RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 METTL3Q86U44 580 aaKnown RBP9.85□□□□□ -0.83
USP48-202ENST00000374730 KCNC4Q03721 635 aa9.82□□□□□ -0.84
USP48-202ENST00000374730 PRR14Q9BWN1 585 aa9.82□□□□□ -0.84
USP48-202ENST00000374730 A0A0G2JS52 829 aa9.81□□□□□ -0.84
USP48-202ENST00000374730 APLP1P51693 650 aa9.81□□□□□ -0.84
USP48-202ENST00000374730 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.81□□□□□ -0.84
USP48-202ENST00000374730 MAP2K5Q13163 448 aa9.79□□□□□ -0.84
USP48-202ENST00000374730 TJAP1Q5JTD0 557 aa9.79□□□□□ -0.84
USP48-202ENST00000374730 MTRQ99707 1265 aa9.78□□□□□ -0.84
USP48-202ENST00000374730 IL21Q9HBE4 155 aa9.78□□□□□ -0.84
USP48-202ENST00000374730 RGS20O76081 388 aa9.77□□□□□ -0.85
USP48-202ENST00000374730 LMOD2Q6P5Q4 547 aa9.77□□□□□ -0.85
USP48-202ENST00000374730 KMT5BQ4FZB7 885 aa9.75□□□□□ -0.85
USP48-202ENST00000374730 DAXXQ9UER7 740 aaPredicted RBP9.75□□□□□ -0.85
USP48-202ENST00000374730 MINK1Q8N4C8 1332 aaPredicted RBP9.75□□□□□ -0.85
USP48-202ENST00000374730 SLC10A3P09131 477 aa9.74□□□□□ -0.85
USP48-202ENST00000374730 RSPH4AQ5TD94 716 aa9.74□□□□□ -0.85
USP48-202ENST00000374730 CFHP08603 1231 aa9.73□□□□□ -0.85
USP48-202ENST00000374730 PHOX2BQ99453 314 aa9.73□□□□□ -0.85
USP48-202ENST00000374730 IRF6O14896 467 aa9.72□□□□□ -0.85
USP48-202ENST00000374730 ACTN4O43707 911 aaKnown RBP9.72□□□□□ -0.85
USP48-202ENST00000374730 PCDHB3Q9Y5E6 796 aa9.72□□□□□ -0.85
USP48-202ENST00000374730 SULF1Q8IWU6 871 aa9.7□□□□□ -0.86
USP48-202ENST00000374730 COPS2P61201 443 aa9.69□□□□□ -0.86
USP48-202ENST00000374730 ZNF516Q92618 1163 aa9.69□□□□□ -0.86
USP48-202ENST00000374730 CCDC102AQ96A19 550 aa9.69□□□□□ -0.86
USP48-202ENST00000374730 NLRP7Q8WX94 980 aa9.68□□□□□ -0.86
USP48-202ENST00000374730 SLC24A1O60721 1099 aa9.67□□□□□ -0.86
USP48-202ENST00000374730 ZPR1O75312 459 aa9.67□□□□□ -0.86
USP48-202ENST00000374730 BLOC1S3Q6QNY0 202 aa9.67□□□□□ -0.86
USP48-202ENST00000374730 DDX11L8A8MPP1 907 aa9.66□□□□□ -0.86
USP48-202ENST00000374730 RDH13Q8NBN7 331 aa9.66□□□□□ -0.86
USP48-202ENST00000374730 ZMYND10O75800 440 aa9.65□□□□□ -0.86
USP48-202ENST00000374730 BARGINQ6ZT62 677 aa9.65□□□□□ -0.86
USP48-202ENST00000374730 ZC3H15Q8WU90 426 aaKnown RBP9.65□□□□□ -0.86
USP48-202ENST00000374730 NR1I2O75469 434 aa9.63□□□□□ -0.87
USP48-202ENST00000374730 GCGRP47871 477 aa9.62□□□□□ -0.87
USP48-202ENST00000374730 NKX2-3Q8TAU0 364 aa9.62□□□□□ -0.87
USP48-202ENST00000374730 CD46P15529 392 aa9.61□□□□□ -0.87
USP48-202ENST00000374730 GGCXP38435 758 aa9.61□□□□□ -0.87
USP48-202ENST00000374730 MDM2Q00987 491 aaPredicted RBP9.61□□□□□ -0.87
USP48-202ENST00000374730 PPP1R18Q6NYC8 613 aa9.61□□□□□ -0.87
USP48-202ENST00000374730 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.61□□□□□ -0.87
USP48-202ENST00000374730 CLCN1P35523 988 aa9.6□□□□□ -0.87
USP48-202ENST00000374730 KRI1Q8N9T8 703 aaKnown RBP9.6□□□□□ -0.87
USP48-202ENST00000374730 TMUB1Q9BVT8 246 aa9.6□□□□□ -0.87
USP48-202ENST00000374730 GPCPD1Q9NPB8 672 aa9.6□□□□□ -0.87
USP48-202ENST00000374730 TLL1O43897 1013 aa9.58□□□□□ -0.88
USP48-202ENST00000374730 ATP6V1AP38606 617 aa9.58□□□□□ -0.88
USP48-202ENST00000374730 FUT2Q10981 343 aa9.58□□□□□ -0.88
USP48-202ENST00000374730 ADH1BP00325 375 aa9.57□□□□□ -0.88
USP48-202ENST00000374730 PUS10Q3MIT2 529 aaKnown RBP9.57□□□□□ -0.88
USP48-202ENST00000374730 MORN1Q5T089 497 aa9.57□□□□□ -0.88
USP48-202ENST00000374730 SCUBE3Q8IX30 993 aa9.57□□□□□ -0.88
USP48-202ENST00000374730 AMHR2Q16671 573 aa9.56□□□□□ -0.88
USP48-202ENST00000374730 FAM217BQ9NTX9 383 aaPredicted RBP9.56□□□□□ -0.88
USP48-202ENST00000374730 GRIPAP1Q4V328 841 aa9.55□□□□□ -0.88
USP48-202ENST00000374730 BCANQ96GW7 911 aa9.54□□□□□ -0.88
USP48-202ENST00000374730 V9GY48 417 aaPredicted RBP9.54□□□□□ -0.88
USP48-202ENST00000374730 USP46P62068 366 aa9.53□□□□□ -0.88
USP48-202ENST00000374730 SALL2Q9Y467 1007 aaPredicted RBP9.53□□□□□ -0.88
USP48-202ENST00000374730 KDM4AO75164 1064 aa9.52□□□□□ -0.89
USP48-202ENST00000374730 THAP11Q96EK4 314 aa9.52□□□□□ -0.89
USP48-202ENST00000374730 SPSB2Q99619 263 aa9.52□□□□□ -0.89
USP48-202ENST00000374730 PRKD2Q9BZL6 878 aa9.52□□□□□ -0.89
USP48-202ENST00000374730 RNF223E7ERA6 249 aa9.51□□□□□ -0.89
USP48-202ENST00000374730 S1PR4O95977 384 aa9.51□□□□□ -0.89
USP48-202ENST00000374730 ANKLE1Q8NAG6 615 aa9.51□□□□□ -0.89
USP48-202ENST00000374730 REPIN1Q9BWE0 567 aaKnown RBP9.51□□□□□ -0.89
USP48-202ENST00000374730 IRX2Q9BZI1 471 aaPredicted RBP9.51□□□□□ -0.89
USP48-202ENST00000374730 SLC6A16Q9GZN6 736 aa9.51□□□□□ -0.89
USP48-202ENST00000374730 SLC27A5Q9Y2P5 690 aa9.51□□□□□ -0.89
USP48-202ENST00000374730 FMNL1O95466 1100 aaPredicted RBP9.5□□□□□ -0.89
USP48-202ENST00000374730 TTLL12Q14166 644 aaPredicted RBP9.5□□□□□ -0.89
USP48-202ENST00000374730 AK7Q96M32 723 aa9.5□□□□□ -0.89
USP48-202ENST00000374730 TRIM66O15016 1216 aa9.48□□□□□ -0.89
USP48-202ENST00000374730 Q3C1V9 767 aa9.48□□□□□ -0.89
USP48-202ENST00000374730 HOXA2O43364 376 aa9.47□□□□□ -0.89
USP48-202ENST00000374730 SSTR3P32745 418 aaPredicted RBP9.47□□□□□ -0.89
USP48-202ENST00000374730 BRICD5Q6PL45 260 aa9.47□□□□□ -0.89
USP48-202ENST00000374730 GIGYF2Q6Y7W6 1299 aaKnown RBP9.47□□□□□ -0.89
USP48-202ENST00000374730 MSS51Q4VC12 460 aa9.46□□□□□ -0.9
USP48-202ENST00000374730 NUTM1Q86Y26 1132 aa9.45□□□□□ -0.9
USP48-202ENST00000374730 PARP9Q8IXQ6 854 aa9.45□□□□□ -0.9
USP48-202ENST00000374730 RNF19BQ6ZMZ0 732 aa9.44□□□□□ -0.9
USP48-202ENST00000374730 PPEF1O14829 653 aaPredicted RBP9.43□□□□□ -0.9
USP48-202ENST00000374730 SLC19A1P41440 591 aa9.43□□□□□ -0.9
USP48-202ENST00000374730 LAPTM4AQ15012 233 aa9.43□□□□□ -0.9
USP48-202ENST00000374730 FAM160A2Q8N612 972 aaPredicted RBP9.43□□□□□ -0.9
USP48-202ENST00000374730 EMID1Q96A84 441 aaPredicted RBP9.42□□□□□ -0.9
USP48-202ENST00000374730 HLA-CQ95604 372 aa9.41□□□□□ -0.9
USP48-202ENST00000374730 SLC24A3Q9HC58 644 aa9.41□□□□□ -0.9
USP48-202ENST00000374730 USB1Q9BQ65 265 aaKnown RBP9.4□□□□□ -0.9
USP48-202ENST00000374730 PDE4DQ08499 809 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 PLA2G2CQ5R387 149 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 SPRYD7Q5W111 196 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 SPIRE2Q8WWL2 714 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 BEGAINQ9BUH8 593 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 PRDM9Q9NQV7 894 aa9.39□□□□□ -0.91
USP48-202ENST00000374730 MMP16P51512 607 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms