RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 INSRP06213 1382 aa11.93□□□□□ -0.5
SNRNP40-202ENST00000373720 EIF3AQ14152 1382 aaKnown RBP11.93□□□□□ -0.5
SNRNP40-202ENST00000373720 RPGRIP1LQ68CZ1 1315 aa11.93□□□□□ -0.5
SNRNP40-202ENST00000373720 CEP152O94986 1710 aa11.93□□□□□ -0.5
SNRNP40-202ENST00000373720 SPHKAPQ2M3C7 1700 aa11.93□□□□□ -0.5
SNRNP40-202ENST00000373720 HECW2Q9P2P5 1572 aa11.92□□□□□ -0.5
SNRNP40-202ENST00000373720 MYOM2P54296 1465 aa11.92□□□□□ -0.5
SNRNP40-202ENST00000373720 EVX2Q03828 476 aa11.92□□□□□ -0.5
SNRNP40-202ENST00000373720 HIRIP3Q9BW71 556 aaPredicted RBP11.92□□□□□ -0.5
SNRNP40-202ENST00000373720 KIDINS220Q9ULH0 1771 aa11.92□□□□□ -0.5
SNRNP40-202ENST00000373720 EFCAB6Q5THR3 1501 aa11.91□□□□□ -0.5
SNRNP40-202ENST00000373720 E9PCH4 1651 aa11.91□□□□□ -0.5
SNRNP40-202ENST00000373720 SPDYE1Q8NFV5 336 aaPredicted RBP11.91□□□□□ -0.5
SNRNP40-202ENST00000373720 ARHGAP31Q2M1Z3 1444 aa11.91□□□□□ -0.5
SNRNP40-202ENST00000373720 KIF3BO15066 747 aa11.9□□□□□ -0.5
SNRNP40-202ENST00000373720 PRKAR2AP13861 404 aaKnown RBP11.9□□□□□ -0.5
SNRNP40-202ENST00000373720 TMF1P82094 1093 aa11.9□□□□□ -0.5
SNRNP40-202ENST00000373720 ZMYM4Q5VZL5 1548 aa11.9□□□□□ -0.5
SNRNP40-202ENST00000373720 ZC3H13Q5T200 1668 aaKnown RBP11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 ST20-MTHFSA0A0A6YYL1 179 aa11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 C11orf95C9JLR9 678 aaPredicted RBP11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 NEFLP07196 543 aa11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 ZNF326Q5BKZ1 582 aaKnown RBP11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 ZNF692Q9BU19 519 aaPredicted RBP11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 MYT1LQ9UL68 1186 aa11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 MAP3K4Q9Y6R4 1608 aa11.88□□□□□ -0.51
SNRNP40-202ENST00000373720 MROH1Q8NDA8 1641 aa11.87□□□□□ -0.51
SNRNP40-202ENST00000373720 KDM2AQ9Y2K7 1162 aa11.87□□□□□ -0.51
SNRNP40-202ENST00000373720 BRD4O60885 1362 aaPredicted RBP11.87□□□□□ -0.51
SNRNP40-202ENST00000373720 SCAF11Q99590 1463 aaKnown RBP11.87□□□□□ -0.51
SNRNP40-202ENST00000373720 PUS7Q96PZ0 661 aaKnown RBP11.86□□□□□ -0.51
SNRNP40-202ENST00000373720 SBNO2Q9Y2G9 1366 aa11.86□□□□□ -0.51
SNRNP40-202ENST00000373720 REREQ9P2R6 1566 aa11.86□□□□□ -0.51
SNRNP40-202ENST00000373720 ZBED9Q6R2W3 1325 aa11.86□□□□□ -0.51
SNRNP40-202ENST00000373720 COL17A1Q9UMD9 1497 aaPredicted RBP11.85□□□□□ -0.51
SNRNP40-202ENST00000373720 NRXN1Q9ULB1 1477 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 KIF1BO60333 1816 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 RGL3Q3MIN7 710 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 MRS2Q9HD23 443 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 SLC52A1Q9NWF4 448 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 MADDQ8WXG6 1647 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 MYBBP1AQ9BQG0 1328 aaKnown RBP11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 SETBP1Q9Y6X0 1596 aa11.84□□□□□ -0.51
SNRNP40-202ENST00000373720 NPC1L1Q9UHC9 1359 aa11.83□□□□□ -0.52
SNRNP40-202ENST00000373720 CLTCL1P53675 1640 aa11.82□□□□□ -0.52
SNRNP40-202ENST00000373720 MKRN4PQ13434 485 aaPredicted RBP11.82□□□□□ -0.52
SNRNP40-202ENST00000373720 TESK2Q96S53 571 aa11.82□□□□□ -0.52
SNRNP40-202ENST00000373720 ZFYVE9O95405 1425 aa11.82□□□□□ -0.52
SNRNP40-202ENST00000373720 NOS1P29475 1434 aa11.81□□□□□ -0.52
SNRNP40-202ENST00000373720 NLRP13Q86W25 1043 aa11.81□□□□□ -0.52
SNRNP40-202ENST00000373720 IQGAP1P46940 1657 aa11.81□□□□□ -0.52
SNRNP40-202ENST00000373720 AGLP35573 1532 aa11.81□□□□□ -0.52
SNRNP40-202ENST00000373720 ABCC3O15438 1527 aa11.8□□□□□ -0.52
SNRNP40-202ENST00000373720 ADGRB3O60242 1522 aa11.8□□□□□ -0.52
SNRNP40-202ENST00000373720 RICTORQ6R327 1708 aa11.8□□□□□ -0.52
SNRNP40-202ENST00000373720 FRMPD1Q5SYB0 1578 aa11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 PPRC1Q5VV67 1664 aaKnown RBP11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 VGFO15240 615 aaPredicted RBP11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 HNRNPUQ00839 825 aaKnown RBP eCLIP11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 TMC1Q8TDI8 760 aa11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 DIP2CQ9Y2E4 1556 aa11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 PARD3Q8TEW0 1356 aa11.79□□□□□ -0.52
SNRNP40-202ENST00000373720 PER1O15534 1290 aaPredicted RBP11.78□□□□□ -0.52
SNRNP40-202ENST00000373720 PDE3BQ13370 1112 aa11.78□□□□□ -0.52
SNRNP40-202ENST00000373720 NPATQ14207 1427 aa11.77□□□□□ -0.52
SNRNP40-202ENST00000373720 NBPF1Q3BBV0 1214 aa11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 NGEFQ8N5V2 710 aa11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 SSUH2Q9Y2M2 353 aa11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 SUPT16HQ9Y5B9 1047 aaKnown RBP11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 ABCA6Q8N139 1617 aa11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 IFT172Q9UG01 1749 aa11.77□□□□□ -0.53
SNRNP40-202ENST00000373720 SYNMO15061 1565 aa11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 RIMBP3CA6NJZ7 1639 aa11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 RIMBP3BA6NNM3 1639 aa11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 RIMBP3Q9UFD9 1639 aa11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 PNISRQ8TF01 805 aaKnown RBP11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 LRPPRCP42704 1394 aaKnown RBP11.76□□□□□ -0.53
SNRNP40-202ENST00000373720 DIP2BQ9P265 1576 aa11.75□□□□□ -0.53
SNRNP40-202ENST00000373720 MYO3AQ8NEV4 1616 aa11.75□□□□□ -0.53
SNRNP40-202ENST00000373720 C14orf93Q9H972 538 aaKnown RBP11.75□□□□□ -0.53
SNRNP40-202ENST00000373720 PIK3C2BO00750 1634 aa11.75□□□□□ -0.53
SNRNP40-202ENST00000373720 CAMSAP1Q5T5Y3 1602 aa11.75□□□□□ -0.53
SNRNP40-202ENST00000373720 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
SNRNP40-202ENST00000373720 PIK3C2GO75747 1445 aa11.73□□□□□ -0.53
SNRNP40-202ENST00000373720 CYB5RLQ6IPT4 315 aa11.73□□□□□ -0.53
SNRNP40-202ENST00000373720 KNSTRNQ9Y448 316 aa11.73□□□□□ -0.53
SNRNP40-202ENST00000373720 SMG6Q86US8 1419 aaKnown RBP11.72□□□□□ -0.53
SNRNP40-202ENST00000373720 NINLQ9Y2I6 1382 aa11.72□□□□□ -0.53
SNRNP40-202ENST00000373720 GGT6Q6P531 493 aa11.72□□□□□ -0.53
SNRNP40-202ENST00000373720 FAM69CQ0P6D2 419 aa11.71□□□□□ -0.53
SNRNP40-202ENST00000373720 PPLO60437 1756 aa11.7□□□□□ -0.54
SNRNP40-202ENST00000373720 PRR29P0C7W0 189 aa11.7□□□□□ -0.54
SNRNP40-202ENST00000373720 HDGFP51858 240 aaKnown RBP11.7□□□□□ -0.54
SNRNP40-202ENST00000373720 FAM9BQ8IZU0 186 aa11.7□□□□□ -0.54
SNRNP40-202ENST00000373720 DISP3Q9P2K9 1392 aa11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 KDM5AP29375 1690 aaKnown RBP11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 RAPGEF3O95398 923 aa11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 POLR3GLQ9BT43 218 aa11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 PANK3Q9H999 370 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms