□□ -0.21
CD44-210ENST00000434472 ABCC3O15438 1527 aa13.76□□□□□ -0.21
CD44-210ENST00000434472 PPLO60437 1756 aa13.75□□□□□ -0.21
CD44-210ENST00000434472 C14orf93Q9H972 538 aaKnown RBP13.75□□□□□ -0.21
CD44-210ENST00000434472 TCERG1O14776 1098 aaKnown RBP13.74□□□□□ -0.21
CD44-210ENST00000434472 CHGAP10645 457 aaKnown RBP13.74□□□□□ -0.21
CD44-210ENST00000434472 GGT6Q6P531 493 aa13.74□□□□□ -0.21
CD44-210ENST00000434472 GOLGA2Q08379 1002 aa13.73□□□□□ -0.21
CD44-210ENST00000434472 PUS7Q96PZ0 661 aaKnown RBP13.73□□□□□ -0.21
CD44-210ENST00000434472 ZNF521Q96K83 1311 aa13.73□□□□□ -0.21
CD44-210ENST00000434472 ARHGAP31Q2M1Z3 1444 aa13.72□□□□□ -0.21
CD44-210ENST00000434472 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.72□□□□□ -0.21
CD44-210ENST00000434472 CAMSAP1Q5T5Y3 1602 aa13.72□□□□□ -0.21
CD44-210ENST00000434472 PLEKHH1Q9ULM0 1364 aa13.71□□□□□ -0.22
CD44-210ENST00000434472 ZC3H13Q5T200 1668 aaKnown RBP13.71□□□□□ -0.22
CD44-210ENST00000434472 ADGRB1O14514 1584 aa13.7□□□□□ -0.22
CD44-210ENST00000434472 VGFO15240 615 aaPredicted RBP13.7□□□□□ -0.22
CD44-210ENST00000434472 MS4A1P11836 297 aa13.7□□□□□ -0.22
CD44-210ENST00000434472 DIP2CQ9Y2E4 1556 aa13.69□□□□□ -0.22
CD44-210ENST00000434472 POLR3AO14802 1390 aaPredicted RBP13.69□□□□□ -0.22
CD44-210ENST00000434472 DUSP27Q5VZP5 1158 aa13.69□□□□□ -0.22
CD44-210ENST00000434472 CARD14Q9BXL6 1004 aa13.69□□□□□ -0.22
CD44-210ENST00000434472 PIK3C2BO00750 1634 aa13.69□□□□□ -0.22
CD44-210ENST00000434472 QRICH2Q9H0J4 1663 aa13.69□□□□□ -0.22
CD44-210ENST00000434472 ANP32AP39687 249 aaKnown RBP13.68□□□□□ -0.22
CD44-210ENST00000434472 SLFN5Q08AF3 891 aa13.68□□□□□ -0.22
CD44-210ENST00000434472 USP32Q8NFA0 1604 aa13.67□□□□□ -0.22
CD44-210ENST00000434472 ZFYVE9O95405 1425 aa13.67□□□□□ -0.22
CD44-210ENST00000434472 TRMT2AQ8IZ69 625 aaKnown RBP13.67□□□□□ -0.22
CD44-210ENST00000434472 CRBNQ96SW2 442 aa13.67□□□□□ -0.22
CD44-210ENST00000434472 TRAK1Q9UPV9 953 aa13.67□□□□□ -0.22
CD44-210ENST00000434472 NSD3Q9BZ95 1437 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 E9PSI1 815 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 MORC1Q86VD1 984 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 SLC52A1Q9NWF4 448 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 NEXMIFQ5QGS0 1516 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 EVC2Q86UK5 1308 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 GLI2P10070 1586 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 RICTORQ6R327 1708 aa13.65□□□□□ -0.22
CD44-210ENST00000434472 PLIN1O60240 522 aa13.64□□□□□ -0.23
CD44-210ENST00000434472 NOP58Q9Y2X3 529 aaKnown RBP13.64□□□□□ -0.23
CD44-210ENST00000434472 NSD2O96028 1365 aa13.64□□□□□ -0.23
CD44-210ENST00000434472 RAPGEF3O95398 923 aa13.64□□□□□ -0.23
CD44-210ENST00000434472 NKTRP30414 1462 aaKnown RBP13.63□□□□□ -0.23
CD44-210ENST00000434472 APAF1O14727 1248 aa13.63□□□□□ -0.23
CD44-210ENST00000434472 IPO9Q96P70 1041 aaKnown RBP13.63□□□□□ -0.23
CD44-210ENST00000434472 SIGLEC1Q9BZZ2 1709 aa13.63□□□□□ -0.23
CD44-210ENST00000434472 CCDC146Q8IYE0 955 aa13.62□□□□□ -0.23
CD44-210ENST00000434472 CGNL1Q0VF96 1302 aa13.62□□□□□ -0.23
CD44-210ENST00000434472 NINLQ9Y2I6 1382 aa13.62□□□□□ -0.23
CD44-210ENST00000434472 NCBP3Q53F19 620 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms