RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 ITGBL1O95965 494 aaPredicted RBP8.45□□□□□ -1.06
HMGB3P20-201ENST00000417997 NLRP7Q8WX94 980 aa8.45□□□□□ -1.06
HMGB3P20-201ENST00000417997 LMOD2Q6P5Q4 547 aa8.44□□□□□ -1.06
HMGB3P20-201ENST00000417997 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.44□□□□□ -1.06
HMGB3P20-201ENST00000417997 MTRQ99707 1265 aa8.43□□□□□ -1.06
HMGB3P20-201ENST00000417997 COPS2P61201 443 aa8.42□□□□□ -1.06
HMGB3P20-201ENST00000417997 IFFO2Q5TF58 517 aa8.42□□□□□ -1.06
HMGB3P20-201ENST00000417997 PRR14Q9BWN1 585 aa8.42□□□□□ -1.06
HMGB3P20-201ENST00000417997 A0A0G2JS52 829 aa8.41□□□□□ -1.06
HMGB3P20-201ENST00000417997 CFHP08603 1231 aa8.41□□□□□ -1.06
HMGB3P20-201ENST00000417997 MAP2K5Q13163 448 aa8.41□□□□□ -1.06
HMGB3P20-201ENST00000417997 TJAP1Q5JTD0 557 aa8.41□□□□□ -1.06
HMGB3P20-201ENST00000417997 IL21Q9HBE4 155 aa8.41□□□□□ -1.06
HMGB3P20-201ENST00000417997 KMT5BQ4FZB7 885 aa8.4□□□□□ -1.06
HMGB3P20-201ENST00000417997 RSPH4AQ5TD94 716 aa8.4□□□□□ -1.06
HMGB3P20-201ENST00000417997 RDH13Q8NBN7 331 aa8.4□□□□□ -1.06
HMGB3P20-201ENST00000417997 PCDHB3Q9Y5E6 796 aa8.4□□□□□ -1.06
HMGB3P20-201ENST00000417997 DDX11L8A8MPP1 907 aa8.39□□□□□ -1.07
HMGB3P20-201ENST00000417997 SLC24A1O60721 1099 aa8.39□□□□□ -1.07
HMGB3P20-201ENST00000417997 ZNF516Q92618 1163 aa8.39□□□□□ -1.07
HMGB3P20-201ENST00000417997 PHOX2BQ99453 314 aa8.39□□□□□ -1.07
HMGB3P20-201ENST00000417997 SLC10A3P09131 477 aa8.38□□□□□ -1.07
HMGB3P20-201ENST00000417997 KRI1Q8N9T8 703 aaKnown RBP8.38□□□□□ -1.07
HMGB3P20-201ENST00000417997 DAXXQ9UER7 740 aaPredicted RBP8.38□□□□□ -1.07
HMGB3P20-201ENST00000417997 MINK1Q8N4C8 1332 aaPredicted RBP8.37□□□□□ -1.07
HMGB3P20-201ENST00000417997 IRF6O14896 467 aa8.37□□□□□ -1.07
HMGB3P20-201ENST00000417997 NISCHQ9Y2I1 1504 aa8.37□□□□□ -1.07
HMGB3P20-201ENST00000417997 BLOC1S3Q6QNY0 202 aa8.36□□□□□ -1.07
HMGB3P20-201ENST00000417997 CCDC102AQ96A19 550 aa8.36□□□□□ -1.07
HMGB3P20-201ENST00000417997 ACTN4O43707 911 aaKnown RBP8.34□□□□□ -1.07
HMGB3P20-201ENST00000417997 MDM2Q00987 491 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P20-201ENST00000417997 SULF1Q8IWU6 871 aa8.34□□□□□ -1.07
HMGB3P20-201ENST00000417997 NKX2-3Q8TAU0 364 aa8.34□□□□□ -1.07
HMGB3P20-201ENST00000417997 ZPR1O75312 459 aa8.32□□□□□ -1.08
HMGB3P20-201ENST00000417997 ZC3H15Q8WU90 426 aaKnown RBP8.32□□□□□ -1.08
HMGB3P20-201ENST00000417997 PUS10Q3MIT2 529 aaKnown RBP8.31□□□□□ -1.08
HMGB3P20-201ENST00000417997 TLL1O43897 1013 aa8.3□□□□□ -1.08
HMGB3P20-201ENST00000417997 NR1I2O75469 434 aa8.3□□□□□ -1.08
HMGB3P20-201ENST00000417997 ZMYND10O75800 440 aa8.29□□□□□ -1.08
HMGB3P20-201ENST00000417997 RGS20O76081 388 aa8.29□□□□□ -1.08
HMGB3P20-201ENST00000417997 PPP1R18Q6NYC8 613 aa8.29□□□□□ -1.08
HMGB3P20-201ENST00000417997 BARGINQ6ZT62 677 aa8.29□□□□□ -1.08
HMGB3P20-201ENST00000417997 GGCXP38435 758 aa8.28□□□□□ -1.08
HMGB3P20-201ENST00000417997 GCGRP47871 477 aa8.28□□□□□ -1.08
HMGB3P20-201ENST00000417997 FUT2Q10981 343 aa8.28□□□□□ -1.08
HMGB3P20-201ENST00000417997 CLCN1P35523 988 aa8.27□□□□□ -1.09
HMGB3P20-201ENST00000417997 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.27□□□□□ -1.09
HMGB3P20-201ENST00000417997 TTLL12Q14166 644 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P20-201ENST00000417997 SCUBE3Q8IX30 993 aa8.26□□□□□ -1.09
HMGB3P20-201ENST00000417997 GPCPD1Q9NPB8 672 aa8.26□□□□□ -1.09
HMGB3P20-201ENST00000417997 ATP6V1AP38606 617 aa8.25□□□□□ -1.09
HMGB3P20-201ENST00000417997 BCANQ96GW7 911 aa8.25□□□□□ -1.09
HMGB3P20-201ENST00000417997 CD46P15529 392 aa8.24□□□□□ -1.09
HMGB3P20-201ENST00000417997 S1PR4O95977 384 aa8.23□□□□□ -1.09
HMGB3P20-201ENST00000417997 ADH1BP00325 375 aa8.23□□□□□ -1.09
HMGB3P20-201ENST00000417997 GRIPAP1Q4V328 841 aa8.23□□□□□ -1.09
HMGB3P20-201ENST00000417997 MORN1Q5T089 497 aa8.23□□□□□ -1.09
HMGB3P20-201ENST00000417997 PRKD2Q9BZL6 878 aa8.23□□□□□ -1.09
HMGB3P20-201ENST00000417997 KDM4AO75164 1064 aa8.22□□□□□ -1.09
HMGB3P20-201ENST00000417997 SPSB2Q99619 263 aa8.22□□□□□ -1.09
HMGB3P20-201ENST00000417997 FAM217BQ9NTX9 383 aaPredicted RBP8.22□□□□□ -1.09
HMGB3P20-201ENST00000417997 IRX2Q9BZI1 471 aaPredicted RBP8.21□□□□□ -1.1
HMGB3P20-201ENST00000417997 SLC6A16Q9GZN6 736 aa8.21□□□□□ -1.1
HMGB3P20-201ENST00000417997 SLC27A5Q9Y2P5 690 aa8.21□□□□□ -1.1
HMGB3P20-201ENST00000417997 RNF223E7ERA6 249 aa8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 PPEF1O14829 653 aaPredicted RBP8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 NUTM1Q86Y26 1132 aa8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 AK7Q96M32 723 aa8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 TMUB1Q9BVT8 246 aa8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 REPIN1Q9BWE0 567 aaKnown RBP8.2□□□□□ -1.1
HMGB3P20-201ENST00000417997 FMNL1O95466 1100 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P20-201ENST00000417997 SSTR3P32745 418 aaPredicted RBP8.18□□□□□ -1.1
HMGB3P20-201ENST00000417997 AMHR2Q16671 573 aa8.18□□□□□ -1.1
HMGB3P20-201ENST00000417997 TRIM66O15016 1216 aa8.17□□□□□ -1.1
HMGB3P20-201ENST00000417997 USP46P62068 366 aa8.17□□□□□ -1.1
HMGB3P20-201ENST00000417997 GIGYF2Q6Y7W6 1299 aaKnown RBP8.17□□□□□ -1.1
HMGB3P20-201ENST00000417997 HLA-CQ95604 372 aa8.17□□□□□ -1.1
HMGB3P20-201ENST00000417997 SLC24A3Q9HC58 644 aa8.17□□□□□ -1.1
HMGB3P20-201ENST00000417997 Q3C1V9 767 aa8.16□□□□□ -1.1
HMGB3P20-201ENST00000417997 RNF19BQ6ZMZ0 732 aa8.16□□□□□ -1.1
HMGB3P20-201ENST00000417997 HOXA2O43364 376 aa8.15□□□□□ -1.1
HMGB3P20-201ENST00000417997 BRICD5Q6PL45 260 aa8.15□□□□□ -1.1
HMGB3P20-201ENST00000417997 ANKLE1Q8NAG6 615 aa8.15□□□□□ -1.1
HMGB3P20-201ENST00000417997 THAP11Q96EK4 314 aa8.15□□□□□ -1.1
HMGB3P20-201ENST00000417997 V9GY48 417 aaPredicted RBP8.15□□□□□ -1.1
HMGB3P20-201ENST00000417997 SLC19A1P41440 591 aa8.14□□□□□ -1.11
HMGB3P20-201ENST00000417997 GUCA2AQ02747 115 aa8.14□□□□□ -1.11
HMGB3P20-201ENST00000417997 PARP9Q8IXQ6 854 aa8.14□□□□□ -1.11
HMGB3P20-201ENST00000417997 PRDM9Q9NQV7 894 aa8.14□□□□□ -1.11
HMGB3P20-201ENST00000417997 FAM160A2Q8N612 972 aaPredicted RBP8.13□□□□□ -1.11
HMGB3P20-201ENST00000417997 SALL2Q9Y467 1007 aaPredicted RBP8.13□□□□□ -1.11
HMGB3P20-201ENST00000417997 BEGAINQ9BUH8 593 aa8.12□□□□□ -1.11
HMGB3P20-201ENST00000417997 GFRA3O60609 400 aa8.11□□□□□ -1.11
HMGB3P20-201ENST00000417997 PDE4DQ08499 809 aa8.11□□□□□ -1.11
HMGB3P20-201ENST00000417997 FCF1Q9Y324 198 aaKnown RBP8.11□□□□□ -1.11
HMGB3P20-201ENST00000417997 SPIRE2Q8WWL2 714 aa8.1□□□□□ -1.11
HMGB3P20-201ENST00000417997 USB1Q9BQ65 265 aaKnown RBP8.1□□□□□ -1.11
HMGB3P20-201ENST00000417997 FDX1P10109 184 aa8.09□□□□□ -1.11
HMGB3P20-201ENST00000417997 NDUFV2P19404 249 aa8.09□□□□□ -1.11
HMGB3P20-201ENST00000417997 MSS51Q4VC12 460 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms