RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LRPPRCP42704 1394 aaKnown RBP17.59■□□□□ 0.41
VPS54-203ENST00000409558 OSCARQ8IYS5 282 aa17.58■□□□□ 0.41
VPS54-203ENST00000409558 CARD14Q9BXL6 1004 aa17.58■□□□□ 0.4
VPS54-203ENST00000409558 CABP2Q9NPB3 220 aa17.58■□□□□ 0.4
VPS54-203ENST00000409558 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.4
VPS54-203ENST00000409558 ADGRL1O94910 1474 aa17.58■□□□□ 0.4
VPS54-203ENST00000409558 GOLGA2Q08379 1002 aa17.58■□□□□ 0.4
VPS54-203ENST00000409558 DUOX2Q9NRD8 1548 aa17.56■□□□□ 0.4
VPS54-203ENST00000409558 CLUAP1Q96AJ1 413 aa17.56■□□□□ 0.4
VPS54-203ENST00000409558 MAGI2Q86UL8 1455 aa17.56■□□□□ 0.4
VPS54-203ENST00000409558 PLEKHH1Q9ULM0 1364 aa17.55■□□□□ 0.4
VPS54-203ENST00000409558 SRPK2P78362 688 aaKnown RBP17.55■□□□□ 0.4
VPS54-203ENST00000409558 U2SURPO15042 1029 aaKnown RBP17.55■□□□□ 0.4
VPS54-203ENST00000409558 COL17A1Q9UMD9 1497 aaPredicted RBP17.54■□□□□ 0.4
VPS54-203ENST00000409558 PDE4AP27815 886 aa17.54■□□□□ 0.4
VPS54-203ENST00000409558 ASXL2Q76L83 1435 aa17.53■□□□□ 0.4
VPS54-203ENST00000409558 ZCCHC11Q5TAX3 1644 aaKnown RBP17.52■□□□□ 0.4
VPS54-203ENST00000409558 MYO5CQ9NQX4 1742 aa17.52■□□□□ 0.4
VPS54-203ENST00000409558 FBLN1P23142 703 aa17.52■□□□□ 0.4
VPS54-203ENST00000409558 MINK1Q8N4C8 1332 aaPredicted RBP17.52■□□□□ 0.4
VPS54-203ENST00000409558 PDE3BQ13370 1112 aa17.52■□□□□ 0.4
VPS54-203ENST00000409558 CENPJQ9HC77 1338 aaPredicted RBP17.52■□□□□ 0.39
VPS54-203ENST00000409558 ATP10AO60312 1499 aa17.5■□□□□ 0.39
VPS54-203ENST00000409558 NOS1P29475 1434 aa17.5■□□□□ 0.39
VPS54-203ENST00000409558 GPRASP1Q5JY77 1395 aa17.5■□□□□ 0.39
VPS54-203ENST00000409558 U2AF1L5P0DN76 240 aaPredicted RBP17.5■□□□□ 0.39
VPS54-203ENST00000409558 U2AF1Q01081 240 aaKnown RBP eCLIP17.5■□□□□ 0.397e-7■■■■□ 23.3
VPS54-203ENST00000409558 RNF123Q5XPI4 1314 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 DUSP27Q5VZP5 1158 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 GGNBP2Q9H3C7 697 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 PANK1Q8TE04 598 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 MTHFSP49914 203 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 FBXO31Q5XUX0 539 aaPredicted RBP17.49■□□□□ 0.39
VPS54-203ENST00000409558 COG6Q9Y2V7 657 aa17.49■□□□□ 0.39
VPS54-203ENST00000409558 TRPM1Q7Z4N2 1603 aa17.48■□□□□ 0.39
VPS54-203ENST00000409558 WDR7Q9Y4E6 1490 aa17.48■□□□□ 0.39
VPS54-203ENST00000409558 POGKQ9P215 609 aa17.48■□□□□ 0.39
VPS54-203ENST00000409558 IPO9Q96P70 1041 aaKnown RBP17.47■□□□□ 0.39
VPS54-203ENST00000409558 EIF3AQ14152 1382 aaKnown RBP17.47■□□□□ 0.39
VPS54-203ENST00000409558 RTL5Q5HYW3 569 aaPredicted RBP17.47■□□□□ 0.39
VPS54-203ENST00000409558 MAST1Q9Y2H9 1570 aa17.47■□□□□ 0.39
VPS54-203ENST00000409558 NUTM2FA1L443 756 aa17.46■□□□□ 0.39
VPS54-203ENST00000409558 TNNQ9UQP3 1299 aa17.46■□□□□ 0.39
VPS54-203ENST00000409558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.46■□□□□ 0.383e-7■■■□□ 15.1
VPS54-203ENST00000409558 SCAF11Q99590 1463 aaKnown RBP17.45■□□□□ 0.38
VPS54-203ENST00000409558 ABCC1P33527 1531 aa17.45■□□□□ 0.38
VPS54-203ENST00000409558 DAXXQ9UER7 740 aaPredicted RBP17.44■□□□□ 0.38
VPS54-203ENST00000409558 CD109Q6YHK3 1445 aa17.44■□□□□ 0.38
VPS54-203ENST00000409558 IDI1Q13907 227 aa17.44■□□□□ 0.38
VPS54-203ENST00000409558 SOX12O15370 315 aa17.43■□□□□ 0.38
VPS54-203ENST00000409558 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.42■□□□□ 0.38
VPS54-203ENST00000409558 DEKP35659 375 aaKnown RBP17.42■□□□□ 0.38
VPS54-203ENST00000409558 TCP11L2Q8N4U5 519 aa17.42■□□□□ 0.38
VPS54-203ENST00000409558 POLR1AO95602 1720 aaPredicted RBP17.41■□□□□ 0.38
VPS54-203ENST00000409558 NSD3Q9BZ95 1437 aa17.41■□□□□ 0.38
VPS54-203ENST00000409558 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
VPS54-203ENST00000409558 SLFN5Q08AF3 891 aa17.41■□□□□ 0.38
VPS54-203ENST00000409558 ATP7AQ04656 1500 aa17.4■□□□□ 0.38
VPS54-203ENST00000409558 TSR2Q969E8 191 aaKnown RBP17.4■□□□□ 0.38
VPS54-203ENST00000409558 PRDM15P57071 1507 aaPredicted RBP17.4■□□□□ 0.38
VPS54-203ENST00000409558 PLEKHG5O94827 1062 aa17.39■□□□□ 0.37
VPS54-203ENST00000409558 FAM69CQ0P6D2 419 aa17.39■□□□□ 0.37
VPS54-203ENST00000409558 UNC13BO14795 1591 aa17.39■□□□□ 0.37
VPS54-203ENST00000409558 IQGAP3Q86VI3 1631 aa17.39■□□□□ 0.37
VPS54-203ENST00000409558 PRAM1Q96QH2 718 aa17.38■□□□□ 0.37
VPS54-203ENST00000409558 ZFYVE16Q7Z3T8 1539 aa17.37■□□□□ 0.37
VPS54-203ENST00000409558 E9PCH4 1651 aa17.37■□□□□ 0.37
VPS54-203ENST00000409558 CLTCL1P53675 1640 aa17.37■□□□□ 0.37
VPS54-203ENST00000409558 BACH2Q9BYV9 841 aa17.37■□□□□ 0.37
VPS54-203ENST00000409558 WWC1Q8IX03 1113 aa17.37■□□□□ 0.37
VPS54-203ENST00000409558 NEFMP07197 916 aa17.36■□□□□ 0.37
VPS54-203ENST00000409558 WAPLQ7Z5K2 1190 aa17.35■□□□□ 0.37
VPS54-203ENST00000409558 CFAP53Q96M91 514 aa17.35■□□□□ 0.37
VPS54-203ENST00000409558 SHROOM2Q13796 1616 aa17.35■□□□□ 0.37
VPS54-203ENST00000409558 ELL2O00472 640 aaPredicted RBP17.35■□□□□ 0.37
VPS54-203ENST00000409558 VGFO15240 615 aaPredicted RBP17.34■□□□□ 0.37
VPS54-203ENST00000409558 PLXNC1O60486 1568 aa17.34■□□□□ 0.37
VPS54-203ENST00000409558 C14orf93Q9H972 538 aaKnown RBP17.34■□□□□ 0.37
VPS54-203ENST00000409558 IGHDP01880 384 aa17.33■□□□□ 0.36
VPS54-203ENST00000409558 E9PSI1 815 aa17.33■□□□□ 0.36
VPS54-203ENST00000409558 RTEL1-TNFRSF6BF6WH68 1400 aa17.32■□□□□ 0.36
VPS54-203ENST00000409558 CGNL1Q0VF96 1302 aa17.32■□□□□ 0.36
VPS54-203ENST00000409558 ASXL1Q8IXJ9 1541 aa17.32■□□□□ 0.36
VPS54-203ENST00000409558 NPATQ14207 1427 aa17.32■□□□□ 0.36
VPS54-203ENST00000409558 EVC2Q86UK5 1308 aa17.32■□□□□ 0.36
VPS54-203ENST00000409558 SPRYD3Q8NCJ5 442 aa17.31■□□□□ 0.36
VPS54-203ENST00000409558 HMOX1P09601 288 aa17.31■□□□□ 0.36
VPS54-203ENST00000409558 BLMP54132 1417 aaPredicted RBP17.31■□□□□ 0.36
VPS54-203ENST00000409558 CLASP1Q7Z460 1538 aa17.3■□□□□ 0.36
VPS54-203ENST00000409558 CABP1Q9NZU7 370 aa17.3■□□□□ 0.36
VPS54-203ENST00000409558 NCKAP5LQ9HCH0 1330 aa17.3■□□□□ 0.36
VPS54-203ENST00000409558 ERVK-7P63135 1459 aa17.3■□□□□ 0.36
VPS54-203ENST00000409558 ESF1Q9H501 851 aaKnown RBP17.29■□□□□ 0.36
VPS54-203ENST00000409558 PTPRTO14522 1441 aa17.29■□□□□ 0.36
VPS54-203ENST00000409558 EIF2AK4Q9P2K8 1649 aaKnown RBP17.29■□□□□ 0.36
VPS54-203ENST00000409558 ARXQ96QS3 562 aa17.29■□□□□ 0.36
VPS54-203ENST00000409558 UHRF1BP1LA0JNW5 1464 aa17.28■□□□□ 0.36
VPS54-203ENST00000409558 THUMPD2Q9BTF0 503 aaKnown RBP17.28■□□□□ 0.36
VPS54-203ENST00000409558 TRPM2O94759 1503 aa17.28■□□□□ 0.36
VPS54-203ENST00000409558 FTSJ3Q8IY81 847 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms