RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 WIZO95785 1651 aa12.52□□□□□ -0.4
LIMCH1-203ENST00000396595 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-203ENST00000396595 ZKSCAN1P17029 563 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-203ENST00000396595 ROCK1Q13464 1354 aa12.52□□□□□ -0.41
LIMCH1-203ENST00000396595 TPD52L1Q16890 204 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-203ENST00000396595 MTERF4Q7Z6M4 381 aaKnown RBP12.52□□□□□ -0.41
LIMCH1-203ENST00000396595 CPLX2Q6PUV4 134 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 CCDC7Q96M83 1385 aa12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 COG3Q96JB2 828 aa12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 NUTM2DQ5VT03 806 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 LRRFIP1Q32MZ4 808 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 FOXD4L6Q3SYB3 417 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 FOXD4L3Q6VB84 417 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 CEP89Q96ST8 783 aa12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 VGFO15240 615 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-203ENST00000396595 RDXP35241 583 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-203ENST00000396595 LTV1Q96GA3 475 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-203ENST00000396595 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
LIMCH1-203ENST00000396595 CWC15Q9P013 229 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-203ENST00000396595 TMX4Q9H1E5 349 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 FAM43AQ8N2R8 423 aa12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 CNTLNQ9NXG0 1405 aa12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 CCDC70Q6NSX1 233 aa12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 CCAR2Q8N163 923 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 PES1O00541 588 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 NFKBIBQ15653 356 aa12.49□□□□□ -0.41
LIMCH1-203ENST00000396595 AKAP17AQ02040 695 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 RUNDC1Q96C34 613 aa12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 DIAPH1O60610 1272 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 INTS3Q68E01 1043 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 MCTP1Q6DN14 999 aa12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 JPH4Q96JJ6 628 aa12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 C22orf23Q9BZE7 217 aa12.48□□□□□ -0.41
LIMCH1-203ENST00000396595 KIF7Q2M1P5 1343 aa12.47□□□□□ -0.41
LIMCH1-203ENST00000396595 MARCH6O60337 910 aa12.47□□□□□ -0.41
LIMCH1-203ENST00000396595 SYNE3Q6ZMZ3 975 aa12.47□□□□□ -0.41
LIMCH1-203ENST00000396595 TPM2P07951 284 aa12.47□□□□□ -0.41
LIMCH1-203ENST00000396595 NCBP3Q53F19 620 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-203ENST00000396595 MRE11P49959 708 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 MEX3CQ5U5Q3 659 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 RNF20Q5VTR2 975 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 NEXNQ0ZGT2 675 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 TEFQ10587 303 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 ZNF592Q92610 1267 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 FRAT2O75474 233 aaPredicted RBP12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 NEFHP12036 1026 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 STAC3Q96MF2 364 aa12.46□□□□□ -0.41
LIMCH1-203ENST00000396595 RUSC2Q8N2Y8 1516 aa12.46□□□□□ -0.42
LIMCH1-203ENST00000396595 RIPK4P57078 832 aa12.46□□□□□ -0.42
LIMCH1-203ENST00000396595 BICD2Q8TD16 824 aa12.46□□□□□ -0.42
LIMCH1-203ENST00000396595 ANO2Q9NQ90 1003 aa12.46□□□□□ -0.42
LIMCH1-203ENST00000396595 IPO7O95373 1038 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-203ENST00000396595 C1orf141Q5JVX7 400 aa12.45□□□□□ -0.42
LIMCH1-203ENST00000396595 TRHP20396 242 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-203ENST00000396595 BRD4O60885 1362 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-203ENST00000396595 IFIT2P09913 472 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 TRIM29Q14134 588 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 C9orf78Q9NZ63 289 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 SMC3Q9UQE7 1217 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 MYOM3Q5VTT5 1437 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 ANKRD20A12PQ8NF67 263 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 CCDC191Q8NCU4 936 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 MIA2Q96PC5 1412 aa12.44□□□□□ -0.42
LIMCH1-203ENST00000396595 NUTM2FA1L443 756 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 GNAI1P63096 354 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 LNPKQ9C0E8 428 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 HOOK1Q9UJC3 728 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 CPLX1O14810 134 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 HSP90AB4PQ58FF6 505 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 HOMER1Q86YM7 354 aa12.43□□□□□ -0.42
LIMCH1-203ENST00000396595 GTF2E1P29083 439 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 SASS6Q6UVJ0 657 aa12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 VPS37CA5D8V6 355 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 FGD6Q6ZV73 1430 aa12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 CDC45O75419 566 aa12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 HSP90AB3PQ58FF7 597 aa12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 CCDC47Q96A33 483 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-203ENST00000396595 MINK1Q8N4C8 1332 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-203ENST00000396595 CCDC9Q9Y3X0 531 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-203ENST00000396595 DDX58O95786 925 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-203ENST00000396595 NASPP49321 788 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 CCDC73Q6ZRK6 1079 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 CCDC39Q9UFE4 941 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 H0YHG0 523 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 FKBP5Q13451 457 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 G3V3G9 751 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 DCAF8Q5TAQ9 597 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 ARGLU1Q9NWB6 273 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 ERC2O15083 957 aa12.4□□□□□ -0.42
LIMCH1-203ENST00000396595 EIF2S2P20042 333 aaKnown RBP12.4□□□□□ -0.43
LIMCH1-203ENST00000396595 G3BP1Q13283 466 aaKnown RBP eCLIP12.4□□□□□ -0.43
LIMCH1-203ENST00000396595 TRDNQ13061 729 aa12.39□□□□□ -0.43
LIMCH1-203ENST00000396595 PANK1Q8TE04 598 aa12.39□□□□□ -0.43
LIMCH1-203ENST00000396595 CUX1P39880 1505 aa12.39□□□□□ -0.43
LIMCH1-203ENST00000396595 VPS53Q5VIR6 699 aa12.39□□□□□ -0.43
LIMCH1-203ENST00000396595 IFT57Q9NWB7 429 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 TAF3Q5VWG9 929 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 TTC5Q8N0Z6 440 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 TRAK2O60296 914 aa12.38□□□□□ -0.43
LIMCH1-203ENST00000396595 MBD3O95983 291 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms