RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 SCAF11Q99590 1463 aaKnown RBP33.51■■■□□ 2.96
C9orf40-201ENST00000376854 CDCA8Q53HL2 280 aa33.51■■■□□ 2.96
C9orf40-201ENST00000376854 ADAMTS8Q9UP79 889 aa33.51■■■□□ 2.95
C9orf40-201ENST00000376854 PAK3O75914 559 aaPredicted RBP33.5■■■□□ 2.95
C9orf40-201ENST00000376854 IPO9Q96P70 1041 aaKnown RBP33.5■■■□□ 2.95
C9orf40-201ENST00000376854 MROH1Q8NDA8 1641 aa33.49■■■□□ 2.95
C9orf40-201ENST00000376854 PPP2R1AP30153 589 aa33.48■■■□□ 2.95
C9orf40-201ENST00000376854 TCERG1O14776 1098 aaKnown RBP33.47■■■□□ 2.95
C9orf40-201ENST00000376854 PLIN1O60240 522 aa33.46■■■□□ 2.95
C9orf40-201ENST00000376854 AMER1Q5JTC6 1135 aaPredicted RBP33.46■■■□□ 2.95
C9orf40-201ENST00000376854 SYNMO15061 1565 aa33.45■■■□□ 2.94
C9orf40-201ENST00000376854 UGGT1Q9NYU2 1555 aa33.45■■■□□ 2.94
C9orf40-201ENST00000376854 WDR43Q15061 677 aaKnown RBP eCLIP33.42■■■□□ 2.94
C9orf40-201ENST00000376854 KIDINS220Q9ULH0 1771 aa33.42■■■□□ 2.94
C9orf40-201ENST00000376854 EIF3AQ14152 1382 aaKnown RBP33.4■■■□□ 2.94
C9orf40-201ENST00000376854 ASXL1Q8IXJ9 1541 aa33.38■■■□□ 2.93
C9orf40-201ENST00000376854 CRBNQ96SW2 442 aa33.37■■■□□ 2.93
C9orf40-201ENST00000376854 BCL11AQ9H165 835 aa33.37■■■□□ 2.93
C9orf40-201ENST00000376854 ZBTB47Q9UFB7 747 aaPredicted RBP33.36■■■□□ 2.93
C9orf40-201ENST00000376854 OSCARQ8IYS5 282 aa33.35■■■□□ 2.93
C9orf40-201ENST00000376854 NPM1P06748 294 aaKnown RBP eCLIP33.35■■■□□ 2.93
C9orf40-201ENST00000376854 PLEKHH1Q9ULM0 1364 aa33.34■■■□□ 2.93
C9orf40-201ENST00000376854 MS4A1P11836 297 aa33.34■■■□□ 2.93
C9orf40-201ENST00000376854 EFCAB6Q5THR3 1501 aa33.33■■■□□ 2.93
C9orf40-201ENST00000376854 ZNF518AQ6AHZ1 1483 aa33.33■■■□□ 2.93
C9orf40-201ENST00000376854 PDE4AP27815 886 aa33.33■■■□□ 2.93
C9orf40-201ENST00000376854 PIK3C2GO75747 1445 aa33.32■■■□□ 2.92
C9orf40-201ENST00000376854 NPC1L1Q9UHC9 1359 aa33.31■■■□□ 2.92
C9orf40-201ENST00000376854 PPRC1Q5VV67 1664 aaKnown RBP33.31■■■□□ 2.92
C9orf40-201ENST00000376854 CFAP70Q5T0N1 1121 aa33.3■■■□□ 2.92
C9orf40-201ENST00000376854 ADGRF5Q8IZF2 1346 aa33.3■■■□□ 2.92
C9orf40-201ENST00000376854 MYOM1P52179 1685 aa33.3■■■□□ 2.92
C9orf40-201ENST00000376854 KIAA1210Q9ULL0 1709 aa33.3■■■□□ 2.92
C9orf40-201ENST00000376854 NEURL4Q96JN8 1562 aa33.29■■■□□ 2.92
C9orf40-201ENST00000376854 NBR1Q14596 966 aa33.29■■■□□ 2.92
C9orf40-201ENST00000376854 DUSP27Q5VZP5 1158 aa33.29■■■□□ 2.92
C9orf40-201ENST00000376854 CD109Q6YHK3 1445 aa33.28■■■□□ 2.92
C9orf40-201ENST00000376854 ZNF521Q96K83 1311 aa33.28■■■□□ 2.92
C9orf40-201ENST00000376854 BACH2Q9BYV9 841 aa33.28■■■□□ 2.92
C9orf40-201ENST00000376854 C20orf194Q5TEA3 1177 aa33.26■■■□□ 2.91
C9orf40-201ENST00000376854 GOLGA2Q08379 1002 aa33.25■■■□□ 2.91
C9orf40-201ENST00000376854 NPM2Q86SE8 214 aaKnown RBP33.25■■■□□ 2.91
C9orf40-201ENST00000376854 MAP3K4Q9Y6R4 1608 aa33.25■■■□□ 2.91
C9orf40-201ENST00000376854 KDM5AP29375 1690 aaKnown RBP33.25■■■□□ 2.91
C9orf40-201ENST00000376854 ABCA6Q8N139 1617 aa33.25■■■□□ 2.91
C9orf40-201ENST00000376854 MROH2AA6NES4 1674 aa33.24■■■□□ 2.91
C9orf40-201ENST00000376854 MYOM2P54296 1465 aa33.24■■■□□ 2.91
C9orf40-201ENST00000376854 POGZQ7Z3K3 1410 aa33.23■■■□□ 2.91
C9orf40-201ENST00000376854 SLC24A1O60721 1099 aa33.23■■■□□ 2.91
C9orf40-201ENST00000376854 KIF1BO60333 1816 aa33.22■■■□□ 2.91
C9orf40-201ENST00000376854 LMTK2Q8IWU2 1503 aa33.21■■■□□ 2.91
C9orf40-201ENST00000376854 FRMPD1Q5SYB0 1578 aa33.21■■■□□ 2.91
C9orf40-201ENST00000376854 ERVK-7P63135 1459 aa33.19■■■□□ 2.9
C9orf40-201ENST00000376854 GGT6Q6P531 493 aa33.18■■■□□ 2.9
C9orf40-201ENST00000376854 IFT172Q9UG01 1749 aa33.18■■■□□ 2.9
C9orf40-201ENST00000376854 DEKP35659 375 aaKnown RBP33.17■■■□□ 2.9
C9orf40-201ENST00000376854 CCDC146Q8IYE0 955 aa33.17■■■□□ 2.9
C9orf40-201ENST00000376854 SLFN5Q08AF3 891 aa33.16■■■□□ 2.9
C9orf40-201ENST00000376854 CHGAP10645 457 aaKnown RBP33.16■■■□□ 2.9
C9orf40-201ENST00000376854 MLH3Q9UHC1 1453 aa33.14■■■□□ 2.9
C9orf40-201ENST00000376854 CFAP74Q9C0B2 1584 aa33.14■■■□□ 2.9
C9orf40-201ENST00000376854 SKAP1Q86WV1 359 aa33.14■■■□□ 2.9
C9orf40-201ENST00000376854 NPATQ14207 1427 aa33.13■■■□□ 2.89
C9orf40-201ENST00000376854 GOLGA6L2Q8N9W4 650 aaPredicted RBP33.13■■■□□ 2.89
C9orf40-201ENST00000376854 NOS1P29475 1434 aa33.12■■■□□ 2.89
C9orf40-201ENST00000376854 CFAP65Q6ZU64 1925 aaKnown RBP33.12■■■□□ 2.89
C9orf40-201ENST00000376854 KDM2BQ8NHM5 1336 aa33.12■■■□□ 2.89
C9orf40-201ENST00000376854 HECW2Q9P2P5 1572 aa33.12■■■□□ 2.89
C9orf40-201ENST00000376854 CARD14Q9BXL6 1004 aa33.12■■■□□ 2.89
C9orf40-201ENST00000376854 ADGRB3O60242 1522 aa33.11■■■□□ 2.89
C9orf40-201ENST00000376854 NRXN1Q9ULB1 1477 aa33.1■■■□□ 2.89
C9orf40-201ENST00000376854 APAF1O14727 1248 aa33.1■■■□□ 2.89
C9orf40-201ENST00000376854 TRMT2AQ8IZ69 625 aaKnown RBP33.1■■■□□ 2.89
C9orf40-201ENST00000376854 RAPGEF3O95398 923 aa33.08■■■□□ 2.89
C9orf40-201ENST00000376854 CENPQQ7L2Z9 268 aaPredicted RBP33.08■■■□□ 2.89
C9orf40-201ENST00000376854 SBNO2Q9Y2G9 1366 aa33.04■■■□□ 2.88
C9orf40-201ENST00000376854 RTL5Q5HYW3 569 aaPredicted RBP33.04■■■□□ 2.88
C9orf40-201ENST00000376854 SPINK5Q9NQ38 1064 aaPredicted RBP33.04■■■□□ 2.88
C9orf40-201ENST00000376854 NKTRP30414 1462 aaKnown RBP33.02■■■□□ 2.88
C9orf40-201ENST00000376854 MYO3AQ8NEV4 1616 aa33.02■■■□□ 2.88
C9orf40-201ENST00000376854 ABCC3O15438 1527 aa33.02■■■□□ 2.88
C9orf40-201ENST00000376854 CENPJQ9HC77 1338 aaPredicted RBP33.01■■■□□ 2.87
C9orf40-201ENST00000376854 E9PSI1 815 aa33■■■□□ 2.87
C9orf40-201ENST00000376854 NGEFQ8N5V2 710 aa32.97■■■□□ 2.87
C9orf40-201ENST00000376854 TRAK1Q9UPV9 953 aa32.97■■■□□ 2.87
C9orf40-201ENST00000376854 PPLO60437 1756 aa32.96■■■□□ 2.87
C9orf40-201ENST00000376854 SETBP1Q9Y6X0 1596 aa32.96■■■□□ 2.87
C9orf40-201ENST00000376854 NEO1Q92859 1461 aa32.95■■■□□ 2.87
C9orf40-201ENST00000376854 POLR3AO14802 1390 aaPredicted RBP32.95■■■□□ 2.86
C9orf40-201ENST00000376854 TMEM132EQ6IEE7 984 aa32.94■■■□□ 2.86
C9orf40-201ENST00000376854 C14orf93Q9H972 538 aaKnown RBP32.93■■■□□ 2.86
C9orf40-201ENST00000376854 BCAR3O75815 825 aa32.93■■■□□ 2.86
C9orf40-201ENST00000376854 SIGLEC1Q9BZZ2 1709 aa32.92■■■□□ 2.86
C9orf40-201ENST00000376854 DMRT2Q9Y5R5 561 aa32.92■■■□□ 2.86
C9orf40-201ENST00000376854 CAMSAP1Q5T5Y3 1602 aa32.92■■■□□ 2.86
C9orf40-201ENST00000376854 NUTM2DQ5VT03 806 aaPredicted RBP32.91■■■□□ 2.86
C9orf40-201ENST00000376854 DDRGK1Q96HY6 314 aa32.91■■■□□ 2.86
C9orf40-201ENST00000376854 DIP2CQ9Y2E4 1556 aa32.9■■■□□ 2.86
C9orf40-201ENST00000376854 NSD3Q9BZ95 1437 aa32.9■■■□□ 2.86
C9orf40-201ENST00000376854 ADGRB1O14514 1584 aa32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms