RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 UHRF1BP1Q6BDS2 1440 aa6.31□□□□□ -1.4
SMAD4-202ENST00000398417 RWDD1Q9H446 243 aaPredicted RBP6.31□□□□□ -1.4
SMAD4-202ENST00000398417 PDZRN3Q9UPQ7 1066 aa6.31□□□□□ -1.4
SMAD4-202ENST00000398417 PARD3Q8TEW0 1356 aa6.31□□□□□ -1.4
SMAD4-202ENST00000398417 MTHFSP49914 203 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 RUNDC1Q96C34 613 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 LRPPRCP42704 1394 aaKnown RBP6.3□□□□□ -1.4
SMAD4-202ENST00000398417 IGHDP01880 384 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 EXOSC9Q06265 439 aaKnown RBP6.3□□□□□ -1.4
SMAD4-202ENST00000398417 RALGAPBQ86X10 1494 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 BECN1Q14457 450 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 TRAPPC8Q9Y2L5 1435 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 ESF1Q9H501 851 aaKnown RBP6.3□□□□□ -1.4
SMAD4-202ENST00000398417 SMC4Q9NTJ3 1288 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 ADAMTS12P58397 1594 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 PMFBP1Q8TBY8 1022 aa6.3□□□□□ -1.4
SMAD4-202ENST00000398417 TSR2Q969E8 191 aaKnown RBP6.3□□□□□ -1.4
SMAD4-202ENST00000398417 HDGFL2Q7Z4V5 671 aaPredicted RBP6.3□□□□□ -1.4
SMAD4-202ENST00000398417 SOX12O15370 315 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.29□□□□□ -1.4
SMAD4-202ENST00000398417 PLEKHH1Q9ULM0 1364 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 AMER1Q5JTC6 1135 aaPredicted RBP6.29□□□□□ -1.4
SMAD4-202ENST00000398417 NFKBIBQ15653 356 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 PRAG1Q86YV5 1406 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 IL27Q8NEV9 243 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 FOXD4L1Q9NU39 408 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 NUP160Q12769 1436 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 PLEKHG5O94827 1062 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 ADGRL2O95490 1459 aa6.29□□□□□ -1.4
SMAD4-202ENST00000398417 ZBTB7CA1YPR0 619 aa6.28□□□□□ -1.4
SMAD4-202ENST00000398417 EIF5BO60841 1220 aaKnown RBP6.28□□□□□ -1.4
SMAD4-202ENST00000398417 CARD14Q9BXL6 1004 aa6.28□□□□□ -1.4
SMAD4-202ENST00000398417 PPP1R1BQ9UD71 204 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-202ENST00000398417 SUPT6HQ7KZ85 1726 aaKnown RBP6.28□□□□□ -1.4
SMAD4-202ENST00000398417 SAMD9Q5K651 1589 aa6.28□□□□□ -1.4
SMAD4-202ENST00000398417 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-202ENST00000398417 STAC3Q96MF2 364 aa6.28□□□□□ -1.4
SMAD4-202ENST00000398417 ZKSCAN2Q63HK3 967 aa6.27□□□□□ -1.4
SMAD4-202ENST00000398417 WWC1Q8IX03 1113 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 ABCC10Q5T3U5 1492 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 VGFO15240 615 aaPredicted RBP6.27□□□□□ -1.41
SMAD4-202ENST00000398417 CFAP43Q8NDM7 1665 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 KIAA0556O60303 1618 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 MYH16Q9H6N6 1097 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 CGNL1Q0VF96 1302 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 FRAT2O75474 233 aaPredicted RBP6.27□□□□□ -1.41
SMAD4-202ENST00000398417 APBB1O00213 710 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 RIPK4P57078 832 aa6.27□□□□□ -1.41
SMAD4-202ENST00000398417 MBD5Q9P267 1494 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 RAPGEF3O95398 923 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 EVC2Q86UK5 1308 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 ABCA5Q8WWZ7 1642 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 DIAPH1O60610 1272 aaKnown RBP6.26□□□□□ -1.41
SMAD4-202ENST00000398417 DZIP1LQ8IYY4 767 aaKnown RBP6.26□□□□□ -1.41
SMAD4-202ENST00000398417 PLCH2O75038 1416 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 A2MP01023 1474 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 NUTM2FA1L443 756 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 GSE1Q14687 1217 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 BRPF3Q9ULD4 1205 aa6.26□□□□□ -1.41
SMAD4-202ENST00000398417 C8orf34Q49A92 452 aa6.25□□□□□ -1.41
SMAD4-202ENST00000398417 GZF1Q9H116 711 aaPredicted RBP6.25□□□□□ -1.41
SMAD4-202ENST00000398417 HSP90AA1P07900 732 aaKnown RBP6.25□□□□□ -1.41
SMAD4-202ENST00000398417 HMOX1P09601 288 aa6.25□□□□□ -1.41
SMAD4-202ENST00000398417 PLA2R1Q13018 1463 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 TERF2IPQ9NYB0 399 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 C14orf93Q9H972 538 aaKnown RBP6.24□□□□□ -1.41
SMAD4-202ENST00000398417 GPRASP1Q5JY77 1395 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 RARSP54136 660 aaKnown RBP6.24□□□□□ -1.41
SMAD4-202ENST00000398417 PRAM1Q96QH2 718 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 NSD3Q9BZ95 1437 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 NOS1P29475 1434 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 FBLN1P23142 703 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 CALRP27797 417 aaKnown RBP6.24□□□□□ -1.41
SMAD4-202ENST00000398417 PDE3AQ14432 1141 aa6.24□□□□□ -1.41
SMAD4-202ENST00000398417 NOB1Q9ULX3 412 aaKnown RBP6.23□□□□□ -1.41
SMAD4-202ENST00000398417 SCAF11Q99590 1463 aaKnown RBP6.23□□□□□ -1.41
SMAD4-202ENST00000398417 HSP90AB1P08238 724 aaKnown RBP6.23□□□□□ -1.41
SMAD4-202ENST00000398417 FBXO31Q5XUX0 539 aaPredicted RBP6.23□□□□□ -1.41
SMAD4-202ENST00000398417 CABP1Q9NZU7 370 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 HSCBQ8IWL3 235 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 C1orf115Q9H7X2 142 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 KDM2BQ8NHM5 1336 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 NCBP3Q53F19 620 aaKnown RBP6.23□□□□□ -1.41
SMAD4-202ENST00000398417 CYB5RLQ6IPT4 315 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 OSCARQ8IYS5 282 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 USP35Q9P2H5 1018 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 RAPGEF6Q8TEU7 1601 aa6.23□□□□□ -1.41
SMAD4-202ENST00000398417 IPO8O15397 1037 aaKnown RBP6.22□□□□□ -1.41
SMAD4-202ENST00000398417 THUMPD2Q9BTF0 503 aaKnown RBP6.22□□□□□ -1.41
SMAD4-202ENST00000398417 FAM135AQ9P2D6 1515 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 SEC24BO95487 1268 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 RLBP1P12271 317 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 SHANK2Q9UPX8 1470 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 CDK11BP21127 795 aaKnown RBP6.22□□□□□ -1.41
SMAD4-202ENST00000398417 PRKAR2BP31323 418 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 WDR63Q8IWG1 891 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 LNPKQ9C0E8 428 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 PNNQ9H307 717 aaKnown RBP6.22□□□□□ -1.41
SMAD4-202ENST00000398417 ANKRD45Q5TZF3 282 aa6.22□□□□□ -1.41
SMAD4-202ENST00000398417 CDK19Q9BWU1 502 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms