RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 KIF21BO75037 1637 aa11.66□□□□□ -0.54
SNX1-202ENST00000380285 CCDC47Q96A33 483 aaKnown RBP11.66□□□□□ -0.54
SNX1-202ENST00000380285 MCM2P49736 904 aa11.66□□□□□ -0.54
SNX1-202ENST00000380285 MYOM3Q5VTT5 1437 aa11.66□□□□□ -0.54
SNX1-202ENST00000380285 CCP110O43303 1012 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 AKAP17AQ02040 695 aaKnown RBP11.65□□□□□ -0.54
SNX1-202ENST00000380285 NASPP49321 788 aaPredicted RBP11.65□□□□□ -0.54
SNX1-202ENST00000380285 AK7Q96M32 723 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 FAM13BQ9NYF5 915 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 GGT6Q6P531 493 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 SYNE3Q6ZMZ3 975 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 C22orf23Q9BZE7 217 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 HSP90AB4PQ58FF6 505 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 SASS6Q6UVJ0 657 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 RILPL2Q969X0 211 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 WASHC2AQ641Q2 1341 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 WASHC2CQ9Y4E1 1318 aa11.65□□□□□ -0.54
SNX1-202ENST00000380285 TMX4Q9H1E5 349 aaPredicted RBP11.65□□□□□ -0.55
SNX1-202ENST00000380285 SOX12O15370 315 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 TRIM29Q14134 588 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 NOL8Q76FK4 1167 aaKnown RBP11.64□□□□□ -0.55
SNX1-202ENST00000380285 KIF7Q2M1P5 1343 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 CCDC173Q0VFZ6 552 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 RUNDC1Q96C34 613 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 CHMP3Q9Y3E7 222 aa11.64□□□□□ -0.55
SNX1-202ENST00000380285 ERCC4Q92889 916 aaPredicted RBP11.63□□□□□ -0.55
SNX1-202ENST00000380285 HOMER1Q86YM7 354 aa11.63□□□□□ -0.55
SNX1-202ENST00000380285 COG6Q9Y2V7 657 aa11.63□□□□□ -0.55
SNX1-202ENST00000380285 CALRP27797 417 aaKnown RBP11.63□□□□□ -0.55
SNX1-202ENST00000380285 HSP90B2PQ58FF3 399 aa11.63□□□□□ -0.55
SNX1-202ENST00000380285 CCAR2Q8N163 923 aaKnown RBP11.62□□□□□ -0.55
SNX1-202ENST00000380285 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.62□□□□□ -0.55
SNX1-202ENST00000380285 AMPHP49418 695 aa11.62□□□□□ -0.55
SNX1-202ENST00000380285 WWC1Q8IX03 1113 aa11.62□□□□□ -0.55
SNX1-202ENST00000380285 SCAPERQ9BY12 1400 aa11.62□□□□□ -0.55
SNX1-202ENST00000380285 VGFO15240 615 aaPredicted RBP11.62□□□□□ -0.55
SNX1-202ENST00000380285 SMC3Q9UQE7 1217 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 ERC2O15083 957 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 PLIN1O60240 522 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 MNS1Q8NEH6 495 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 ZNF592Q92610 1267 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 SLC4A3P48751 1232 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 NEXNQ0ZGT2 675 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 RUFY1Q96T51 708 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 KIF3BO15066 747 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 CCDC73Q6ZRK6 1079 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 FGD6Q6ZV73 1430 aa11.61□□□□□ -0.55
SNX1-202ENST00000380285 CDC45O75419 566 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 PAK3O75914 559 aaPredicted RBP11.6□□□□□ -0.55
SNX1-202ENST00000380285 ERICH3Q5RHP9 1530 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 BICD2Q8TD16 824 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 COG3Q96JB2 828 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 EID1Q9Y6B2 187 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 CSB-PGBD3P0DP91 1061 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 FOXD4L5Q5VV16 416 aaPredicted RBP11.6□□□□□ -0.55
SNX1-202ENST00000380285 FOXD4L4Q8WXT5 416 aaPredicted RBP11.6□□□□□ -0.55
SNX1-202ENST00000380285 CREBRFQ8IUR6 639 aa11.6□□□□□ -0.55
SNX1-202ENST00000380285 PES1O00541 588 aaKnown RBP11.6□□□□□ -0.55
SNX1-202ENST00000380285 FYCO1Q9BQS8 1478 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 CAVIN1Q6NZI2 390 aaKnown RBP11.59□□□□□ -0.55
SNX1-202ENST00000380285 GNAI1P63096 354 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 CADPSQ9ULU8 1353 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 PDCP20941 246 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 IFT57Q9NWB7 429 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 PDIA4P13667 645 aaKnown RBP11.59□□□□□ -0.55
SNX1-202ENST00000380285 MARCH6O60337 910 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 MCTP1Q6DN14 999 aa11.59□□□□□ -0.55
SNX1-202ENST00000380285 TRAK2O60296 914 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 CWC22Q9HCG8 908 aaKnown RBP11.58□□□□□ -0.56
SNX1-202ENST00000380285 APAF1O14727 1248 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 CPLX1O14810 134 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 PSMA5P28066 241 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 ANO2Q9NQ90 1003 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 DCTN1Q14203 1278 aa11.58□□□□□ -0.56
SNX1-202ENST00000380285 DDX58O95786 925 aaKnown RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 PDE3AQ14432 1141 aa11.57□□□□□ -0.56
SNX1-202ENST00000380285 RABEP1Q15276 862 aa11.57□□□□□ -0.56
SNX1-202ENST00000380285 DIAPH1O60610 1272 aaKnown RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 CT47B1P0C2W7 299 aaPredicted RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 HNRNPMP52272 730 aaKnown RBP eCLIP11.57□□□□□ -0.56
SNX1-202ENST00000380285 LRRC9Q6ZRR7 1453 aa11.57□□□□□ -0.56
SNX1-202ENST00000380285 IFIT2P09913 472 aaKnown RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 TRDNQ13061 729 aa11.57□□□□□ -0.56
SNX1-202ENST00000380285 NGDNQ8NEJ9 315 aaKnown RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 TAF3Q5VWG9 929 aa11.57□□□□□ -0.56
SNX1-202ENST00000380285 RRP7AQ9Y3A4 280 aaKnown RBP11.57□□□□□ -0.56
SNX1-202ENST00000380285 AMOTL1Q8IY63 956 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 PRM3Q9NNZ6 103 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 MYO6Q9UM54 1294 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 RRP9O43818 475 aaKnown RBP11.56□□□□□ -0.56
SNX1-202ENST00000380285 TOMM22Q9NS69 142 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 SAFBQ15424 915 aaKnown RBP eCLIP11.56□□□□□ -0.56
SNX1-202ENST00000380285 C1orf141Q5JVX7 400 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 OLFM4Q6UX06 510 aa11.56□□□□□ -0.56
SNX1-202ENST00000380285 C9orf78Q9NZ63 289 aaPredicted RBP11.55□□□□□ -0.56
SNX1-202ENST00000380285 CIZ1Q9ULV3 898 aaPredicted RBP11.55□□□□□ -0.56
SNX1-202ENST00000380285 TDRD9Q8NDG6 1382 aaKnown RBP11.55□□□□□ -0.56
SNX1-202ENST00000380285 HIP1O00291 1037 aa11.55□□□□□ -0.56
SNX1-202ENST00000380285 TSPY26PQ9H489 355 aa11.55□□□□□ -0.56
SNX1-202ENST00000380285 SMG6Q86US8 1419 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms