RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 CLGNO14967 610 aa8.72□□□□□ -1.01
TM9SF4-202ENST00000398022 CCER2I3L3R5 266 aa8.71□□□□□ -1.01
TM9SF4-202ENST00000398022 DENND4BO75064 1496 aaPredicted RBP8.71□□□□□ -1.01
TM9SF4-202ENST00000398022 IL27Q8NEV9 243 aa8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 C1orf115Q9H7X2 142 aa8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 STRCP1A6NGW2 1772 aa8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 FOXD4L5Q5VV16 416 aaPredicted RBP8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 FOXD4L4Q8WXT5 416 aaPredicted RBP8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 SIN3AQ96ST3 1273 aa8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 PHF14O94880 888 aa8.7□□□□□ -1.02
TM9SF4-202ENST00000398022 TONSLQ96HA7 1378 aa8.69□□□□□ -1.02
TM9SF4-202ENST00000398022 MLH3Q9UHC1 1453 aa8.69□□□□□ -1.02
TM9SF4-202ENST00000398022 POLR1AO95602 1720 aaPredicted RBP8.69□□□□□ -1.02
TM9SF4-202ENST00000398022 RAPGEF3O95398 923 aa8.69□□□□□ -1.02
TM9SF4-202ENST00000398022 ZNF622Q969S3 477 aaKnown RBP eCLIP8.69□□□□□ -1.021e-6■■□□□ 11.5
TM9SF4-202ENST00000398022 NEURL4Q96JN8 1562 aa8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 P3H3Q8IVL6 736 aa8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 XIRP1Q702N8 1843 aaKnown RBP8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 KDM4AO75164 1064 aa8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 PPP1R15AO75807 674 aaPredicted RBP8.68□□□□□ -1.02
TM9SF4-202ENST00000398022 VGFO15240 615 aaPredicted RBP8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 FBXO41Q8TF61 875 aa8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 C9orf84Q5VXU9 1444 aa8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 RRP9O43818 475 aaKnown RBP8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 ATP10AO60312 1499 aa8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 CLTCQ00610 1675 aaKnown RBP8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 KCNH8Q96L42 1107 aa8.67□□□□□ -1.02
TM9SF4-202ENST00000398022 IQSEC2Q5JU85 1478 aa8.66□□□□□ -1.02
TM9SF4-202ENST00000398022 FYCO1Q9BQS8 1478 aa8.66□□□□□ -1.02
TM9SF4-202ENST00000398022 ZNF518AQ6AHZ1 1483 aa8.65□□□□□ -1.03
TM9SF4-202ENST00000398022 FMN1Q68DA7 1419 aa8.65□□□□□ -1.03
TM9SF4-202ENST00000398022 CASKIN1Q8WXD9 1431 aa8.65□□□□□ -1.03
TM9SF4-202ENST00000398022 SETD1BQ9UPS6 1966 aaKnown RBP8.65□□□□□ -1.03
TM9SF4-202ENST00000398022 SUPT6HQ7KZ85 1726 aaKnown RBP8.64□□□□□ -1.03
TM9SF4-202ENST00000398022 MTUS2Q5JR59 1369 aa8.64□□□□□ -1.03
TM9SF4-202ENST00000398022 ZC3H13Q5T200 1668 aaKnown RBP8.64□□□□□ -1.03
TM9SF4-202ENST00000398022 HSP90AB4PQ58FF6 505 aa8.64□□□□□ -1.03
TM9SF4-202ENST00000398022 PLEKHD1A6NEE1 506 aa8.63□□□□□ -1.03
TM9SF4-202ENST00000398022 MROH1Q8NDA8 1641 aa8.63□□□□□ -1.03
TM9SF4-202ENST00000398022 TRIM52Q96A61 297 aa8.63□□□□□ -1.03
TM9SF4-202ENST00000398022 BRPF1P55201 1214 aaPredicted RBP8.62□□□□□ -1.03
TM9SF4-202ENST00000398022 CALD1Q05682 793 aaKnown RBP8.62□□□□□ -1.03
TM9SF4-202ENST00000398022 TCOF1Q13428 1488 aaKnown RBP8.62□□□□□ -1.03
TM9SF4-202ENST00000398022 AXDND1Q5T1B0 1012 aaPredicted RBP8.62□□□□□ -1.03
TM9SF4-202ENST00000398022 FGD6Q6ZV73 1430 aa8.62□□□□□ -1.03
TM9SF4-202ENST00000398022 DNMT1P26358 1616 aaKnown RBP8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 TROQ12816 1431 aaPredicted RBP8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 NCOA1Q15788 1441 aa8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 HSP90AA2PQ14568 343 aaPredicted RBP8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 HIRIP3Q9BW71 556 aaPredicted RBP8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 CCDC18Q5T9S5 1454 aa8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 TRAPPC8Q9Y2L5 1435 aa8.61□□□□□ -1.03
TM9SF4-202ENST00000398022 PTPRTO14522 1441 aa8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 SPATA31D1Q6ZQQ2 1576 aa8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 RNF17Q9BXT8 1623 aaKnown RBP8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 VWDEQ8N2E2 1590 aa8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 MMP14P50281 582 aa8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 ANP32BQ92688 251 aaKnown RBP8.6□□□□□ -1.03
TM9SF4-202ENST00000398022 EXOC8Q8IYI6 725 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 PRDM4Q9UKN5 801 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 SCAPERQ9BY12 1400 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 FAM9BQ8IZU0 186 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 DEPDC5O75140 1603 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 SYCP2Q9BX26 1530 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 HFM1A2PYH4 1435 aa8.59□□□□□ -1.03
TM9SF4-202ENST00000398022 CEP170BQ9Y4F5 1589 aaPredicted RBP8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 ARID3CA6NKF2 412 aa8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 TMTC2Q8N394 836 aa8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 LAS1LQ9Y4W2 734 aaKnown RBP8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 CAMSAP1Q5T5Y3 1602 aa8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 E9PSI1 815 aa8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 MBD5Q9P267 1494 aa8.58□□□□□ -1.04
TM9SF4-202ENST00000398022 NPM3O75607 178 aaKnown RBP8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 CROCC2H7BZ55 1655 aa8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 ATP7AQ04656 1500 aa8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 HNRNPUQ00839 825 aaKnown RBP eCLIP8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 HDAC5Q9UQL6 1122 aa8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 RBM19Q9Y4C8 960 aaKnown RBP8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 GPATCH8Q9UKJ3 1502 aaKnown RBP8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 FOXD1Q16676 465 aa8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 NPATQ14207 1427 aa8.57□□□□□ -1.04
TM9SF4-202ENST00000398022 PLA2R1Q13018 1463 aa8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 FAM135AQ9P2D6 1515 aa8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 IRX3P78415 501 aaPredicted RBP8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 ARHGAP5Q13017 1502 aa8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 MYOM3Q5VTT5 1437 aa8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 C11orf95C9JLR9 678 aaPredicted RBP8.56□□□□□ -1.04
TM9SF4-202ENST00000398022 MAST1Q9Y2H9 1570 aa8.55□□□□□ -1.04
TM9SF4-202ENST00000398022 CAMSAP2Q08AD1 1489 aa8.55□□□□□ -1.04
TM9SF4-202ENST00000398022 LOC102724159A0A0B4J2E5 919 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 APPP05067 770 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 PWP2Q15269 919 aaKnown RBP8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 PLCD3Q8N3E9 789 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 EIF4G2P78344 907 aaKnown RBP eCLIP8.54□□□□□ -1.042e-10■■■■□ 24
TM9SF4-202ENST00000398022 PTPRKQ15262 1439 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 FANCIQ9NVI1 1328 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 UBR1Q8IWV7 1749 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 PTPN23Q9H3S7 1636 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 NCOA2Q15596 1464 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms