RNA–Protein interactions for RNA: ENST00000411993.1

HDAC9-205, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 626 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-205ENST00000411993 METTL3Q86U44 580 aaKnown RBP11.8□□□□□ -0.52
HDAC9-205ENST00000411993 MAP2K5Q13163 448 aa11.75□□□□□ -0.53
HDAC9-205ENST00000411993 ITGBL1O95965 494 aaPredicted RBP11.74□□□□□ -0.53
HDAC9-205ENST00000411993 APLP1P51693 650 aa11.73□□□□□ -0.53
HDAC9-205ENST00000411993 KCNC4Q03721 635 aa11.73□□□□□ -0.53
HDAC9-205ENST00000411993 PRR14Q9BWN1 585 aa11.73□□□□□ -0.53
HDAC9-205ENST00000411993 IFFO2Q5TF58 517 aa11.72□□□□□ -0.53
HDAC9-205ENST00000411993 NLRP7Q8WX94 980 aa11.71□□□□□ -0.53
HDAC9-205ENST00000411993 MINK1Q8N4C8 1332 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-205ENST00000411993 KMT5BQ4FZB7 885 aa11.69□□□□□ -0.54
HDAC9-205ENST00000411993 RSPH4AQ5TD94 716 aa11.69□□□□□ -0.54
HDAC9-205ENST00000411993 MTRQ99707 1265 aa11.69□□□□□ -0.54
HDAC9-205ENST00000411993 IRF6O14896 467 aa11.68□□□□□ -0.54
HDAC9-205ENST00000411993 CFHP08603 1231 aa11.68□□□□□ -0.54
HDAC9-205ENST00000411993 PHOX2BQ99453 314 aa11.68□□□□□ -0.54
HDAC9-205ENST00000411993 IL21Q9HBE4 155 aa11.68□□□□□ -0.54
HDAC9-205ENST00000411993 DAXXQ9UER7 740 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-205ENST00000411993 A0A0G2JS52 829 aa11.66□□□□□ -0.54
HDAC9-205ENST00000411993 TJAP1Q5JTD0 557 aa11.66□□□□□ -0.54
HDAC9-205ENST00000411993 KRI1Q8N9T8 703 aaKnown RBP11.66□□□□□ -0.54
HDAC9-205ENST00000411993 RDH13Q8NBN7 331 aa11.66□□□□□ -0.54
HDAC9-205ENST00000411993 CCDC102AQ96A19 550 aa11.66□□□□□ -0.54
HDAC9-205ENST00000411993 PCDHB3Q9Y5E6 796 aa11.66□□□□□ -0.54
HDAC9-205ENST00000411993 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
HDAC9-205ENST00000411993 SLC10A3P09131 477 aa11.65□□□□□ -0.54
HDAC9-205ENST00000411993 COPS2P61201 443 aa11.65□□□□□ -0.54
HDAC9-205ENST00000411993 ZC3H15Q8WU90 426 aaKnown RBP11.65□□□□□ -0.54
HDAC9-205ENST00000411993 SULF1Q8IWU6 871 aa11.64□□□□□ -0.55
HDAC9-205ENST00000411993 ACTN4O43707 911 aaKnown RBP11.62□□□□□ -0.55
HDAC9-205ENST00000411993 BCANQ96GW7 911 aa11.61□□□□□ -0.55
HDAC9-205ENST00000411993 ZMYND10O75800 440 aa11.6□□□□□ -0.55
HDAC9-205ENST00000411993 BARGINQ6ZT62 677 aa11.6□□□□□ -0.55
HDAC9-205ENST00000411993 ZNF516Q92618 1163 aa11.6□□□□□ -0.55
HDAC9-205ENST00000411993 MDM2Q00987 491 aaPredicted RBP11.59□□□□□ -0.55
HDAC9-205ENST00000411993 BLOC1S3Q6QNY0 202 aa11.59□□□□□ -0.55
HDAC9-205ENST00000411993 ZPR1O75312 459 aa11.55□□□□□ -0.56
HDAC9-205ENST00000411993 NR1I2O75469 434 aa11.54□□□□□ -0.56
HDAC9-205ENST00000411993 CLCN1P35523 988 aa11.54□□□□□ -0.56
HDAC9-205ENST00000411993 GPCPD1Q9NPB8 672 aa11.54□□□□□ -0.56
HDAC9-205ENST00000411993 RGS20O76081 388 aa11.53□□□□□ -0.56
HDAC9-205ENST00000411993 GCGRP47871 477 aa11.52□□□□□ -0.57
HDAC9-205ENST00000411993 PUS10Q3MIT2 529 aaKnown RBP11.52□□□□□ -0.57
HDAC9-205ENST00000411993 NKX2-3Q8TAU0 364 aa11.52□□□□□ -0.57
HDAC9-205ENST00000411993 TLL1O43897 1013 aa11.51□□□□□ -0.57
HDAC9-205ENST00000411993 FUT2Q10981 343 aa11.51□□□□□ -0.57
HDAC9-205ENST00000411993 TTLL12Q14166 644 aaPredicted RBP11.5□□□□□ -0.57
HDAC9-205ENST00000411993 CD46P15529 392 aa11.49□□□□□ -0.57
HDAC9-205ENST00000411993 GGCXP38435 758 aa11.49□□□□□ -0.57
HDAC9-205ENST00000411993 ATP6V1AP38606 617 aa11.48□□□□□ -0.57
HDAC9-205ENST00000411993 PPP1R18Q6NYC8 613 aa11.48□□□□□ -0.57
HDAC9-205ENST00000411993 GRIPAP1Q4V328 841 aa11.47□□□□□ -0.57
HDAC9-205ENST00000411993 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.47□□□□□ -0.57
HDAC9-205ENST00000411993 FAM217BQ9NTX9 383 aaPredicted RBP11.47□□□□□ -0.57
HDAC9-205ENST00000411993 SCUBE3Q8IX30 993 aa11.46□□□□□ -0.57
HDAC9-205ENST00000411993 AK7Q96M32 723 aa11.46□□□□□ -0.57
HDAC9-205ENST00000411993 ADH1BP00325 375 aa11.45□□□□□ -0.58
HDAC9-205ENST00000411993 AMHR2Q16671 573 aa11.45□□□□□ -0.58
HDAC9-205ENST00000411993 MORN1Q5T089 497 aa11.45□□□□□ -0.58
HDAC9-205ENST00000411993 TMUB1Q9BVT8 246 aa11.45□□□□□ -0.58
HDAC9-205ENST00000411993 KDM4AO75164 1064 aa11.44□□□□□ -0.58
HDAC9-205ENST00000411993 TRIM66O15016 1216 aa11.42□□□□□ -0.58
HDAC9-205ENST00000411993 REPIN1Q9BWE0 567 aaKnown RBP11.42□□□□□ -0.58
HDAC9-205ENST00000411993 SPSB2Q99619 263 aa11.41□□□□□ -0.58
HDAC9-205ENST00000411993 SLC24A3Q9HC58 644 aa11.41□□□□□ -0.58
HDAC9-205ENST00000411993 SLC27A5Q9Y2P5 690 aa11.41□□□□□ -0.58
HDAC9-205ENST00000411993 S1PR4O95977 384 aa11.4□□□□□ -0.58
HDAC9-205ENST00000411993 SSTR3P32745 418 aaPredicted RBP11.4□□□□□ -0.58
HDAC9-205ENST00000411993 USP46P62068 366 aa11.4□□□□□ -0.58
HDAC9-205ENST00000411993 GIGYF2Q6Y7W6 1299 aaKnown RBP11.4□□□□□ -0.58
HDAC9-205ENST00000411993 NUTM1Q86Y26 1132 aa11.4□□□□□ -0.58
HDAC9-205ENST00000411993 FMNL1O95466 1100 aaPredicted RBP11.39□□□□□ -0.59
HDAC9-205ENST00000411993 SLC6A16Q9GZN6 736 aa11.39□□□□□ -0.59
HDAC9-205ENST00000411993 RNF223E7ERA6 249 aa11.37□□□□□ -0.59
HDAC9-205ENST00000411993 PARP9Q8IXQ6 854 aa11.37□□□□□ -0.59
HDAC9-205ENST00000411993 PRKD2Q9BZL6 878 aa11.37□□□□□ -0.59
HDAC9-205ENST00000411993 HOXA2O43364 376 aa11.36□□□□□ -0.59
HDAC9-205ENST00000411993 Q3C1V9 767 aa11.36□□□□□ -0.59
HDAC9-205ENST00000411993 THAP11Q96EK4 314 aa11.35□□□□□ -0.59
HDAC9-205ENST00000411993 PPEF1O14829 653 aaPredicted RBP11.34□□□□□ -0.59
HDAC9-205ENST00000411993 PDE4DQ08499 809 aa11.34□□□□□ -0.59
HDAC9-205ENST00000411993 HLA-CQ95604 372 aa11.34□□□□□ -0.59
HDAC9-205ENST00000411993 SALL2Q9Y467 1007 aaPredicted RBP11.34□□□□□ -0.59
HDAC9-205ENST00000411993 BRICD5Q6PL45 260 aa11.33□□□□□ -0.6
HDAC9-205ENST00000411993 RNF19BQ6ZMZ0 732 aa11.33□□□□□ -0.6
HDAC9-205ENST00000411993 ANKLE1Q8NAG6 615 aa11.33□□□□□ -0.6
HDAC9-205ENST00000411993 IRX2Q9BZI1 471 aaPredicted RBP11.33□□□□□ -0.6
HDAC9-205ENST00000411993 BEGAINQ9BUH8 593 aa11.32□□□□□ -0.6
HDAC9-205ENST00000411993 V9GY48 417 aaPredicted RBP11.32□□□□□ -0.6
HDAC9-205ENST00000411993 GUCA2AQ02747 115 aa11.31□□□□□ -0.6
HDAC9-205ENST00000411993 MS4A1P11836 297 aa11.29□□□□□ -0.6
HDAC9-205ENST00000411993 FAM160A2Q8N612 972 aaPredicted RBP11.29□□□□□ -0.6
HDAC9-205ENST00000411993 SPIRE2Q8WWL2 714 aa11.29□□□□□ -0.6
HDAC9-205ENST00000411993 PRDM9Q9NQV7 894 aa11.29□□□□□ -0.6
HDAC9-205ENST00000411993 MSS51Q4VC12 460 aa11.28□□□□□ -0.6
HDAC9-205ENST00000411993 FDX1P10109 184 aa11.27□□□□□ -0.61
HDAC9-205ENST00000411993 SLC19A1P41440 591 aa11.27□□□□□ -0.61
HDAC9-205ENST00000411993 USB1Q9BQ65 265 aaKnown RBP11.27□□□□□ -0.61
HDAC9-205ENST00000411993 DIXDC1Q155Q3 683 aa11.25□□□□□ -0.61
HDAC9-205ENST00000411993 FCF1Q9Y324 198 aaKnown RBP11.25□□□□□ -0.61
HDAC9-205ENST00000411993 MOXD2PA6NHM9 499 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms