RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 ATP1B4Q9UN42 357 aaPredicted RBP8.88□□□□□ -0.99
HMGB3P18-201ENST00000406327 ADGRG1Q9Y653 693 aa8.88□□□□□ -0.99
HMGB3P18-201ENST00000406327 ONECUT3O60422 494 aaPredicted RBP8.87□□□□□ -0.99
HMGB3P18-201ENST00000406327 PHOX2BQ99453 314 aa8.87□□□□□ -0.99
HMGB3P18-201ENST00000406327 A6NJR5 290 aa8.86□□□□□ -0.99
HMGB3P18-201ENST00000406327 UBTFP17480 764 aaKnown RBP8.86□□□□□ -0.99
HMGB3P18-201ENST00000406327 THSD4Q6ZMP0 1018 aa8.86□□□□□ -0.99
HMGB3P18-201ENST00000406327 SLC4A5Q9BY07 1137 aa8.86□□□□□ -0.99
HMGB3P18-201ENST00000406327 PRSS12P56730 875 aa8.85□□□□□ -0.99
HMGB3P18-201ENST00000406327 TTC13Q8NBP0 860 aa8.85□□□□□ -0.99
HMGB3P18-201ENST00000406327 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.84□□□□□ -0.99
HMGB3P18-201ENST00000406327 GOLGA8CPA6NN73 597 aa8.83□□□□□ -1
HMGB3P18-201ENST00000406327 MCM6Q14566 821 aa8.83□□□□□ -1
HMGB3P18-201ENST00000406327 BHMG1C9JSJ3 638 aaPredicted RBP8.82□□□□□ -1
HMGB3P18-201ENST00000406327 CDCA7LQ96GN5 454 aa8.82□□□□□ -1
HMGB3P18-201ENST00000406327 ADAM33Q9BZ11 813 aa8.82□□□□□ -1
HMGB3P18-201ENST00000406327 RAD21O60216 631 aa8.81□□□□□ -1
HMGB3P18-201ENST00000406327 CLK2P49760 499 aaKnown RBP8.81□□□□□ -1
HMGB3P18-201ENST00000406327 FAM161AQ3B820 660 aa8.81□□□□□ -1
HMGB3P18-201ENST00000406327 SULF1Q8IWU6 871 aa8.81□□□□□ -1
HMGB3P18-201ENST00000406327 WNT2BQ93097 391 aa8.81□□□□□ -1
HMGB3P18-201ENST00000406327 MYSM1Q5VVJ2 828 aa8.8□□□□□ -1
HMGB3P18-201ENST00000406327 BCL2L12Q9HB09 334 aa8.8□□□□□ -1
HMGB3P18-201ENST00000406327 APBB1O00213 710 aa8.79□□□□□ -1
HMGB3P18-201ENST00000406327 MRPL50Q8N5N7 158 aaKnown RBP8.79□□□□□ -1
HMGB3P18-201ENST00000406327 POLR3EQ9NVU0 708 aa8.79□□□□□ -1
HMGB3P18-201ENST00000406327 SPDYE5A6NIY4 337 aa8.78□□□□□ -1
HMGB3P18-201ENST00000406327 NBPF26B4DH59 902 aa8.78□□□□□ -1
HMGB3P18-201ENST00000406327 TRAK2O60296 914 aa8.78□□□□□ -1
HMGB3P18-201ENST00000406327 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.78□□□□□ -1
HMGB3P18-201ENST00000406327 TBC1D2Q9BYX2 928 aa8.78□□□□□ -1
HMGB3P18-201ENST00000406327 PPP1R3GB7ZBB8 358 aa8.77□□□□□ -1.01
HMGB3P18-201ENST00000406327 PTPREP23469 700 aa8.77□□□□□ -1.01
HMGB3P18-201ENST00000406327 BANK1Q8NDB2 785 aa8.77□□□□□ -1.01
HMGB3P18-201ENST00000406327 DNAJB2P25686 324 aa8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 Q6ZNB5 142 aa8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 PROSER2Q86WR7 435 aaPredicted RBP8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 PROCA1Q8NCQ7 364 aaPredicted RBP8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 NLRP7Q8WX94 980 aa8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 ARID3AQ99856 593 aa8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 ZBED2Q9BTP6 218 aa8.76□□□□□ -1.01
HMGB3P18-201ENST00000406327 RCCD1A6NED2 376 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 TUSC1Q2TAM9 212 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 TMEM259Q4ZIN3 620 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 PACS2Q86VP3 889 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 CLUAP1Q96AJ1 413 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 NBPF3Q9H094 633 aa8.75□□□□□ -1.01
HMGB3P18-201ENST00000406327 NUTM1Q86Y26 1132 aa8.74□□□□□ -1.01
HMGB3P18-201ENST00000406327 ARID3CA6NKF2 412 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 CD46P15529 392 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 GJA5P36382 358 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 RSPH4AQ5TD94 716 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 WWC1Q8IX03 1113 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 EYA1Q99502 592 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 C1orf115Q9H7X2 142 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 PRM3Q9NNZ6 103 aa8.73□□□□□ -1.01
HMGB3P18-201ENST00000406327 RFC5P40937 340 aa8.72□□□□□ -1.01
HMGB3P18-201ENST00000406327 PPP2R2DQ66LE6 453 aa8.72□□□□□ -1.01
HMGB3P18-201ENST00000406327 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
HMGB3P18-201ENST00000406327 TRIM6-TRIM34B2RNG4 842 aa8.71□□□□□ -1.02
HMGB3P18-201ENST00000406327 ITGBL1O95965 494 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P18-201ENST00000406327 COL9A1P20849 921 aa8.71□□□□□ -1.02
HMGB3P18-201ENST00000406327 NUDT18Q6ZVK8 323 aa8.71□□□□□ -1.02
HMGB3P18-201ENST00000406327 SOCS7O14512 581 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 SPTLC1O15269 473 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 SPIRE2Q8WWL2 714 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 TMEM134Q9H6X4 195 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 TSKSQ9UJT2 592 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 PNMA3Q9UL41 463 aa8.7□□□□□ -1.02
HMGB3P18-201ENST00000406327 DDX11L8A8MPP1 907 aa8.69□□□□□ -1.02
HMGB3P18-201ENST00000406327 TATDN2Q93075 761 aa8.69□□□□□ -1.02
HMGB3P18-201ENST00000406327 CCDC82Q8N4S0 544 aa8.68□□□□□ -1.02
HMGB3P18-201ENST00000406327 CCDC97Q96F63 343 aaPredicted RBP8.68□□□□□ -1.02
HMGB3P18-201ENST00000406327 FAM198AQ9UFP1 575 aa8.68□□□□□ -1.02
HMGB3P18-201ENST00000406327 SERPINA10Q9UK55 444 aa8.68□□□□□ -1.02
HMGB3P18-201ENST00000406327 SLC4A3P48751 1232 aa8.67□□□□□ -1.02
HMGB3P18-201ENST00000406327 USP46P62068 366 aa8.67□□□□□ -1.02
HMGB3P18-201ENST00000406327 RSBN1LQ6PCB5 846 aaPredicted RBP8.67□□□□□ -1.02
HMGB3P18-201ENST00000406327 ANKK1Q8NFD2 765 aa8.67□□□□□ -1.02
HMGB3P18-201ENST00000406327 LIMD1Q9UGP4 676 aa8.67□□□□□ -1.02
HMGB3P18-201ENST00000406327 FNBP4Q8N3X1 1017 aaPredicted RBP8.66□□□□□ -1.02
HMGB3P18-201ENST00000406327 RDH13Q8NBN7 331 aa8.66□□□□□ -1.02
HMGB3P18-201ENST00000406327 COG6Q9Y2V7 657 aa8.66□□□□□ -1.02
HMGB3P18-201ENST00000406327 LAPTM4AQ15012 233 aa8.65□□□□□ -1.02
HMGB3P18-201ENST00000406327 PRPF38BQ5VTL8 546 aaKnown RBP8.65□□□□□ -1.02
HMGB3P18-201ENST00000406327 NYAP1Q6ZVC0 841 aa8.64□□□□□ -1.03
HMGB3P18-201ENST00000406327 POM121Q96HA1 1249 aa8.64□□□□□ -1.03
HMGB3P18-201ENST00000406327 KDM4AO75164 1064 aa8.63□□□□□ -1.03
HMGB3P18-201ENST00000406327 HDGFP51858 240 aaKnown RBP8.63□□□□□ -1.03
HMGB3P18-201ENST00000406327 RABGEF1Q9UJ41 708 aa8.63□□□□□ -1.03
HMGB3P18-201ENST00000406327 ZNF777Q9ULD5 760 aaPredicted RBP8.63□□□□□ -1.03
HMGB3P18-201ENST00000406327 MOXD2PA6NHM9 499 aa8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 NUTM2BA6NNL0 878 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 NUTM2EB1AL46 878 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 PDIA4P13667 645 aaKnown RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 NUTM2DQ5VT03 806 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 NUTM2AQ8IVF1 878 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 SNRKQ9NRH2 765 aa8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 ZNF330Q9Y3S2 320 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P18-201ENST00000406327 LILRB3O75022 631 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms