RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ABCC1P33527 1531 aa16.9■□□□□ 0.3
PTPRN-202ENST00000409251 SPATA31E1Q6ZUB1 1445 aa16.9■□□□□ 0.3
PTPRN-202ENST00000409251 TRHP20396 242 aaPredicted RBP16.89■□□□□ 0.29
PTPRN-202ENST00000409251 DUOX2Q9NRD8 1548 aa16.89■□□□□ 0.29
PTPRN-202ENST00000409251 A2MP01023 1474 aa16.88■□□□□ 0.29
PTPRN-202ENST00000409251 TMF1P82094 1093 aa16.88■□□□□ 0.29
PTPRN-202ENST00000409251 DHX29Q7Z478 1369 aaKnown RBP16.88■□□□□ 0.29
PTPRN-202ENST00000409251 DISP3Q9P2K9 1392 aa16.88■□□□□ 0.29
PTPRN-202ENST00000409251 PRAG1Q86YV5 1406 aa16.85■□□□□ 0.29
PTPRN-202ENST00000409251 C20orf194Q5TEA3 1177 aa16.84■□□□□ 0.29
PTPRN-202ENST00000409251 ATP7AQ04656 1500 aa16.84■□□□□ 0.29
PTPRN-202ENST00000409251 ERBINQ96RT1 1412 aa16.83■□□□□ 0.28
PTPRN-202ENST00000409251 PKNOX2Q96KN3 472 aa16.83■□□□□ 0.28
PTPRN-202ENST00000409251 TESK2Q96S53 571 aa16.83■□□□□ 0.28
PTPRN-202ENST00000409251 PNISRQ8TF01 805 aaKnown RBP16.82■□□□□ 0.28
PTPRN-202ENST00000409251 ARID3AQ99856 593 aa16.82■□□□□ 0.28
PTPRN-202ENST00000409251 SMG6Q86US8 1419 aaKnown RBP16.82■□□□□ 0.28
PTPRN-202ENST00000409251 ESF1Q9H501 851 aaKnown RBP16.82■□□□□ 0.28
PTPRN-202ENST00000409251 YEATS2Q9ULM3 1422 aa16.82■□□□□ 0.28
PTPRN-202ENST00000409251 POGKQ9P215 609 aa16.82■□□□□ 0.28
PTPRN-202ENST00000409251 KNSTRNQ9Y448 316 aa16.81■□□□□ 0.28
PTPRN-202ENST00000409251 BCORL1Q5H9F3 1711 aa16.81■□□□□ 0.28
PTPRN-202ENST00000409251 IDI1Q13907 227 aa16.81■□□□□ 0.28
PTPRN-202ENST00000409251 ZFYVE16Q7Z3T8 1539 aa16.8■□□□□ 0.28
PTPRN-202ENST00000409251 CANXP27824 592 aaKnown RBP16.79■□□□□ 0.28
PTPRN-202ENST00000409251 RALGAPBQ86X10 1494 aa16.78■□□□□ 0.28
PTPRN-202ENST00000409251 GLIPR1L2Q4G1C9 344 aa16.77■□□□□ 0.28
PTPRN-202ENST00000409251 ATP10AO60312 1499 aa16.77■□□□□ 0.28
PTPRN-202ENST00000409251 ZNF518AQ6AHZ1 1483 aa16.76■□□□□ 0.27
PTPRN-202ENST00000409251 TSPOAP1O95153 1857 aa16.76■□□□□ 0.27
PTPRN-202ENST00000409251 NUTM2FA1L443 756 aa16.75■□□□□ 0.27
PTPRN-202ENST00000409251 CCDC146Q8IYE0 955 aa16.75■□□□□ 0.27
PTPRN-202ENST00000409251 NOS1P29475 1434 aa16.75■□□□□ 0.27
PTPRN-202ENST00000409251 SLC12A5Q9H2X9 1139 aa16.75■□□□□ 0.27
PTPRN-202ENST00000409251 RSPH6AQ9H0K4 717 aa16.74■□□□□ 0.27
PTPRN-202ENST00000409251 NEUROD2Q15784 382 aa16.74■□□□□ 0.27
PTPRN-202ENST00000409251 MAST1Q9Y2H9 1570 aa16.74■□□□□ 0.27
PTPRN-202ENST00000409251 RTEL1-TNFRSF6BF6WH68 1400 aa16.74■□□□□ 0.27
PTPRN-202ENST00000409251 UHRF1BP1Q6BDS2 1440 aa16.74■□□□□ 0.27
PTPRN-202ENST00000409251 CEBPAP49715 358 aaPredicted RBP16.73■□□□□ 0.27
PTPRN-202ENST00000409251 KTN1Q86UP2 1357 aaKnown RBP16.73■□□□□ 0.27
PTPRN-202ENST00000409251 CABP2Q9NPB3 220 aa16.72■□□□□ 0.27
PTPRN-202ENST00000409251 KDM5DQ9BY66 1539 aa16.72■□□□□ 0.27
PTPRN-202ENST00000409251 MINK1Q8N4C8 1332 aaPredicted RBP16.72■□□□□ 0.27
PTPRN-202ENST00000409251 POGZQ7Z3K3 1410 aa16.72■□□□□ 0.27
PTPRN-202ENST00000409251 PNNQ9H307 717 aaKnown RBP16.71■□□□□ 0.27
PTPRN-202ENST00000409251 KDM5CP41229 1560 aa16.71■□□□□ 0.27
PTPRN-202ENST00000409251 SRPK2P78362 688 aaKnown RBP16.7■□□□□ 0.26
PTPRN-202ENST00000409251 MS4A1P11836 297 aa16.7■□□□□ 0.26
PTPRN-202ENST00000409251 ABCA9Q8IUA7 1624 aa16.7■□□□□ 0.26
PTPRN-202ENST00000409251 NPATQ14207 1427 aa16.7■□□□□ 0.26
PTPRN-202ENST00000409251 MYBBP1AQ9BQG0 1328 aaKnown RBP16.7■□□□□ 0.26
PTPRN-202ENST00000409251 PLEKHG5O94827 1062 aa16.69■□□□□ 0.26
PTPRN-202ENST00000409251 PLXNC1O60486 1568 aa16.69■□□□□ 0.26
PTPRN-202ENST00000409251 PER1O15534 1290 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-202ENST00000409251 PRDM15P57071 1507 aaPredicted RBP16.68■□□□□ 0.26
PTPRN-202ENST00000409251 ZBTB7CA1YPR0 619 aa16.68■□□□□ 0.26
PTPRN-202ENST00000409251 FAM161AQ3B820 660 aa16.68■□□□□ 0.26
PTPRN-202ENST00000409251 HSP90AA2PQ14568 343 aaPredicted RBP16.67■□□□□ 0.26
PTPRN-202ENST00000409251 E9PCH4 1651 aa16.67■□□□□ 0.26
PTPRN-202ENST00000409251 NLRP13Q86W25 1043 aa16.67■□□□□ 0.26
PTPRN-202ENST00000409251 RRAGDQ9NQL2 400 aaPredicted RBP16.67■□□□□ 0.26
PTPRN-202ENST00000409251 UNC13BO14795 1591 aa16.67■□□□□ 0.26
PTPRN-202ENST00000409251 IQGAP3Q86VI3 1631 aa16.66■□□□□ 0.26
PTPRN-202ENST00000409251 WDR43Q15061 677 aaKnown RBP eCLIP16.66■□□□□ 0.26
PTPRN-202ENST00000409251 RALBP1Q15311 655 aa16.65■□□□□ 0.26
PTPRN-202ENST00000409251 ZMYND15Q9H091 742 aa16.65■□□□□ 0.26
PTPRN-202ENST00000409251 ADAMTS8Q9UP79 889 aa16.65■□□□□ 0.26
PTPRN-202ENST00000409251 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
PTPRN-202ENST00000409251 HSP90AA1P07900 732 aaKnown RBP16.64■□□□□ 0.25
PTPRN-202ENST00000409251 KIDINS220Q9ULH0 1771 aa16.64■□□□□ 0.25
PTPRN-202ENST00000409251 FBLN1P23142 703 aa16.64■□□□□ 0.25
PTPRN-202ENST00000409251 WAPLQ7Z5K2 1190 aa16.64■□□□□ 0.25
PTPRN-202ENST00000409251 PANK2Q9BZ23 570 aa16.64■□□□□ 0.25
PTPRN-202ENST00000409251 CLTCL1P53675 1640 aa16.64■□□□□ 0.25
PTPRN-202ENST00000409251 FAM43AQ8N2R8 423 aa16.63■□□□□ 0.25
PTPRN-202ENST00000409251 VGFO15240 615 aaPredicted RBP16.62■□□□□ 0.25
PTPRN-202ENST00000409251 RRP7AQ9Y3A4 280 aaKnown RBP16.62■□□□□ 0.25
PTPRN-202ENST00000409251 PRAM1Q96QH2 718 aa16.62■□□□□ 0.25
PTPRN-202ENST00000409251 CARD14Q9BXL6 1004 aa16.61■□□□□ 0.25
PTPRN-202ENST00000409251 RIMBP3CA6NJZ7 1639 aa16.61■□□□□ 0.25
PTPRN-202ENST00000409251 RIMBP3BA6NNM3 1639 aa16.61■□□□□ 0.25
PTPRN-202ENST00000409251 RIMBP3Q9UFD9 1639 aa16.61■□□□□ 0.25
PTPRN-202ENST00000409251 SOX12O15370 315 aa16.6■□□□□ 0.25
PTPRN-202ENST00000409251 CDCA8Q53HL2 280 aa16.6■□□□□ 0.25
PTPRN-202ENST00000409251 RNF123Q5XPI4 1314 aa16.6■□□□□ 0.25
PTPRN-202ENST00000409251 PPP2R1AP30153 589 aa16.6■□□□□ 0.25
PTPRN-202ENST00000409251 BECN1Q14457 450 aa16.6■□□□□ 0.25
PTPRN-202ENST00000409251 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.25
PTPRN-202ENST00000409251 MORC1Q86VD1 984 aa16.59■□□□□ 0.25
PTPRN-202ENST00000409251 CLUAP1Q96AJ1 413 aa16.59■□□□□ 0.25
PTPRN-202ENST00000409251 BCL2L13Q9BXK5 485 aa16.59■□□□□ 0.25
PTPRN-202ENST00000409251 UPF2Q9HAU5 1272 aaKnown RBP16.59■□□□□ 0.25
PTPRN-202ENST00000409251 FOXD4L1Q9NU39 408 aa16.58■□□□□ 0.25
PTPRN-202ENST00000409251 INO80Q9ULG1 1556 aaPredicted RBP16.58■□□□□ 0.25
PTPRN-202ENST00000409251 PTPRTO14522 1441 aa16.58■□□□□ 0.24
PTPRN-202ENST00000409251 GGNBP2Q9H3C7 697 aa16.58■□□□□ 0.24
PTPRN-202ENST00000409251 CEP152O94986 1710 aa16.58■□□□□ 0.24
PTPRN-202ENST00000409251 GOLGA6L3A6NEY3 463 aa16.57■□□□□ 0.24
PTPRN-202ENST00000409251 MAGI2Q86UL8 1455 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms