RNA–Protein interactions for RNA: ENST00000368213.9

PTPRK-205, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,816 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-205ENST00000368213 RBM33Q96EV2 1170 aaKnown RBP13.47□□□□□ -0.25
PTPRK-205ENST00000368213 TOM1L2Q6ZVM7 507 aa13.47□□□□□ -0.25
PTPRK-205ENST00000368213 GGNBP2Q9H3C7 697 aa13.47□□□□□ -0.25
PTPRK-205ENST00000368213 C9orf78Q9NZ63 289 aaPredicted RBP13.46□□□□□ -0.25
PTPRK-205ENST00000368213 C9orf84Q5VXU9 1444 aa13.46□□□□□ -0.25
PTPRK-205ENST00000368213 CFAP70Q5T0N1 1121 aa13.46□□□□□ -0.25
PTPRK-205ENST00000368213 ANP32EQ9BTT0 268 aa13.46□□□□□ -0.25
PTPRK-205ENST00000368213 MYBBP1AQ9BQG0 1328 aaKnown RBP13.46□□□□□ -0.26
PTPRK-205ENST00000368213 EFCAB5A4FU69 1503 aa13.46□□□□□ -0.26
PTPRK-205ENST00000368213 BICRAQ9NZM4 1560 aa13.45□□□□□ -0.26
PTPRK-205ENST00000368213 MAGI1Q96QZ7 1491 aaPredicted RBP13.45□□□□□ -0.26
PTPRK-205ENST00000368213 KIF21BO75037 1637 aa13.45□□□□□ -0.26
PTPRK-205ENST00000368213 HSCBQ8IWL3 235 aa13.45□□□□□ -0.26
PTPRK-205ENST00000368213 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
PTPRK-205ENST00000368213 PRDM11Q9NQV5 511 aa13.45□□□□□ -0.26
PTPRK-205ENST00000368213 HECW1Q76N89 1606 aa13.44□□□□□ -0.26
PTPRK-205ENST00000368213 PDE3BQ13370 1112 aa13.44□□□□□ -0.26
PTPRK-205ENST00000368213 CTDP1Q9Y5B0 961 aaPredicted RBP13.44□□□□□ -0.26
PTPRK-205ENST00000368213 AMOTL1Q8IY63 956 aa13.44□□□□□ -0.26
PTPRK-205ENST00000368213 TOP2BQ02880 1626 aa13.44□□□□□ -0.26
PTPRK-205ENST00000368213 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
PTPRK-205ENST00000368213 ERICH3Q5RHP9 1530 aa13.43□□□□□ -0.26
PTPRK-205ENST00000368213 PTMAP06454 111 aaKnown RBP13.43□□□□□ -0.26
PTPRK-205ENST00000368213 HMOX1P09601 288 aa13.43□□□□□ -0.26
PTPRK-205ENST00000368213 HSP90B1P14625 803 aaKnown RBP13.43□□□□□ -0.26
PTPRK-205ENST00000368213 VPS53Q5VIR6 699 aa13.43□□□□□ -0.26
PTPRK-205ENST00000368213 TATP17735 454 aaPredicted RBP13.42□□□□□ -0.26
PTPRK-205ENST00000368213 PLCB2Q00722 1185 aa13.42□□□□□ -0.26
PTPRK-205ENST00000368213 TSPYL4Q9UJ04 414 aa13.42□□□□□ -0.26
PTPRK-205ENST00000368213 RAD21O60216 631 aa13.42□□□□□ -0.26
PTPRK-205ENST00000368213 RIPK4P57078 832 aa13.42□□□□□ -0.26
PTPRK-205ENST00000368213 CWC22Q9HCG8 908 aaKnown RBP13.42□□□□□ -0.26
PTPRK-205ENST00000368213 XPCQ01831 940 aaPredicted RBP13.41□□□□□ -0.26
PTPRK-205ENST00000368213 GRIN2AQ12879 1464 aa13.41□□□□□ -0.26
PTPRK-205ENST00000368213 PLEKHO1Q53GL0 409 aaPredicted RBP13.41□□□□□ -0.26
PTPRK-205ENST00000368213 DDX54Q8TDD1 881 aaKnown RBP13.41□□□□□ -0.26
PTPRK-205ENST00000368213 EHBP1L1Q8N3D4 1523 aa13.4□□□□□ -0.26
PTPRK-205ENST00000368213 CEBPAP49715 358 aaPredicted RBP13.4□□□□□ -0.26
PTPRK-205ENST00000368213 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
PTPRK-205ENST00000368213 IQGAP2Q13576 1575 aa13.4□□□□□ -0.27
PTPRK-205ENST00000368213 CDK19Q9BWU1 502 aa13.39□□□□□ -0.27
PTPRK-205ENST00000368213 GOLGA6L6A8MZA4 724 aa13.39□□□□□ -0.27
PTPRK-205ENST00000368213 AIMP1Q12904 312 aaKnown RBP13.39□□□□□ -0.27
PTPRK-205ENST00000368213 RIC3Q7Z5B4 369 aa13.39□□□□□ -0.27
PTPRK-205ENST00000368213 ADGRL1O94910 1474 aa13.38□□□□□ -0.27
PTPRK-205ENST00000368213 FAM177BA6PVY3 158 aa13.38□□□□□ -0.27
PTPRK-205ENST00000368213 MARCH6O60337 910 aa13.38□□□□□ -0.27
PTPRK-205ENST00000368213 FKBP5Q13451 457 aaPredicted RBP13.38□□□□□ -0.27
PTPRK-205ENST00000368213 AKNAQ7Z591 1439 aa13.38□□□□□ -0.27
PTPRK-205ENST00000368213 TRIM44Q96DX7 344 aaPredicted RBP13.37□□□□□ -0.27
PTPRK-205ENST00000368213 BCL2L13Q9BXK5 485 aa13.37□□□□□ -0.27
PTPRK-205ENST00000368213 PPP6R1Q9UPN7 881 aa13.37□□□□□ -0.27
PTPRK-205ENST00000368213 ZNF692Q9BU19 519 aaPredicted RBP13.37□□□□□ -0.27
PTPRK-205ENST00000368213 LRRFIP1Q32MZ4 808 aaKnown RBP13.37□□□□□ -0.27
PTPRK-205ENST00000368213 RTEL1-TNFRSF6BF6WH68 1400 aa13.36□□□□□ -0.27
PTPRK-205ENST00000368213 KIF6Q6ZMV9 814 aa13.36□□□□□ -0.27
PTPRK-205ENST00000368213 ADAMTS2O95450 1211 aa13.36□□□□□ -0.27
PTPRK-205ENST00000368213 RASSF8Q8NHQ8 419 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 RPGRIP1LQ68CZ1 1315 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 HFM1A2PYH4 1435 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 ERBINQ96RT1 1412 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 APAF1O14727 1248 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 E9PSI1 815 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 TCERG1O14776 1098 aaKnown RBP13.35□□□□□ -0.27
PTPRK-205ENST00000368213 ARHGEF11O15085 1522 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 CABP4P57796 275 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 GAS2L2Q8NHY3 880 aa13.35□□□□□ -0.27
PTPRK-205ENST00000368213 ZNF608Q9ULD9 1512 aaPredicted RBP13.34□□□□□ -0.27
PTPRK-205ENST00000368213 CABP1Q9NZU7 370 aa13.34□□□□□ -0.27
PTPRK-205ENST00000368213 SPG7Q9UQ90 795 aa13.34□□□□□ -0.27
PTPRK-205ENST00000368213 ARAP1Q96P48 1450 aa13.34□□□□□ -0.27
PTPRK-205ENST00000368213 EPRSP07814 1512 aaKnown RBP13.34□□□□□ -0.27
PTPRK-205ENST00000368213 DENND4BO75064 1496 aaPredicted RBP13.34□□□□□ -0.27
PTPRK-205ENST00000368213 NGLY1Q96IV0 654 aa13.34□□□□□ -0.27
PTPRK-205ENST00000368213 SPRYD3Q8NCJ5 442 aa13.33□□□□□ -0.27
PTPRK-205ENST00000368213 CDK13Q14004 1512 aaKnown RBP13.33□□□□□ -0.27
PTPRK-205ENST00000368213 GNAI1P63096 354 aa13.33□□□□□ -0.28
PTPRK-205ENST00000368213 ZC3H6P61129 1189 aaKnown RBP13.33□□□□□ -0.28
PTPRK-205ENST00000368213 ZKSCAN2Q63HK3 967 aa13.33□□□□□ -0.28
PTPRK-205ENST00000368213 URB2Q14146 1524 aaKnown RBP13.33□□□□□ -0.28
PTPRK-205ENST00000368213 PLB1Q6P1J6 1458 aa13.33□□□□□ -0.28
PTPRK-205ENST00000368213 NRDCO43847 1150 aa13.33□□□□□ -0.28
PTPRK-205ENST00000368213 G3BP1Q13283 466 aaKnown RBP eCLIP13.32□□□□□ -0.281e-7■■■■□ 21.6
PTPRK-205ENST00000368213 RUNDC1Q96C34 613 aa13.32□□□□□ -0.28
PTPRK-205ENST00000368213 HMGB2P26583 209 aaKnown RBP13.32□□□□□ -0.28
PTPRK-205ENST00000368213 AMER1Q5JTC6 1135 aaPredicted RBP13.32□□□□□ -0.28
PTPRK-205ENST00000368213 RILPL2Q969X0 211 aa13.32□□□□□ -0.28
PTPRK-205ENST00000368213 UBAP1LF5GYI3 381 aa13.31□□□□□ -0.28
PTPRK-205ENST00000368213 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
PTPRK-205ENST00000368213 TCEAL9Q9UHQ7 104 aa13.31□□□□□ -0.28
PTPRK-205ENST00000368213 APPP05067 770 aa13.31□□□□□ -0.28
PTPRK-205ENST00000368213 PRXQ9BXM0 1461 aa13.31□□□□□ -0.28
PTPRK-205ENST00000368213 IFIT2P09913 472 aaKnown RBP13.31□□□□□ -0.28
PTPRK-205ENST00000368213 API5Q9BZZ5 524 aaKnown RBP13.31□□□□□ -0.28
PTPRK-205ENST00000368213 AKAP17AQ02040 695 aaKnown RBP13.3□□□□□ -0.28
PTPRK-205ENST00000368213 SAMD1Q6SPF0 538 aaPredicted RBP13.3□□□□□ -0.28
PTPRK-205ENST00000368213 DHX16O60231 1041 aaKnown RBP13.29□□□□□ -0.28
PTPRK-205ENST00000368213 PLIN1O60240 522 aa13.29□□□□□ -0.28
PTPRK-205ENST00000368213 TOM1O60784 492 aa13.29□□□□□ -0.28
PTPRK-205ENST00000368213 CCDC34Q96HJ3 373 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms