RNA–Protein interactions for RNA: ENST00000424339.1

EPHA4-206, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 492 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-206ENST00000424339 CFAP74Q9C0B2 1584 aa10.84□□□□□ -0.67
EPHA4-206ENST00000424339 TTC37Q6PGP7 1564 aa10.83□□□□□ -0.68
EPHA4-206ENST00000424339 CCNB3Q8WWL7 1395 aa10.83□□□□□ -0.68
EPHA4-206ENST00000424339 KIF3CO14782 793 aa10.83□□□□□ -0.68
EPHA4-206ENST00000424339 KANK4Q5T7N3 995 aaPredicted RBP10.83□□□□□ -0.68
EPHA4-206ENST00000424339 BCL11BQ9C0K0 894 aaPredicted RBP10.83□□□□□ -0.68
EPHA4-206ENST00000424339 PLCH2O75038 1416 aa10.83□□□□□ -0.68
EPHA4-206ENST00000424339 ARHGAP33O14559 1287 aa10.82□□□□□ -0.68
EPHA4-206ENST00000424339 ADGRD1Q6QNK2 874 aa10.82□□□□□ -0.68
EPHA4-206ENST00000424339 STK24Q9Y6E0 443 aa10.82□□□□□ -0.68
EPHA4-206ENST00000424339 PREX2Q70Z35 1606 aa10.82□□□□□ -0.68
EPHA4-206ENST00000424339 SLC34A2O95436 690 aa10.81□□□□□ -0.68
EPHA4-206ENST00000424339 MIA2Q96PC5 1412 aa10.81□□□□□ -0.68
EPHA4-206ENST00000424339 CDC42BPAQ5VT25 1732 aa10.81□□□□□ -0.68
EPHA4-206ENST00000424339 NEO1Q92859 1461 aa10.81□□□□□ -0.68
EPHA4-206ENST00000424339 GPATCH8Q9UKJ3 1502 aaKnown RBP10.8□□□□□ -0.68
EPHA4-206ENST00000424339 TMC2Q8TDI7 906 aa10.8□□□□□ -0.68
EPHA4-206ENST00000424339 MYOM3Q5VTT5 1437 aa10.8□□□□□ -0.68
EPHA4-206ENST00000424339 PSDA5PKW4 1024 aaPredicted RBP10.79□□□□□ -0.68
EPHA4-206ENST00000424339 EFCAB2Q5VUJ9 269 aa10.79□□□□□ -0.68
EPHA4-206ENST00000424339 STAC3Q96MF2 364 aa10.79□□□□□ -0.68
EPHA4-206ENST00000424339 FANCAO15360 1455 aa10.79□□□□□ -0.68
EPHA4-206ENST00000424339 PLEKHH2Q8IVE3 1493 aa10.79□□□□□ -0.68
EPHA4-206ENST00000424339 ARHGAP5Q13017 1502 aa10.79□□□□□ -0.68
EPHA4-206ENST00000424339 CDC42BPBQ9Y5S2 1711 aa10.78□□□□□ -0.68
EPHA4-206ENST00000424339 MFRPQ9BY79 579 aa10.77□□□□□ -0.69
EPHA4-206ENST00000424339 CFDP1Q9UEE9 299 aaPredicted RBP10.77□□□□□ -0.69
EPHA4-206ENST00000424339 TSPOAP1O95153 1857 aa10.76□□□□□ -0.69
EPHA4-206ENST00000424339 PPRC1Q5VV67 1664 aaKnown RBP10.76□□□□□ -0.69
EPHA4-206ENST00000424339 KIAA1107Q9UPP5 1409 aa10.75□□□□□ -0.69
EPHA4-206ENST00000424339 FGD6Q6ZV73 1430 aa10.75□□□□□ -0.69
EPHA4-206ENST00000424339 TK2O00142 265 aa10.74□□□□□ -0.69
EPHA4-206ENST00000424339 SLC24A1O60721 1099 aa10.74□□□□□ -0.69
EPHA4-206ENST00000424339 RSPH4AQ5TD94 716 aa10.74□□□□□ -0.69
EPHA4-206ENST00000424339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.74□□□□□ -0.69
EPHA4-206ENST00000424339 AKNAQ7Z591 1439 aa10.74□□□□□ -0.69
EPHA4-206ENST00000424339 STK25O00506 426 aa10.73□□□□□ -0.69
EPHA4-206ENST00000424339 ADGRL1O94910 1474 aa10.73□□□□□ -0.69
EPHA4-206ENST00000424339 TCOF1Q13428 1488 aaKnown RBP10.73□□□□□ -0.69
EPHA4-206ENST00000424339 ABCC1P33527 1531 aa10.73□□□□□ -0.69
EPHA4-206ENST00000424339 KCTD12Q96CX2 325 aaKnown RBP10.72□□□□□ -0.69
EPHA4-206ENST00000424339 RRBP1Q9P2E9 1410 aaKnown RBP10.72□□□□□ -0.69
EPHA4-206ENST00000424339 SAMD9LQ8IVG5 1584 aa10.72□□□□□ -0.69
EPHA4-206ENST00000424339 PTPN23Q9H3S7 1636 aa10.72□□□□□ -0.69
EPHA4-206ENST00000424339 CAMSAP2Q08AD1 1489 aa10.71□□□□□ -0.69
EPHA4-206ENST00000424339 ZNF518AQ6AHZ1 1483 aa10.71□□□□□ -0.69
EPHA4-206ENST00000424339 ARHGEF5Q12774 1597 aa10.7□□□□□ -0.7
EPHA4-206ENST00000424339 DENND4BO75064 1496 aaPredicted RBP10.7□□□□□ -0.7
EPHA4-206ENST00000424339 PSEN2P49810 448 aa10.7□□□□□ -0.7
EPHA4-206ENST00000424339 SCAPERQ9BY12 1400 aa10.69□□□□□ -0.7
EPHA4-206ENST00000424339 HRO43593 1189 aa10.69□□□□□ -0.7
EPHA4-206ENST00000424339 DMRTA1Q5VZB9 504 aa10.69□□□□□ -0.7
EPHA4-206ENST00000424339 ZNF777Q9ULD5 760 aaPredicted RBP10.69□□□□□ -0.7
EPHA4-206ENST00000424339 KDM6BO15054 1643 aa10.69□□□□□ -0.7
EPHA4-206ENST00000424339 SYCP2Q9BX26 1530 aa10.68□□□□□ -0.7
EPHA4-206ENST00000424339 POGZQ7Z3K3 1410 aa10.68□□□□□ -0.7
EPHA4-206ENST00000424339 CCDC141Q6ZP82 1450 aa10.68□□□□□ -0.7
EPHA4-206ENST00000424339 MAGI2Q86UL8 1455 aa10.68□□□□□ -0.7
EPHA4-206ENST00000424339 MBD5Q9P267 1494 aa10.68□□□□□ -0.7
EPHA4-206ENST00000424339 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
EPHA4-206ENST00000424339 KDM5CP41229 1560 aa10.67□□□□□ -0.7
EPHA4-206ENST00000424339 ZMYM4Q5VZL5 1548 aa10.67□□□□□ -0.7
EPHA4-206ENST00000424339 SHANK2Q9UPX8 1470 aa10.67□□□□□ -0.7
EPHA4-206ENST00000424339 RICTORQ6R327 1708 aa10.67□□□□□ -0.7
EPHA4-206ENST00000424339 DNMT1P26358 1616 aaKnown RBP10.66□□□□□ -0.7
EPHA4-206ENST00000424339 RTEL1-TNFRSF6BF6WH68 1400 aa10.65□□□□□ -0.7
EPHA4-206ENST00000424339 ZNF644Q9H582 1327 aaPredicted RBP10.64□□□□□ -0.71
EPHA4-206ENST00000424339 MLH3Q9UHC1 1453 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 TSPY4P0CV99 314 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 TSPY10P0CW01 314 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 FAM50AQ14320 339 aaKnown RBP10.64□□□□□ -0.71
EPHA4-206ENST00000424339 PPP4R3BQ5MIZ7 849 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 DAPK1P53355 1430 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 HECW2Q9P2P5 1572 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 MAST1Q9Y2H9 1570 aa10.64□□□□□ -0.71
EPHA4-206ENST00000424339 ARHGEF12Q9NZN5 1544 aa10.63□□□□□ -0.71
EPHA4-206ENST00000424339 CROCC2H7BZ55 1655 aa10.63□□□□□ -0.71
EPHA4-206ENST00000424339 PTPN5P54829 565 aa10.63□□□□□ -0.71
EPHA4-206ENST00000424339 PTCD2Q8WV60 388 aaKnown RBP10.63□□□□□ -0.71
EPHA4-206ENST00000424339 RTN4Q9NQC3 1192 aaKnown RBP10.63□□□□□ -0.71
EPHA4-206ENST00000424339 TRAPPC8Q9Y2L5 1435 aa10.63□□□□□ -0.71
EPHA4-206ENST00000424339 FRMPD1Q5SYB0 1578 aa10.63□□□□□ -0.71
EPHA4-206ENST00000424339 INO80Q9ULG1 1556 aaPredicted RBP10.62□□□□□ -0.71
EPHA4-206ENST00000424339 HNRNPMP52272 730 aaKnown RBP eCLIP10.62□□□□□ -0.71
EPHA4-206ENST00000424339 COL17A1Q9UMD9 1497 aaPredicted RBP10.61□□□□□ -0.71
EPHA4-206ENST00000424339 SPAG9O60271 1321 aaKnown RBP10.61□□□□□ -0.71
EPHA4-206ENST00000424339 ABCC5O15440 1437 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 C9orf84Q5VXU9 1444 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 KDM4FA0A1W2PPD8 638 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 TBC1D12O60347 775 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 RGS20O76081 388 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 RAPGEF3O95398 923 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 ATP7AQ04656 1500 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 ROCK1Q13464 1354 aa10.61□□□□□ -0.71
EPHA4-206ENST00000424339 PLXNC1O60486 1568 aa10.6□□□□□ -0.71
EPHA4-206ENST00000424339 ZFYVE16Q7Z3T8 1539 aa10.6□□□□□ -0.71
EPHA4-206ENST00000424339 AFAP1Q8N556 730 aa10.6□□□□□ -0.71
EPHA4-206ENST00000424339 ADGRL2O95490 1459 aa10.6□□□□□ -0.71
EPHA4-206ENST00000424339 ADGBQ8N7X0 1667 aa10.6□□□□□ -0.71
EPHA4-206ENST00000424339 ARHGEF40Q8TER5 1519 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 253.6 ms