RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 ROCK1Q13464 1354 aa16.99■□□□□ 0.31
COL4A3-202ENST00000396578 ZBED9Q6R2W3 1325 aa16.99■□□□□ 0.31
COL4A3-202ENST00000396578 RNF20Q5VTR2 975 aa16.99■□□□□ 0.31
COL4A3-202ENST00000396578 CRBNQ96SW2 442 aa16.98■□□□□ 0.31
COL4A3-202ENST00000396578 BAZ1AQ9NRL2 1556 aaPredicted RBP16.98■□□□□ 0.31
COL4A3-202ENST00000396578 NUCB2P80303 420 aa16.98■□□□□ 0.31
COL4A3-202ENST00000396578 NOL10Q9BSC4 688 aaKnown RBP16.98■□□□□ 0.31
COL4A3-202ENST00000396578 NAT10Q9H0A0 1025 aaKnown RBP16.98■□□□□ 0.31
COL4A3-202ENST00000396578 RDXP35241 583 aaKnown RBP16.98■□□□□ 0.31
COL4A3-202ENST00000396578 NACADO15069 1562 aa16.97■□□□□ 0.31
COL4A3-202ENST00000396578 RRP7AQ9Y3A4 280 aaKnown RBP16.97■□□□□ 0.31
COL4A3-202ENST00000396578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL4A3-202ENST00000396578 NGDNQ8NEJ9 315 aaKnown RBP16.97■□□□□ 0.31
COL4A3-202ENST00000396578 H0YHG0 523 aa16.97■□□□□ 0.31
COL4A3-202ENST00000396578 CCDC39Q9UFE4 941 aa16.96■□□□□ 0.31
COL4A3-202ENST00000396578 PLIN1O60240 522 aa16.96■□□□□ 0.31
COL4A3-202ENST00000396578 TRIM34Q9BYJ4 488 aa16.96■□□□□ 0.31
COL4A3-202ENST00000396578 BCL2L13Q9BXK5 485 aa16.96■□□□□ 0.31
COL4A3-202ENST00000396578 CCDC66A2RUB6 948 aa16.95■□□□□ 0.3
COL4A3-202ENST00000396578 ODF2Q5BJF6 829 aa16.95■□□□□ 0.3
COL4A3-202ENST00000396578 TRDNQ13061 729 aa16.95■□□□□ 0.3
COL4A3-202ENST00000396578 CT47A1Q5JQC4 288 aaPredicted RBP16.95■□□□□ 0.3
COL4A3-202ENST00000396578 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
COL4A3-202ENST00000396578 CCDC173Q0VFZ6 552 aa16.95■□□□□ 0.3
COL4A3-202ENST00000396578 ERCC4Q92889 916 aaPredicted RBP16.94■□□□□ 0.3
COL4A3-202ENST00000396578 SMC3Q9UQE7 1217 aa16.94■□□□□ 0.3
COL4A3-202ENST00000396578 MYO6Q9UM54 1294 aa16.94■□□□□ 0.3
COL4A3-202ENST00000396578 NASPP49321 788 aaPredicted RBP16.94■□□□□ 0.3
COL4A3-202ENST00000396578 APPP05067 770 aa16.94■□□□□ 0.3
COL4A3-202ENST00000396578 NEXNQ0ZGT2 675 aa16.94■□□□□ 0.3
COL4A3-202ENST00000396578 CARMIL2Q6F5E8 1435 aa16.94■□□□□ 0.3
COL4A3-202ENST00000396578 LTV1Q96GA3 475 aaPredicted RBP16.94■□□□□ 0.3
COL4A3-202ENST00000396578 C9orf78Q9NZ63 289 aaPredicted RBP16.94■□□□□ 0.3
COL4A3-202ENST00000396578 C1orf141Q5JVX7 400 aa16.93■□□□□ 0.3
COL4A3-202ENST00000396578 CCDC73Q6ZRK6 1079 aa16.93■□□□□ 0.3
COL4A3-202ENST00000396578 EXOC6Q8TAG9 804 aa16.93■□□□□ 0.3
COL4A3-202ENST00000396578 FBXW7Q969H0 707 aa16.93■□□□□ 0.3
COL4A3-202ENST00000396578 EPS15P42566 896 aa16.93■□□□□ 0.3
COL4A3-202ENST00000396578 INTS3Q68E01 1043 aaKnown RBP16.93■□□□□ 0.3
COL4A3-202ENST00000396578 ERICH2A1L162 156 aa16.92■□□□□ 0.3
COL4A3-202ENST00000396578 CAGE1Q8TC20 777 aa16.92■□□□□ 0.3
COL4A3-202ENST00000396578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.92■□□□□ 0.3
COL4A3-202ENST00000396578 VPS37CA5D8V6 355 aaPredicted RBP16.92■□□□□ 0.3
COL4A3-202ENST00000396578 OLFM4Q6UX06 510 aa16.92■□□□□ 0.3
COL4A3-202ENST00000396578 IFIT2P09913 472 aaKnown RBP16.92■□□□□ 0.3
COL4A3-202ENST00000396578 CTDP1Q9Y5B0 961 aaPredicted RBP16.92■□□□□ 0.3
COL4A3-202ENST00000396578 NFXL1Q6ZNB6 911 aa16.91■□□□□ 0.3
COL4A3-202ENST00000396578 RAD21O60216 631 aa16.91■□□□□ 0.3
COL4A3-202ENST00000396578 COG6Q9Y2V7 657 aa16.91■□□□□ 0.3
COL4A3-202ENST00000396578 CCDC43Q96MW1 224 aaKnown RBP16.91■□□□□ 0.3
COL4A3-202ENST00000396578 SAFBQ15424 915 aaKnown RBP eCLIP16.91■□□□□ 0.3
COL4A3-202ENST00000396578 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
COL4A3-202ENST00000396578 R3HCC1Q9Y3T6 440 aaKnown RBP16.9■□□□□ 0.3
COL4A3-202ENST00000396578 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL4A3-202ENST00000396578 EID1Q9Y6B2 187 aa16.9■□□□□ 0.3
COL4A3-202ENST00000396578 SOGA1O94964 1423 aa16.9■□□□□ 0.3
COL4A3-202ENST00000396578 HSP90AB2PQ58FF8 381 aa16.89■□□□□ 0.29
COL4A3-202ENST00000396578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.89■□□□□ 0.29
COL4A3-202ENST00000396578 UACAQ9BZF9 1416 aa16.89■□□□□ 0.29
COL4A3-202ENST00000396578 MRE11P49959 708 aa16.89■□□□□ 0.29
COL4A3-202ENST00000396578 LETM1O95202 739 aaPredicted RBP16.88■□□□□ 0.29
COL4A3-202ENST00000396578 ELL2O00472 640 aaPredicted RBP16.88■□□□□ 0.29
COL4A3-202ENST00000396578 CNKSR2Q8WXI2 1034 aa16.88■□□□□ 0.29
COL4A3-202ENST00000396578 PANK3Q9H999 370 aa16.88■□□□□ 0.29
COL4A3-202ENST00000396578 KRI1Q8N9T8 703 aaKnown RBP16.88■□□□□ 0.29
COL4A3-202ENST00000396578 DHX16O60231 1041 aaKnown RBP16.88■□□□□ 0.29
COL4A3-202ENST00000396578 CCDC18Q5T9S5 1454 aa16.88■□□□□ 0.29
COL4A3-202ENST00000396578 ABCC8Q09428 1581 aa16.87■□□□□ 0.29
COL4A3-202ENST00000396578 LEKR1Q6ZMV7 388 aa16.87■□□□□ 0.29
COL4A3-202ENST00000396578 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
COL4A3-202ENST00000396578 PDILTQ8N807 584 aa16.87■□□□□ 0.29
COL4A3-202ENST00000396578 VPS37DQ86XT2 251 aa16.87■□□□□ 0.29
COL4A3-202ENST00000396578 KANK4Q5T7N3 995 aaPredicted RBP16.87■□□□□ 0.29
COL4A3-202ENST00000396578 CCP110O43303 1012 aa16.86■□□□□ 0.29
COL4A3-202ENST00000396578 BCL11BQ9C0K0 894 aaPredicted RBP16.86■□□□□ 0.29
COL4A3-202ENST00000396578 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.86■□□□□ 0.29
COL4A3-202ENST00000396578 OFD1O75665 1012 aa16.85■□□□□ 0.29
COL4A3-202ENST00000396578 C22orf23Q9BZE7 217 aa16.85■□□□□ 0.29
COL4A3-202ENST00000396578 TEFQ10587 303 aa16.85■□□□□ 0.29
COL4A3-202ENST00000396578 CCDC144AA2RUR9 1427 aa16.85■□□□□ 0.29
COL4A3-202ENST00000396578 COG3Q96JB2 828 aa16.85■□□□□ 0.29
COL4A3-202ENST00000396578 BRMS1Q9HCU9 246 aa16.84■□□□□ 0.29
COL4A3-202ENST00000396578 DZIP1LQ8IYY4 767 aaKnown RBP16.84■□□□□ 0.29
COL4A3-202ENST00000396578 ERC2O15083 957 aa16.83■□□□□ 0.29
COL4A3-202ENST00000396578 FOSBP53539 338 aa16.83■□□□□ 0.29
COL4A3-202ENST00000396578 NFKBIBQ15653 356 aa16.83■□□□□ 0.29
COL4A3-202ENST00000396578 TTC5Q8N0Z6 440 aa16.83■□□□□ 0.29
COL4A3-202ENST00000396578 EFCAB2Q5VUJ9 269 aa16.83■□□□□ 0.28
COL4A3-202ENST00000396578 NINLQ9Y2I6 1382 aa16.83■□□□□ 0.28
COL4A3-202ENST00000396578 G3BP1Q13283 466 aaKnown RBP eCLIP16.83■□□□□ 0.28
COL4A3-202ENST00000396578 ZFYVE27Q5T4F4 411 aa16.83■□□□□ 0.28
COL4A3-202ENST00000396578 DDX58O95786 925 aaKnown RBP16.83■□□□□ 0.28
COL4A3-202ENST00000396578 SMARCE1Q969G3 411 aa16.82■□□□□ 0.28
COL4A3-202ENST00000396578 ZRSR2Q15696 482 aaKnown RBP16.82■□□□□ 0.28
COL4A3-202ENST00000396578 EVC2Q86UK5 1308 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 API5Q9BZZ5 524 aaKnown RBP16.81■□□□□ 0.28
COL4A3-202ENST00000396578 KIF3BO15066 747 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 TRAK1Q9UPV9 953 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 NGEFQ8N5V2 710 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 TTLL5Q6EMB2 1281 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms