RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DDX10Q13206 875 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-203ENST00000389856 IDI1Q13907 227 aa25.34■■□□□ 1.65
CCDC88C-203ENST00000389856 TMEM131LA2VDJ0 1609 aa25.33■■□□□ 1.65
CCDC88C-203ENST00000389856 VGFO15240 615 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-203ENST00000389856 CCDC7Q96M83 1385 aa25.31■■□□□ 1.64
CCDC88C-203ENST00000389856 FBXO31Q5XUX0 539 aaPredicted RBP25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 WASHC2AQ641Q2 1341 aa25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 FER1L4A9Z1Z3 1794 aa25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 NBPF1Q3BBV0 1214 aa25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 STAG3Q9UJ98 1225 aa25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 NEXMIFQ5QGS0 1516 aa25.3■■□□□ 1.64
CCDC88C-203ENST00000389856 ZFYVE9O95405 1425 aa25.29■■□□□ 1.64
CCDC88C-203ENST00000389856 EIF3AQ14152 1382 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-203ENST00000389856 IQGAP1P46940 1657 aa25.28■■□□□ 1.64
CCDC88C-203ENST00000389856 SETBP1Q9Y6X0 1596 aa25.27■■□□□ 1.64
CCDC88C-203ENST00000389856 SCAF11Q99590 1463 aaKnown RBP25.27■■□□□ 1.64
CCDC88C-203ENST00000389856 PIK3C2GO75747 1445 aa25.27■■□□□ 1.64
CCDC88C-203ENST00000389856 ADGRF5Q8IZF2 1346 aa25.26■■□□□ 1.63
CCDC88C-203ENST00000389856 MYO5BQ9ULV0 1848 aa25.26■■□□□ 1.63
CCDC88C-203ENST00000389856 ST20-MTHFSA0A0A6YYL1 179 aa25.26■■□□□ 1.63
CCDC88C-203ENST00000389856 KDM5AP29375 1690 aaKnown RBP25.25■■□□□ 1.63
CCDC88C-203ENST00000389856 TNRQ92752 1358 aa25.25■■□□□ 1.63
CCDC88C-203ENST00000389856 SLC24A1O60721 1099 aa25.24■■□□□ 1.63
CCDC88C-203ENST00000389856 YTHDC1Q96MU7 727 aaKnown RBP25.24■■□□□ 1.63
CCDC88C-203ENST00000389856 GTF3C3Q9Y5Q9 886 aa25.23■■□□□ 1.63
CCDC88C-203ENST00000389856 KIF7Q2M1P5 1343 aa25.22■■□□□ 1.63
CCDC88C-203ENST00000389856 C14orf93Q9H972 538 aaKnown RBP25.19■■□□□ 1.62
CCDC88C-203ENST00000389856 A2ML1A8K2U0 1454 aa25.19■■□□□ 1.62
CCDC88C-203ENST00000389856 NLRP1Q9C000 1473 aa25.19■■□□□ 1.62
CCDC88C-203ENST00000389856 CFAP70Q5T0N1 1121 aa25.19■■□□□ 1.62
CCDC88C-203ENST00000389856 C3P01024 1663 aa25.19■■□□□ 1.62
CCDC88C-203ENST00000389856 ANP32CO43423 234 aa25.18■■□□□ 1.62
CCDC88C-203ENST00000389856 HDGFP51858 240 aaKnown RBP25.18■■□□□ 1.62
CCDC88C-203ENST00000389856 C11orf95C9JLR9 678 aaPredicted RBP25.16■■□□□ 1.62
CCDC88C-203ENST00000389856 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.15■■□□□ 1.62
CCDC88C-203ENST00000389856 TMF1P82094 1093 aa25.15■■□□□ 1.62
CCDC88C-203ENST00000389856 CDCA8Q53HL2 280 aa25.13■■□□□ 1.61
CCDC88C-203ENST00000389856 RIMS2Q9UQ26 1411 aa25.12■■□□□ 1.61
CCDC88C-203ENST00000389856 MYO3AQ8NEV4 1616 aa25.11■■□□□ 1.61
CCDC88C-203ENST00000389856 ADGRB1O14514 1584 aa25.1■■□□□ 1.61
CCDC88C-203ENST00000389856 UBR1Q8IWV7 1749 aa25.09■■□□□ 1.61
CCDC88C-203ENST00000389856 TESK2Q96S53 571 aa25.09■■□□□ 1.61
CCDC88C-203ENST00000389856 POLR3GLQ9BT43 218 aa25.08■■□□□ 1.61
CCDC88C-203ENST00000389856 ADAMTSL3P82987 1691 aa25.06■■□□□ 1.6
CCDC88C-203ENST00000389856 RIMS1Q86UR5 1692 aaKnown RBP25.06■■□□□ 1.6
CCDC88C-203ENST00000389856 CCER2I3L3R5 266 aa25.05■■□□□ 1.6
CCDC88C-203ENST00000389856 SBNO2Q9Y2G9 1366 aa25.05■■□□□ 1.6
CCDC88C-203ENST00000389856 NUTM2DQ5VT03 806 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-203ENST00000389856 CENPJQ9HC77 1338 aaPredicted RBP25.02■■□□□ 1.6
CCDC88C-203ENST00000389856 TMEM2Q9UHN6 1383 aa25.01■■□□□ 1.59
CCDC88C-203ENST00000389856 ALKQ9UM73 1620 aa25.01■■□□□ 1.59
CCDC88C-203ENST00000389856 CEBPAP49715 358 aaPredicted RBP25.01■■□□□ 1.59
CCDC88C-203ENST00000389856 DISP3Q9P2K9 1392 aa25■■□□□ 1.59
CCDC88C-203ENST00000389856 QRICH2Q9H0J4 1663 aa24.98■■□□□ 1.59
CCDC88C-203ENST00000389856 ARHGEF28Q8N1W1 1705 aaKnown RBP24.97■■□□□ 1.59
CCDC88C-203ENST00000389856 PELP1Q8IZL8 1130 aaKnown RBP24.97■■□□□ 1.59
CCDC88C-203ENST00000389856 TRAK1Q9UPV9 953 aa24.97■■□□□ 1.59
CCDC88C-203ENST00000389856 TMEM132EQ6IEE7 984 aa24.96■■□□□ 1.59
CCDC88C-203ENST00000389856 THEMISQ8N1K5 641 aaPredicted RBP24.95■■□□□ 1.58
CCDC88C-203ENST00000389856 EID1Q9Y6B2 187 aa24.95■■□□□ 1.58
CCDC88C-203ENST00000389856 SLIT1O75093 1534 aa24.94■■□□□ 1.58
CCDC88C-203ENST00000389856 ASXL1Q8IXJ9 1541 aa24.94■■□□□ 1.58
CCDC88C-203ENST00000389856 YTHDC2Q9H6S0 1430 aaKnown RBP24.94■■□□□ 1.58
CCDC88C-203ENST00000389856 PLPPR3Q6T4P5 718 aa24.92■■□□□ 1.58
CCDC88C-203ENST00000389856 SETD1AO15047 1707 aaKnown RBP24.91■■□□□ 1.58
CCDC88C-203ENST00000389856 CEP170BQ9Y4F5 1589 aaPredicted RBP24.91■■□□□ 1.58
CCDC88C-203ENST00000389856 ARHGAP23Q9P227 1491 aa24.9■■□□□ 1.58
CCDC88C-203ENST00000389856 KTN1Q86UP2 1357 aaKnown RBP24.9■■□□□ 1.58
CCDC88C-203ENST00000389856 DLC1Q96QB1 1528 aa24.9■■□□□ 1.58
CCDC88C-203ENST00000389856 PLEKHG1Q9ULL1 1385 aa24.9■■□□□ 1.58
CCDC88C-203ENST00000389856 NRXN3Q9Y4C0 1643 aa24.9■■□□□ 1.58
CCDC88C-203ENST00000389856 SETD1BQ9UPS6 1966 aaKnown RBP24.89■■□□□ 1.58
CCDC88C-203ENST00000389856 ZNF142P52746 1687 aaPredicted RBP24.89■■□□□ 1.57
CCDC88C-203ENST00000389856 LRPPRCP42704 1394 aaKnown RBP24.88■■□□□ 1.57
CCDC88C-203ENST00000389856 BCANQ96GW7 911 aa24.88■■□□□ 1.57
CCDC88C-203ENST00000389856 PRKRIP1Q9H875 184 aaPredicted RBP24.88■■□□□ 1.57
CCDC88C-203ENST00000389856 PUS7Q96PZ0 661 aaKnown RBP24.87■■□□□ 1.57
CCDC88C-203ENST00000389856 TXNDC2Q86VQ3 553 aa24.86■■□□□ 1.57
CCDC88C-203ENST00000389856 EVC2Q86UK5 1308 aa24.85■■□□□ 1.57
CCDC88C-203ENST00000389856 PTPRMP28827 1452 aa24.84■■□□□ 1.57
CCDC88C-203ENST00000389856 POGKQ9P215 609 aa24.84■■□□□ 1.57
CCDC88C-203ENST00000389856 STK26Q9P289 416 aa24.84■■□□□ 1.57
CCDC88C-203ENST00000389856 KNDC1Q76NI1 1749 aa24.84■■□□□ 1.57
CCDC88C-203ENST00000389856 ABCC11Q96J66 1382 aa24.83■■□□□ 1.57
CCDC88C-203ENST00000389856 DIP2AQ14689 1571 aa24.82■■□□□ 1.56
CCDC88C-203ENST00000389856 MYOM1P52179 1685 aa24.81■■□□□ 1.56
CCDC88C-203ENST00000389856 RALBP1Q15311 655 aa24.8■■□□□ 1.56
CCDC88C-203ENST00000389856 SIRT1Q96EB6 747 aa24.79■■□□□ 1.56
CCDC88C-203ENST00000389856 PANK3Q9H999 370 aa24.79■■□□□ 1.56
CCDC88C-203ENST00000389856 PRAM1Q96QH2 718 aa24.78■■□□□ 1.56
CCDC88C-203ENST00000389856 SENP3Q9H4L4 574 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-203ENST00000389856 TECPR2O15040 1411 aa24.77■■□□□ 1.56
CCDC88C-203ENST00000389856 LTKP29376 864 aa24.77■■□□□ 1.56
CCDC88C-203ENST00000389856 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
CCDC88C-203ENST00000389856 ADAMTS13Q76LX8 1427 aa24.77■■□□□ 1.56
CCDC88C-203ENST00000389856 FAM135BQ49AJ0 1406 aa24.76■■□□□ 1.55
CCDC88C-203ENST00000389856 NINLQ9Y2I6 1382 aa24.76■■□□□ 1.55
CCDC88C-203ENST00000389856 CPS1P31327 1500 aa24.76■■□□□ 1.55
CCDC88C-203ENST00000389856 KNSTRNQ9Y448 316 aa24.75■■□□□ 1.55
CCDC88C-203ENST00000389856 METP08581 1390 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms