RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ADGRF5Q8IZF2 1346 aa11.16□□□□□ -0.62
USP40-203ENST00000427112 PRAG1Q86YV5 1406 aa11.16□□□□□ -0.62
USP40-203ENST00000427112 CENPQQ7L2Z9 268 aaPredicted RBP11.16□□□□□ -0.62
USP40-203ENST00000427112 IFT140Q96RY7 1462 aa11.15□□□□□ -0.62
USP40-203ENST00000427112 MBD5Q9P267 1494 aa11.15□□□□□ -0.62
USP40-203ENST00000427112 TPRNQ4KMQ1 711 aa11.15□□□□□ -0.62
USP40-203ENST00000427112 SLFN5Q08AF3 891 aa11.15□□□□□ -0.62
USP40-203ENST00000427112 ARHGAP5Q13017 1502 aa11.15□□□□□ -0.63
USP40-203ENST00000427112 A2MP01023 1474 aa11.14□□□□□ -0.63
USP40-203ENST00000427112 SPAG9O60271 1321 aaKnown RBP11.14□□□□□ -0.63
USP40-203ENST00000427112 CENPJQ9HC77 1338 aaPredicted RBP11.14□□□□□ -0.63
USP40-203ENST00000427112 PLEKHG5O94827 1062 aa11.14□□□□□ -0.63
USP40-203ENST00000427112 MS4A1P11836 297 aa11.14□□□□□ -0.63
USP40-203ENST00000427112 APBB1O00213 710 aa11.13□□□□□ -0.63
USP40-203ENST00000427112 TCP11L2Q8N4U5 519 aa11.13□□□□□ -0.63
USP40-203ENST00000427112 MTHFSP49914 203 aa11.13□□□□□ -0.63
USP40-203ENST00000427112 CABP2Q9NPB3 220 aa11.13□□□□□ -0.63
USP40-203ENST00000427112 MAGI2Q86UL8 1455 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 SOX12O15370 315 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 PCDHB15Q9Y5E8 787 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 PLA2R1Q13018 1463 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 OSCARQ8IYS5 282 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 FAM135AQ9P2D6 1515 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 GGNBP2Q9H3C7 697 aa11.12□□□□□ -0.63
USP40-203ENST00000427112 SYCP2Q9BX26 1530 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 ZBTB7CA1YPR0 619 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 CFAP65Q6ZU64 1925 aaKnown RBP11.11□□□□□ -0.63
USP40-203ENST00000427112 A0A0U1RQG5 324 aaPredicted RBP11.11□□□□□ -0.63
USP40-203ENST00000427112 FTSJ3Q8IY81 847 aaKnown RBP11.11□□□□□ -0.63
USP40-203ENST00000427112 CEP170Q5SW79 1584 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 RIMBP3CA6NJZ7 1639 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 RIMBP3BA6NNM3 1639 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 RIMBP3Q9UFD9 1639 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 C1orf115Q9H7X2 142 aa11.11□□□□□ -0.63
USP40-203ENST00000427112 EFCAB2Q5VUJ9 269 aa11.1□□□□□ -0.63
USP40-203ENST00000427112 ITPRIPQ8IWB1 547 aa11.1□□□□□ -0.63
USP40-203ENST00000427112 WWC1Q8IX03 1113 aa11.1□□□□□ -0.63
USP40-203ENST00000427112 KDM2BQ8NHM5 1336 aa11.1□□□□□ -0.63
USP40-203ENST00000427112 PDZRN3Q9UPQ7 1066 aa11.1□□□□□ -0.63
USP40-203ENST00000427112 THUMPD2Q9BTF0 503 aaKnown RBP11.09□□□□□ -0.63
USP40-203ENST00000427112 EIF4G3O43432 1585 aaKnown RBP11.09□□□□□ -0.63
USP40-203ENST00000427112 NUTM2FA1L443 756 aa11.09□□□□□ -0.63
USP40-203ENST00000427112 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.09□□□□□ -0.632e-6■■■□□ 17.2
USP40-203ENST00000427112 SRPK2P78362 688 aaKnown RBP11.08□□□□□ -0.64
USP40-203ENST00000427112 UHRF1BP1Q6BDS2 1440 aa11.08□□□□□ -0.64
USP40-203ENST00000427112 VSIG10Q8N0Z9 540 aa11.07□□□□□ -0.64
USP40-203ENST00000427112 SMC4Q9NTJ3 1288 aa11.07□□□□□ -0.64
USP40-203ENST00000427112 MINK1Q8N4C8 1332 aaPredicted RBP11.07□□□□□ -0.64
USP40-203ENST00000427112 CCDC141Q6ZP82 1450 aa11.06□□□□□ -0.64
USP40-203ENST00000427112 TRAPPC8Q9Y2L5 1435 aa11.06□□□□□ -0.64
USP40-203ENST00000427112 E9PSI1 815 aa11.06□□□□□ -0.64
USP40-203ENST00000427112 LNPKQ9C0E8 428 aa11.06□□□□□ -0.64
USP40-203ENST00000427112 PANK2Q9BZ23 570 aa11.06□□□□□ -0.64
USP40-203ENST00000427112 SLC24A1O60721 1099 aa11.05□□□□□ -0.64
USP40-203ENST00000427112 EXOSC9Q06265 439 aaKnown RBP11.05□□□□□ -0.64
USP40-203ENST00000427112 SCAPERQ9BY12 1400 aa11.05□□□□□ -0.64
USP40-203ENST00000427112 HMOX1P09601 288 aa11.05□□□□□ -0.64
USP40-203ENST00000427112 SYNJ2O15056 1496 aa11.05□□□□□ -0.64
USP40-203ENST00000427112 UPF2Q9HAU5 1272 aaKnown RBP11.05□□□□□ -0.64
USP40-203ENST00000427112 COL17A1Q9UMD9 1497 aaPredicted RBP11.04□□□□□ -0.64
USP40-203ENST00000427112 UGGT1Q9NYU2 1555 aa11.04□□□□□ -0.64
USP40-203ENST00000427112 MLECQ14165 292 aa11.04□□□□□ -0.64
USP40-203ENST00000427112 CDCA8Q53HL2 280 aa11.04□□□□□ -0.64
USP40-203ENST00000427112 HSP90AA1P07900 732 aaKnown RBP11.04□□□□□ -0.64
USP40-203ENST00000427112 RARSP54136 660 aaKnown RBP11.03□□□□□ -0.64
USP40-203ENST00000427112 FOXD4L5Q5VV16 416 aaPredicted RBP11.03□□□□□ -0.64
USP40-203ENST00000427112 FOXD4L4Q8WXT5 416 aaPredicted RBP11.03□□□□□ -0.64
USP40-203ENST00000427112 ABCC10Q5T3U5 1492 aa11.03□□□□□ -0.64
USP40-203ENST00000427112 ARID3AQ99856 593 aa11.03□□□□□ -0.64
USP40-203ENST00000427112 PKNOX2Q96KN3 472 aa11.02□□□□□ -0.64
USP40-203ENST00000427112 PODXL2Q9NZ53 605 aa11.02□□□□□ -0.64
USP40-203ENST00000427112 ADGRL2O95490 1459 aa11.02□□□□□ -0.64
USP40-203ENST00000427112 KDM5DQ9BY66 1539 aa11.02□□□□□ -0.64
USP40-203ENST00000427112 CDC42BPAQ5VT25 1732 aa11.02□□□□□ -0.64
USP40-203ENST00000427112 USP35Q9P2H5 1018 aa11.02□□□□□ -0.65
USP40-203ENST00000427112 CHD1O14646 1710 aa11.02□□□□□ -0.65
USP40-203ENST00000427112 TBC1D2Q9BYX2 928 aa11.02□□□□□ -0.65
USP40-203ENST00000427112 USP19O94966 1318 aa11.01□□□□□ -0.65
USP40-203ENST00000427112 ERCC6L2Q5T890 1561 aa11.01□□□□□ -0.65
USP40-203ENST00000427112 BECN1Q14457 450 aa11.01□□□□□ -0.65
USP40-203ENST00000427112 ZNF428Q96B54 188 aa11.01□□□□□ -0.65
USP40-203ENST00000427112 NSD3Q9BZ95 1437 aa11.01□□□□□ -0.65
USP40-203ENST00000427112 ARHGEF12Q9NZN5 1544 aa11□□□□□ -0.65
USP40-203ENST00000427112 RAPGEF3O95398 923 aa11□□□□□ -0.65
USP40-203ENST00000427112 BLMP54132 1417 aaPredicted RBP11□□□□□ -0.65
USP40-203ENST00000427112 SAMD9LQ8IVG5 1584 aa11□□□□□ -0.65
USP40-203ENST00000427112 NAP1L5Q96NT1 182 aaPredicted RBP11□□□□□ -0.65
USP40-203ENST00000427112 WDR7Q9Y4E6 1490 aa11□□□□□ -0.65
USP40-203ENST00000427112 ZNF521Q96K83 1311 aa10.99□□□□□ -0.65
USP40-203ENST00000427112 FOXD4L6Q3SYB3 417 aaPredicted RBP10.99□□□□□ -0.65
USP40-203ENST00000427112 FOXD4L3Q6VB84 417 aaPredicted RBP10.99□□□□□ -0.65
USP40-203ENST00000427112 RBM42Q9BTD8 480 aaKnown RBP10.99□□□□□ -0.65
USP40-203ENST00000427112 NOB1Q9ULX3 412 aaKnown RBP10.99□□□□□ -0.65
USP40-203ENST00000427112 ITSN2Q9NZM3 1697 aa10.99□□□□□ -0.65
USP40-203ENST00000427112 NCLP19338 710 aaKnown RBP10.99□□□□□ -0.65
USP40-203ENST00000427112 STAG3Q9UJ98 1225 aa10.99□□□□□ -0.65
USP40-203ENST00000427112 ADGBQ8N7X0 1667 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 DTNBO60941 627 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 SSH1Q8WYL5 1049 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 RUNDC1Q96C34 613 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms