RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 TNNT3P45378 269 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 INCENPQ9NQS7 918 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 FOXD1Q16676 465 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 PABPN1Q86U42 306 aaKnown RBP eCLIP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 SSR1P43307 286 aaKnown RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 DCTN1Q14203 1278 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 CENPQQ7L2Z9 268 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 MYO1BO43795 1136 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 PIP4K2AP48426 406 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-207ENST00000367255 POTEB2H3BUK9 544 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 GOLGA6L10A0A0M3HER8 536 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 REC8O95072 547 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 SKIDA1Q1XH10 827 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 ABCC8Q09428 1581 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 NUCB2P80303 420 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 CCDC38Q502W7 563 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 SPC24Q8NBT2 197 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 KDM4AO75164 1064 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 PDCP20941 246 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 APBB1O00213 710 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 HSCBQ8IWL3 235 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 PMFBP1Q8TBY8 1022 aa4.6□□□□□ -1.67
SYNE1-207ENST00000367255 AKAP17AQ02040 695 aaKnown RBP4.6□□□□□ -1.67
SYNE1-207ENST00000367255 NAT10Q9H0A0 1025 aaKnown RBP4.59□□□□□ -1.67
SYNE1-207ENST00000367255 NUDCQ9Y266 331 aa4.59□□□□□ -1.67
SYNE1-207ENST00000367255 HDGFP51858 240 aaKnown RBP4.59□□□□□ -1.67
SYNE1-207ENST00000367255 MRS2Q9HD23 443 aa4.59□□□□□ -1.67
SYNE1-207ENST00000367255 SRRTQ9BXP5 876 aaKnown RBP4.59□□□□□ -1.67
SYNE1-207ENST00000367255 RRP7BPQ9NSQ0 103 aa4.59□□□□□ -1.67
SYNE1-207ENST00000367255 SARNPP82979 210 aaKnown RBP4.59□□□□□ -1.67
SYNE1-207ENST00000367255 RASSF4Q9H2L5 321 aa4.59□□□□□ -1.67
SYNE1-207ENST00000367255 JAKMIP3Q5VZ66 844 aa4.59□□□□□ -1.67
SYNE1-207ENST00000367255 PRIMPOLQ96LW4 560 aa4.59□□□□□ -1.68
SYNE1-207ENST00000367255 DEF6Q9H4E7 631 aa4.59□□□□□ -1.68
SYNE1-207ENST00000367255 ST18O60284 1047 aa4.59□□□□□ -1.68
SYNE1-207ENST00000367255 FMNL3Q8IVF7 1028 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 POLA1P09884 1462 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 NT5C2P49902 561 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 AK7Q96M32 723 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 ARID4AP29374 1257 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 RBM25P49756 843 aaKnown RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 CLGNO14967 610 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 DDX12PQ92771 950 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 LUZP1Q86V48 1076 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 HOMEZQ8IX15 550 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 PLCD4Q9BRC7 762 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 HOOK1Q9UJC3 728 aaKnown RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 GTF2E1P29083 439 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 RDXP35241 583 aaKnown RBP4.58□□□□□ -1.68
SYNE1-207ENST00000367255 SLMAPQ14BN4 828 aa4.58□□□□□ -1.68
SYNE1-207ENST00000367255 HSP90B1P14625 803 aaKnown RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 PDCL3Q9H2J4 239 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 FYB1O15117 783 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 DHX57Q6P158 1386 aaKnown RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 PDE4CQ08493 712 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 CCDC50Q8IVM0 306 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 CC2D1BQ5T0F9 858 aaKnown RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 ZRSR2Q15696 482 aaKnown RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 SLKQ9H2G2 1235 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 SUDS3Q9H7L9 328 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 DYNC1I1O14576 645 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 PPFIA3O75145 1194 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 TNNT1P13805 278 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 BRD4O60885 1362 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 ANKRD18BA2A2Z9 1011 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 GOLGA6L9A6NEM1 432 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 NF2P35240 595 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 HSP90B2PQ58FF3 399 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 GSE1Q14687 1217 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 GOLGA6L10A6NI86 522 aa4.57□□□□□ -1.68
SYNE1-207ENST00000367255 BCCIPQ9P287 314 aaKnown RBP eCLIP4.57□□□□□ -1.68
SYNE1-207ENST00000367255 RABEP1Q15276 862 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 VGLL3A8MV65 326 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 SOS1Q07889 1333 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 CCDC173Q0VFZ6 552 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 TRERF1Q96PN7 1200 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 GPATCH3Q96I76 525 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 SEC63Q9UGP8 760 aaKnown RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 FBLN2P98095 1184 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 BMS1Q14692 1282 aaKnown RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 NAA25Q14CX7 972 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 RBM26Q5T8P6 1007 aaKnown RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 APLFQ8IW19 511 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 CALCOCO1Q9P1Z2 691 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 IQCDQ96DY2 449 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 GBP3Q9H0R5 595 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 KIF3BO15066 747 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 SPATS2Q86XZ4 545 aaKnown RBP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 CCDC39Q9UFE4 941 aa4.56□□□□□ -1.68
SYNE1-207ENST00000367255 WDR43Q15061 677 aaKnown RBP eCLIP4.56□□□□□ -1.68
SYNE1-207ENST00000367255 HFM1A2PYH4 1435 aa4.55□□□□□ -1.68
SYNE1-207ENST00000367255 YEATS2Q9ULM3 1422 aa4.55□□□□□ -1.68
SYNE1-207ENST00000367255 FRAT1Q92837 279 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-207ENST00000367255 PYM1Q9BRP8 204 aaKnown RBP4.55□□□□□ -1.68
SYNE1-207ENST00000367255 KIF15Q9NS87 1388 aa4.55□□□□□ -1.68
SYNE1-207ENST00000367255 CLSTN1O94985 981 aa4.55□□□□□ -1.68
SYNE1-207ENST00000367255 PRPF38AQ8NAV1 312 aaKnown RBP4.55□□□□□ -1.68
SYNE1-207ENST00000367255 NPHP1O15259 732 aa4.55□□□□□ -1.68
SYNE1-207ENST00000367255 ZNHIT6Q9NWK9 470 aaKnown RBP4.55□□□□□ -1.68
SYNE1-207ENST00000367255 IPO7O95373 1038 aaKnown RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms