RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 MYOM1P52179 1685 aa18.21■□□□□ 0.51
COL6A3-207ENST00000433762 IFT172Q9UG01 1749 aa18.21■□□□□ 0.5
COL6A3-207ENST00000433762 PANK3Q9H999 370 aa18.2■□□□□ 0.5
COL6A3-207ENST00000433762 KDM5AP29375 1690 aaKnown RBP18.2■□□□□ 0.5
COL6A3-207ENST00000433762 MROH1Q8NDA8 1641 aa18.19■□□□□ 0.5
COL6A3-207ENST00000433762 KIF1BO60333 1816 aa18.19■□□□□ 0.5
COL6A3-207ENST00000433762 PIK3C2GO75747 1445 aa18.19■□□□□ 0.5
COL6A3-207ENST00000433762 ASXL1Q8IXJ9 1541 aa18.18■□□□□ 0.5
COL6A3-207ENST00000433762 MAP3K4Q9Y6R4 1608 aa18.18■□□□□ 0.5
COL6A3-207ENST00000433762 LMTK2Q8IWU2 1503 aa18.18■□□□□ 0.5
COL6A3-207ENST00000433762 CNGB1Q14028 1251 aaPredicted RBP18.18■□□□□ 0.5
COL6A3-207ENST00000433762 FANCAO15360 1455 aa18.18■□□□□ 0.5
COL6A3-207ENST00000433762 MYO3AQ8NEV4 1616 aa18.17■□□□□ 0.5
COL6A3-207ENST00000433762 ASXL2Q76L83 1435 aa18.16■□□□□ 0.5
COL6A3-207ENST00000433762 EFCAB6Q5THR3 1501 aa18.15■□□□□ 0.5
COL6A3-207ENST00000433762 NRXN1Q9ULB1 1477 aa18.13■□□□□ 0.49
COL6A3-207ENST00000433762 TCERG1O14776 1098 aaKnown RBP18.13■□□□□ 0.49
COL6A3-207ENST00000433762 CFAP74Q9C0B2 1584 aa18.12■□□□□ 0.49
COL6A3-207ENST00000433762 ABCA6Q8N139 1617 aa18.12■□□□□ 0.49
COL6A3-207ENST00000433762 SBNO2Q9Y2G9 1366 aa18.12■□□□□ 0.49
COL6A3-207ENST00000433762 SETBP1Q9Y6X0 1596 aa18.12■□□□□ 0.49
COL6A3-207ENST00000433762 ADGRL1O94910 1474 aa18.12■□□□□ 0.49
COL6A3-207ENST00000433762 MS4A1P11836 297 aa18.11■□□□□ 0.49
COL6A3-207ENST00000433762 CC2D1BQ5T0F9 858 aaKnown RBP18.11■□□□□ 0.49
COL6A3-207ENST00000433762 KNSTRNQ9Y448 316 aa18.11■□□□□ 0.49
COL6A3-207ENST00000433762 AMER1Q5JTC6 1135 aaPredicted RBP18.1■□□□□ 0.49
COL6A3-207ENST00000433762 KIDINS220Q9ULH0 1771 aa18.1■□□□□ 0.49
COL6A3-207ENST00000433762 NOP58Q9Y2X3 529 aaKnown RBP18.09■□□□□ 0.49
COL6A3-207ENST00000433762 ANP32AP39687 249 aaKnown RBP18.09■□□□□ 0.49
COL6A3-207ENST00000433762 AFAP1Q8N556 730 aa18.09■□□□□ 0.49
COL6A3-207ENST00000433762 NGEFQ8N5V2 710 aa18.08■□□□□ 0.48
COL6A3-207ENST00000433762 PPP2R1AP30153 589 aa18.08■□□□□ 0.48
COL6A3-207ENST00000433762 PPRC1Q5VV67 1664 aaKnown RBP18.07■□□□□ 0.48
COL6A3-207ENST00000433762 EXOC6Q8TAG9 804 aa18.06■□□□□ 0.48
COL6A3-207ENST00000433762 ADGRB3O60242 1522 aa18.06■□□□□ 0.48
COL6A3-207ENST00000433762 ZNF518AQ6AHZ1 1483 aa18.06■□□□□ 0.48
COL6A3-207ENST00000433762 ZNF521Q96K83 1311 aa18.05■□□□□ 0.48
COL6A3-207ENST00000433762 IPO9Q96P70 1041 aaKnown RBP18.05■□□□□ 0.48
COL6A3-207ENST00000433762 MROH2AA6NES4 1674 aa18.05■□□□□ 0.48
COL6A3-207ENST00000433762 ERVK-7P63135 1459 aa18.04■□□□□ 0.48
COL6A3-207ENST00000433762 ZC3H13Q5T200 1668 aaKnown RBP18.03■□□□□ 0.48
COL6A3-207ENST00000433762 WDR43Q15061 677 aaKnown RBP eCLIP18.03■□□□□ 0.48
COL6A3-207ENST00000433762 CDCA7LQ96GN5 454 aa18.03■□□□□ 0.48
COL6A3-207ENST00000433762 PPLO60437 1756 aa18.02■□□□□ 0.48
COL6A3-207ENST00000433762 ADAMTS8Q9UP79 889 aa18.02■□□□□ 0.47
COL6A3-207ENST00000433762 USP32Q8NFA0 1604 aa18.01■□□□□ 0.47
COL6A3-207ENST00000433762 KIF3BO15066 747 aa17.99■□□□□ 0.47
COL6A3-207ENST00000433762 MLH3Q9UHC1 1453 aa17.99■□□□□ 0.47
COL6A3-207ENST00000433762 PLEKHH1Q9ULM0 1364 aa17.99■□□□□ 0.47
COL6A3-207ENST00000433762 HECW2Q9P2P5 1572 aa17.97■□□□□ 0.47
COL6A3-207ENST00000433762 DUSP27Q5VZP5 1158 aa17.97■□□□□ 0.47
COL6A3-207ENST00000433762 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
COL6A3-207ENST00000433762 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.97■□□□□ 0.47
COL6A3-207ENST00000433762 TRMT2AQ8IZ69 625 aaKnown RBP17.96■□□□□ 0.47
COL6A3-207ENST00000433762 UGGT1Q9NYU2 1555 aa17.96■□□□□ 0.47
COL6A3-207ENST00000433762 SALL2Q9Y467 1007 aaPredicted RBP17.96■□□□□ 0.47
COL6A3-207ENST00000433762 BACH2Q9BYV9 841 aa17.95■□□□□ 0.46
COL6A3-207ENST00000433762 POGZQ7Z3K3 1410 aa17.95■□□□□ 0.46
COL6A3-207ENST00000433762 SENP3-EIF4A1A0A087X0R7 540 aa17.94■□□□□ 0.46
COL6A3-207ENST00000433762 RPGRIP1LQ68CZ1 1315 aa17.94■□□□□ 0.46
COL6A3-207ENST00000433762 POLR3AO14802 1390 aaPredicted RBP17.94■□□□□ 0.46
COL6A3-207ENST00000433762 CD109Q6YHK3 1445 aa17.94■□□□□ 0.46
COL6A3-207ENST00000433762 ZBTB47Q9UFB7 747 aaPredicted RBP17.94■□□□□ 0.46
COL6A3-207ENST00000433762 FRMPD1Q5SYB0 1578 aa17.94■□□□□ 0.46
COL6A3-207ENST00000433762 QRICH2Q9H0J4 1663 aa17.94■□□□□ 0.46
COL6A3-207ENST00000433762 PDE4AP27815 886 aa17.93■□□□□ 0.46
COL6A3-207ENST00000433762 ADGRB1O14514 1584 aa17.93■□□□□ 0.46
COL6A3-207ENST00000433762 SLFN5Q08AF3 891 aa17.93■□□□□ 0.46
COL6A3-207ENST00000433762 PUS7Q96PZ0 661 aaKnown RBP17.93■□□□□ 0.46
COL6A3-207ENST00000433762 CRBNQ96SW2 442 aa17.93■□□□□ 0.46
COL6A3-207ENST00000433762 NKTRP30414 1462 aaKnown RBP17.92■□□□□ 0.46
COL6A3-207ENST00000433762 KDM2BQ8NHM5 1336 aa17.92■□□□□ 0.46
COL6A3-207ENST00000433762 DNAJC5Q9H3Z4 198 aa17.92■□□□□ 0.46
COL6A3-207ENST00000433762 NINLQ9Y2I6 1382 aa17.92■□□□□ 0.46
COL6A3-207ENST00000433762 PIK3C2BO00750 1634 aa17.91■□□□□ 0.46
COL6A3-207ENST00000433762 ADGRF5Q8IZF2 1346 aa17.91■□□□□ 0.46
COL6A3-207ENST00000433762 CENPQQ7L2Z9 268 aaPredicted RBP17.91■□□□□ 0.46
COL6A3-207ENST00000433762 FAM69CQ0P6D2 419 aa17.9■□□□□ 0.46
COL6A3-207ENST00000433762 CFAP70Q5T0N1 1121 aa17.9■□□□□ 0.46
COL6A3-207ENST00000433762 CAMSAP1Q5T5Y3 1602 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 NPATQ14207 1427 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 GLI2P10070 1586 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 SHPRHQ149N8 1683 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 PAK3O75914 559 aaPredicted RBP17.89■□□□□ 0.45
COL6A3-207ENST00000433762 NOS1P29475 1434 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 ABCC3O15438 1527 aa17.89■□□□□ 0.45
COL6A3-207ENST00000433762 CENPJQ9HC77 1338 aaPredicted RBP17.88■□□□□ 0.45
COL6A3-207ENST00000433762 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
COL6A3-207ENST00000433762 DIP2BQ9P265 1576 aa17.88■□□□□ 0.45
COL6A3-207ENST00000433762 E9PSI1 815 aa17.88■□□□□ 0.45
COL6A3-207ENST00000433762 NEO1Q92859 1461 aa17.88■□□□□ 0.45
COL6A3-207ENST00000433762 C14orf93Q9H972 538 aaKnown RBP17.87■□□□□ 0.45
COL6A3-207ENST00000433762 PLIN1O60240 522 aa17.86■□□□□ 0.45
COL6A3-207ENST00000433762 DDRGK1Q96HY6 314 aa17.84■□□□□ 0.45
COL6A3-207ENST00000433762 ARHGAP31Q2M1Z3 1444 aa17.84■□□□□ 0.45
COL6A3-207ENST00000433762 ARHGEF28Q8N1W1 1705 aaKnown RBP17.84■□□□□ 0.45
COL6A3-207ENST00000433762 CARD14Q9BXL6 1004 aa17.84■□□□□ 0.45
COL6A3-207ENST00000433762 NSD2O96028 1365 aa17.84■□□□□ 0.45
COL6A3-207ENST00000433762 VIRMAQ69YN4 1812 aaKnown RBP17.83■□□□□ 0.44
COL6A3-207ENST00000433762 ZFYVE9O95405 1425 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms